LOCUS       NZ_CP147164             4411 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain SC42 plasmid p5, complete sequence.
ACCESSION   NZ_CP147164
VERSION     NZ_CP147164.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40144599
            Assembly: GCF_037157715.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4411)
  AUTHORS   Wang,D.
  TITLE     Klebsiella pneumoniae strains whole genome sequences
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4411)
  AUTHORS   Wang,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2024) School of Life Sciences, Taizhou University,
            1139 Shifudadao Avenue, Taizhou, Zhejiang 318000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.15.3; Canu v. 2.2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Illumina NovaSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037157715.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 18:41:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,636
            CDSs (total)                      :: 5,513
            Genes (coding)                    :: 5,373
            CDSs (with protein)               :: 5,373
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 50 of 140
            Pseudo Genes (incomplete)         :: 93 of 140
            Pseudo Genes (internal stop)      :: 17 of 140
            Pseudo Genes (multiple problems)  :: 19 of 140
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP147164.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4411
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="SC42"
                     /isolation_source="Wound discharge"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p5"
                     /geo_loc_name="China: Taizhou"
                     /lat_lon="28.40 N 121.26 E"
                     /collection_date="2021-07-16"
                     /collected_by="Dongguo Wang"
     gene            complement(join(4285..4411,1..1370))
                     /locus_tag="WBS28_RS28155"
     CDS             complement(join(4285..4411,1..1370))
                     /locus_tag="WBS28_RS28155"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_338790611.1"
                     /translation="MKGSVAKTGKSFKNRVDYILKDDHDFICSNMASDYNNVSDLTDEF
                     KAVSSFRQDIKKPVFHAFLSLPKNEHLTDEQWQEIAKDYLKEMNINIEKHQYICVRHND
                     TDQDHIHIVANRVGLDGSVWLGQHSAFNTIAACERLEIKHNLTITQGLKGQKSDVSAPT
                     KNEIEQALRTGEKPARIVLQNALQAAMVGKPDLETFIDRLQAVGIDPAFNVASTGNVAG
                     VSFGIKNNEKNIYFKGSQLGKKYSWNTIKGKVKYDKNRDDELIRRFAARKTDDENSIGR
                     SPIEPNINDDRTIIRNDDDTIGIGQYSIKPDTTDTYESKQLVRSNNHSFKLSEKYNRPT
                     DPKVRRTTQKAAQILNRVKKQYNKKSIKPYNQGGINSWRDKSDSGSISRILDHAETANA
                     ATNNFRLKGRGNINSRATKIEEIRSRLGIEKPVIQPKNKEKIVKEEIKKKPLGLSMNEN
                     RFKSKLKETLKKEKPRNETTPTQLQQEDDQHLKPRGFKPR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1367..1738)
                     /gene="mobC"
                     /locus_tag="WBS28_RS28160"
     CDS             complement(1367..1738)
                     /gene="mobC"
                     /locus_tag="WBS28_RS28160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_338790613.1"
                     /translation="MDTDRKRGRIGLNHEVRRDISIQFRVNKAEFDYLKELVEASGLER
                     GHYIRKEILNSEPVIKRKMPEFEQSLYREIQQQGNNINQIAKKLNTNEDFKQSLAAEAN
                     FAIKQLMKRILKACEVYTV"
                     /name="mobC"
     gene            complement(1725..1985)
                     /locus_tag="WBS28_RS28165"
     CDS             complement(1725..1985)
                     /locus_tag="WBS28_RS28165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_139455497.1"
                     /translation="MNENDIDQSLLELLARYFYYIDPNEENTAFLEANKDEQDLCYFVA
                     YRYIKENKTQDLIGALKDQKDEDYIKAMKDYVYGGGKYGYR"
                     /name="hypothetical protein"
     gene            complement(2613..2837)
                     /locus_tag="WBS28_RS28170"
     CDS             complement(2613..2837)
                     /locus_tag="WBS28_RS28170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016241877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_271358967.1"
                     /translation="MHEQKDNKRRLGFMIGKSNATLPADEQTEAELDQEVLKLFYPNQC
                     TKDTIERSEAGTDVFTASGSDDLFKKLKL"
                     /name="hypothetical protein"
     gene            3131..3997
                     /locus_tag="WBS28_RS28175"
     CDS             3131..3997
                     /locus_tag="WBS28_RS28175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000481810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_097346505.1"
                     /translation="MFNIENNREILKSQIPLKPYATNDLDFGLTIQNKNKALDMLYLQV
                     NHPLYLHTMVFDLDKENCFYEFENAHLPIPSFITKSPDSGRCHYGYMLNAPISSTEKSR
                     QKPVKFARALYYNMATRLGADLGYAGLITKNPLHSHWSPFWSGADLYELNDLADCFDDL
                     EDPKKRENTELAFGRNVEMFDTQRQWAYKNVLKYKNESSFDAFYKELLLKCETFNSFAN
                     YNNLLPYKELVSTAKSIAKFCWKEFSNEKLHDIQSKKQKARRSKRTEKQKLHTKTLLEK
                     AIMINEE"
                     /name="replication initiation protein"
     gene            4001..4276
                     /locus_tag="WBS28_RS28180"
     CDS             4001..4276
                     /locus_tag="WBS28_RS28180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="WP_277117130.1"
                     /translation="MTALHTVKRNKTAKEMAQRLNISDRTVRKLIALPREDYEKEAKQR
                     RLKAFVLREAGFKWSEVGEKLGTTKHGAIALYKRYQQIDAPTTKEA"
                     /name="HTH domain-containing protein"
ORIGIN
        1 tcattcatac tcaaacctaa aggttttttc tttatttctt ctttaactat tttttcttta
       61 ttctttggct gaataactgg tttttctata ccaagtctac ttcttatttc ttcgatctta
      121 gttgctctac tattgatgtt gccacggcct ttgagtctaa agttattcgt ggctgcgttg
      181 gctgtttctg catgatcaag tatcctactg atagaaccgc tatcagattt atcacgccaa
      241 ctattgatgc caccttgatt ataaggcttg attgattttt tattgtattg ttttttaact
      301 ctgttgagta tttgtgcagc tttttgtgtt gttcttctaa cttttgggtc tgttggtcta
      361 ttatattttt cgctgagttt aaagctgtgg ttgttgcttc taacgagttg tttactctcg
      421 taagtgtctg ttgtgtctgg tttaatgctg tactgaccga ttccgatagt atcatcatcg
      481 tttctgataa tggttctatc gtcattgata tttggttcaa taggtgatcg tccaatacta
      541 ttttcgtcat ctgtttttct tgctgcgaat cttctaatga gttcatcatc tctatttttg
      601 tcatatttca ccttaccttt aatagtgttc caactgtatt ttttacctaa ctgtgagcct
      661 ttaaaataaa tatttttttc attatttttg ataccaaacg acactccggc gacgttgcca
      721 gtgcttgcaa cgttgaaggc cggatcgatg cctacagcct gcagtctgtc tatgaatgtc
      781 tcaaggtctg gttttcctac catagccgcc tgtaatgcgt tctgtagcac gatacgagct
      841 ggtttttcac cagtgcggag ggcttgctcg atctcgttct tggttggtgc tgatacgtct
      901 gatttttgac ctttaagccc ctgtgtaatg gttaagttgt gctttatctc aagacgttca
      961 caagctgcta ttgtgttaaa tgctgagtgc tgcccaagcc atactgaacc gtctaaaccg
     1021 actctatttg ctactatatg gatatggtct tgatctgtat cgttatgacg cacacaaata
     1081 tattgatgtt tttctatatt aatattcatt tctttcaaat agtcttttgc tatctcttgc
     1141 cattgttcat ctgttaaatg ttcattcttg ggaagagata aaaaagcgtg aaaaactggt
     1201 ttttttatat cttgcctaaa actgcttaca gctttaaact catcagttaa atcactaaca
     1261 ttattataat cacttgccat attgctacat ataaaatcgt ggtcatcttt aagaatgtaa
     1321 tcaactctat ttttaaaaga cttacccgtc ttagctacgc ttcctttcat actgtataaa
     1381 cctcgcaagc ttttaatatt cttttcataa gttgctttat ggcaaagtta gcttctgcgg
     1441 ctaaagattg tttaaagtct tcattcgtat ttagcttttt agcaatctga tttatattat
     1501 taccttgctg ttgtatttct ctgtataatg attgctcaaa ctcaggcatt ttccttttta
     1561 taacgggttc agagtttaaa atctcttttc ggatgtaatg acctctttca agccctgatg
     1621 cttccacaag ctcttttaaa taatcaaact ctgctttgtt tactctaaac tgtatagata
     1681 tatctctacg tacttcgtga tttaatccta tacgccctct ttttctatct gtatccatat
     1741 ttaccacctc cataaacata atctttcatt gctttgatat aatcttcatc tttttgatct
     1801 ttcaaagcac caataagatc ttgagtttta ttttctttaa tatagcgata agctacaaaa
     1861 taacataaat cttgttcatc tttatttgct tcaagaaatg ctgtattttc ttcatttggg
     1921 tctatataat aaaaatatct tgctaatagt tctagcaagg actgatctat atcattctca
     1981 ttcattttaa acactcctat atatatttat aacattcaat gtaaaactac cggattttac
     2041 cgcttcccct tgatagggga ataagcggaa gggtagatct tttaacaacc ctccgaacga
     2101 agtgagaggg ggcaacctga aaggttgggt ataataccgg ctacgggatt acaccttgcc
     2161 tcagtttccg aaaaacaaaa ataaagctga actcaatcta tatttaaata aataactgat
     2221 ctaaaaagtt tgtcaatata gcggctacat aaataaatac cctgcacaac aaataaaatg
     2281 caaataaaaa atagtgtaaa taatatattg tcttgatggg tagctgtgcg taataggtag
     2341 ctttgcgtaa aaaatgctgc tgctacgtga aatctgacaa agttcgtgac ctcttggtag
     2401 tcagatttta aggaatgggg ggtttgatcg gcggcgacag aacagtagaa aacttgcttt
     2461 tctgctgttg ctggcgtcta tgggtttaaa atgctcataa aatcaacaga ctatagtata
     2521 tattagtata tactgcatcg agggttggcc ttttcatcgt gtccggggtt tggtttgttc
     2581 caactggtga agatggccag ctctccccta ccctacagct tcagtttttt gaacaggtca
     2641 tcagaaccgg aggccgtgaa aacgtctgta ccggcttctg agcgttctat ggtgtcttta
     2701 gtgcattgat taggataaaa cagcttcagg acttcctgat caagctctgc ttctgtttgt
     2761 tcgtctgctg gcaatgttgc attgctctta ccaatcataa aacctaaccg ccgtttgttg
     2821 tccttctgtt catgcatgac ttacctcccc agcacagcca gatcctgcat agagtttagt
     2881 atacgttaca gtgtgactta ctctgccata gccttcggcc tgtgcttcgc tgtggtgtag
     2941 tgtccccaaa actccgtcta atacctgata ttggtagact tcctacttaa caactttttt
     3001 tgacggatct attgacaact ttttttgata tagtaaaact gtaagagatt ataaataaaa
     3061 gaaaagcccg cgttctcgat tagtttggcg acagtgagag aacggggcat tacagaaagg
     3121 atactgctaa atgttcaata tagaaaataa cagagagata ttaaaaagtc aaataccttt
     3181 aaagccatat gctactaatg atcttgattt tggattgact attcaaaata agaataaagc
     3241 tttagatatg ctttatttac aagtaaatca tcccttatac cttcatacaa tggtatttga
     3301 tttagacaaa gaaaactgct tttacgagtt tgaaaatgct catttgccca tcccgtcttt
     3361 tataacaaaa tcaccagact ctggtagatg tcattacggt tatatgctta atgctccgat
     3421 ctcatcaaca gagaaaagca gacagaagcc tgtcaagttt gccagagcat tatattacaa
     3481 tatggctact cgtcttggtg ctgatcttgg ctatgcggga ctgattacta aaaacccact
     3541 gcatagccat tggtcgccgt tctggtctgg tgctgattta tacgaactta atgatttagc
     3601 tgattgtttt gatgatttag aagaccctaa aaagcgagaa aatacagaac ttgcttttgg
     3661 tcgtaatgtt gagatgttcg atactcaaag gcaatgggct tataaaaatg tgctaaaata
     3721 taagaatgaa agctcattcg atgcttttta taaagagtta ttattgaaat gcgaaacatt
     3781 caatagcttt gctaactata ataatctatt accttacaaa gaacttgtat caacggcaaa
     3841 aagtatagct aagttttgtt ggaaagagtt tagcaacgaa aaacttcatg atattcagag
     3901 taaaaaacag aaagcaagaa gatctaaaag aacagaaaaa caaaagctac atacaaaaac
     3961 acttttagaa aaagcaataa tgattaacga ggagtaaaat atgacggcat tacatacagt
     4021 aaaaaggaat aaaacagcaa aagaaatggc tcaaagatta aatatcagtg atagaaccgt
     4081 cagaaagttg attgctttac ctcgtgaaga ctatgagaaa gaagcaaaac aaagacgatt
     4141 aaaagccttt gtattacgtg aagcgggctt taaatggtca gaggttgggg aaaagctggg
     4201 aactacaaaa cacggggcta tagctcttta taaacgttat caacaaatag acgcaccaac
     4261 aacaaaagag gcttaaagcc tcttttatcg cggtttaaaa cctcttggtt ttaaatgctg
     4321 atcgtcttcc tgctgtagtt gtgttggtgt tgtttcattt cttggttttt cttttttaag
     4381 ggtttctttt aacttcgatt taaatctatt t
//
