LOCUS       NZ_CP145808             4936 bp    DNA     circular CON 18-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Indiana strain
            SJTUF14173V2 plasmid p14173B, complete sequence.
ACCESSION   NZ_CP145808
VERSION     NZ_CP145808.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37527243
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Indiana
  ORGANISM  Salmonella enterica subsp. enterica serovar Indiana
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4936)
  AUTHORS   Zhang,Z. and Shi,C.
  TITLE     Evolutionary mutations mediating ciprofloxacin resistance in
            Salmonella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4936)
  AUTHORS   Zhang,Z. and Shi,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2023) MOST-USDA Joint Research Center for Food
            Safety, Shanghai Jiao Tong University, Dongchuan RD800, Shanghai
            200240, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 1.2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 451x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037206405.1-RS_2024_03_18
            Annotation Date                   :: 03/18/2024 10:24:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 9
            CDSs (total)                      :: 9
            Genes (coding)                    :: 8
            CDSs (with protein)               :: 8
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP145808.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4936
                     /organism="Salmonella enterica subsp. enterica serovar
                     Indiana"
                     /mol_type="genomic DNA"
                     /strain="SJTUF14173V2"
                     /serovar="Indiana"
                     /host="chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:286783"
                     /plasmid="p14173B"
                     /geo_loc_name="China: Guangdong"
                     /lat_lon="36.34 N 118.15 E"
                     /collection_date="2018"
                     /collected_by="SJTUF"
     gene            1..156
                     /locus_tag="V6Z57_RS00005"
                     /old_locus_tag="V6Z57_23630"
     CDS             1..156
                     /locus_tag="V6Z57_RS00005"
                     /old_locus_tag="V6Z57_23630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010940654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="WP_072210546.1"
                     /translation="MNDKWEFYLDNSKEWRWRRTASNGRIVGASSQGYVNKSDCIDNAR
                     RHGYNG"
                     /name="DUF1508 domain-containing protein"
     gene            231..527
                     /locus_tag="V6Z57_RS00010"
                     /old_locus_tag="V6Z57_23635"
     CDS             231..527
                     /locus_tag="V6Z57_RS00010"
                     /old_locus_tag="V6Z57_23635"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_138650211.1"
                     /translation="MERKHKGKCPFCNSEMAPEVIEKNTIRRDKCKCTTCGEIIYKCRN
                     IFCNDYAKGGLLYDDELCPPCGEGLLKAVKEFPDKYRAAIQKVVEEKNREKNN"
                     /name="hypothetical protein"
     gene            complement(1138..1371)
                     /locus_tag="V6Z57_RS00015"
                     /old_locus_tag="V6Z57_23640"
     CDS             complement(1138..1371)
                     /locus_tag="V6Z57_RS00015"
                     /old_locus_tag="V6Z57_23640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_096987281.1"
                     /translation="MTELETHLLNALKQLQQDYMQRLNEWESAFVELQKMFSLTQRDNA
                     MLNERVMQLSQQVQHLSGQTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1378..1896)
                     /locus_tag="V6Z57_RS00020"
                     /old_locus_tag="V6Z57_23645"
     CDS             complement(1378..1896)
                     /locus_tag="V6Z57_RS00020"
                     /old_locus_tag="V6Z57_23645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001447511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_112016408.1"
                     /translation="MSNLLRTGAEFEKKLKERAESTEKMLNDEFSRLGESVSEAVTSNE
                     TKIKDAIALFTTSTEESLKKHREGVKEAMMQHRKDMLKLAGSSGMRLLGIVFLLFTASG
                     GTLWYLGGRIQTNLEEIRVQEETLRKLNAKTWGVEFVQDGRRKFLVLPYGKSAEVTHYQ
                     GKDWIQLTE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1934..2584)
                     /locus_tag="V6Z57_RS00025"
                     /old_locus_tag="V6Z57_23650"
                     /pseudo=""
     CDS             complement(<1934..2584)
                     /locus_tag="V6Z57_RS00025"
                     /old_locus_tag="V6Z57_23650"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2574..2897)
                     /locus_tag="V6Z57_RS00030"
                     /old_locus_tag="V6Z57_23655"
     CDS             complement(2574..2897)
                     /locus_tag="V6Z57_RS00030"
                     /old_locus_tag="V6Z57_23655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000955996.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIERELRSLRQVVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2962..3153
                     /locus_tag="V6Z57_RS00035"
                     /old_locus_tag="V6Z57_23660"
     CDS             2962..3153
                     /locus_tag="V6Z57_RS00035"
                     /old_locus_tag="V6Z57_23660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165985.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3812..3970
                     /locus_tag="V6Z57_RS00040"
                     /old_locus_tag="V6Z57_23665"
     CDS             3812..3970
                     /locus_tag="V6Z57_RS00040"
                     /old_locus_tag="V6Z57_23665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071777339.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHALTPLAAATGNWTRWIEIL
                     RVLEVVA"
                     /name="replication initiation protein"
     gene            4580..4879
                     /locus_tag="V6Z57_RS00045"
     CDS             4580..4879
                     /locus_tag="V6Z57_RS00045"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_337265607.1"
                     /translation="MDLKPKGVCPFCKKEINARVIQENKIRRDKCECSDCKSIIYVCRT
                     PGCENYAKGGHLYDDELCPSCMSNIGRSIGALGTTALSIVVSTVVTRLLEKKMK"
                     /name="hypothetical protein"
     Typing          complement(3232..3316)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.674"
                     /coverage="100.0"
                     /evalue="6.569999999999999e-34"
     Typing          3327..3884
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.821"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(1041..2584)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.534"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 atgaacgata agtgggagtt ttatctcgat aattcaaaag agtggcgctg gcgcagaact
       61 gcaagcaacg ggcgaattgt tggagcatca tctcaaggat atgtcaataa atctgattgt
      121 attgataacg cacgtcgtca tggctacaac ggctaatata aattgattct catgttggga
      181 ttccaagcag gaatcccaat tgcaaagaga taaacaaata gaaaaatacc atggaaagaa
      241 aacacaaagg taagtgccct ttttgcaata gcgaaatggc tccagaagtt atagaaaaaa
      301 acactatccg cagagataaa tgtaaatgta caacttgtgg agagattatt tataaatgcc
      361 gaaatatatt ctgtaatgac tacgcaaaag gcggattact ttacgatgac gaactgtgcc
      421 ctccatgtgg tgaaggtctt ttaaaggcgg taaaagagtt ccctgataag tatcgagcag
      481 caattcaaaa agttgtagaa gagaagaata gagaaaagaa taattaatgg tagcgcacaa
      541 aaccatataa ctatattagt taattatcat gaaaaccaat cgatttcgta agcaatacca
      601 aatatttcta tatccccaac acacgcccta acagagagtt atctctctca ttatttttaa
      661 caggtatttt agtacctgtt ttagttaatc catttcctaa aaggaatatt ttgaaaccaa
      721 atatccctat agctcttcta ccatatgaac aatatttttt tcatatcttg tatatttatg
      781 agtggaatta attatttcca acacttatca aaccatcaat ttaacataac cctgtaattg
      841 tacgcaccgc taaaacgcgt tcatcgcgat cacggcagca gacaggtaaa aatggcaaca
      901 aaccacccga aaaactgccg cgatcgcgcc tgataaattt taaccgtatg aatacctatg
      961 caaccagatg gtgcagacca cattagcccg tcaaaatcca ccgaacctgc catttttcat
     1021 agtttcgcca tcacagcgac aacgaaggac catccagtgt gcgttcctgt atttccagct
     1081 ggcgttcccg ctccagggat aatgcatgtt cgcgctcctg catcagccgt tcatccctta
     1141 tctcctgttc tcgctgtata actggctcaa gcgttctgtc tgcccgctca agtgttgcac
     1201 ctgctgactc aactgcatga cccgctcgtt cagcatcgcg ttgtcccgtt gcgtaagcga
     1261 aaacatcttc tgcaattcca cgaaggcgct ctcccattcg ttcagccgct gcatatagtc
     1321 ctgttgcagc tgctttaagg cgttcagcaa atgtgtttcc agctctgtca ttccgtatca
     1381 ctccgtcagt tgtatccagt ccttcccctg atagtgagtc acctctgctg atttcccgta
     1441 cggaaggacc agaaatttcc ttctcccgtc ctgaacaaac tccacacccc atgtcttcgc
     1501 gttcagtttc cgcaatgtct cttcctgtac cctgatttct tccaggttcg tctgtatcct
     1561 cccgccgaga taccagagcg tcccgccact cgcggtaaac aggagaaaga ctatccccag
     1621 caacctcatg cccgaactcc ctgccagctt taacatgtcc ttccggtgct gcatcatcgc
     1681 ctctttcacc ccttcccggt gttttttcag cgattcctct gtcgacgttg tgaacagggc
     1741 tatagcgtct ttgattttcg tctcgtttga ggtcacagcc tcgcttacag attcgccgag
     1801 cctgctgaat tcgtcgttca gcattttctc tgtagattcg gctctctctt tcagcttttt
     1861 ctcgaactcc gcgcccgtcc gtaaaagatt gctcataaaa cgctcctttc agtctgatat
     1921 tcctcccgcc gttcgggtct gcaatgctga tactgcttcg cgtcaccctg accacttcaa
     1981 gccccacctc tgtgagcgcc tgaatcacat cctgacggcc ttttatctct ccggaatggt
     2041 aaagcacctc caggcctcgt gtaacgctct cagcaagcgc ctgtttcgtt tccggcaggt
     2101 tatcagggag tgtcagcgtc cggcgattct ccggggcgtt ggggtcatgc agcccgtaat
     2161 ggtgattaac cagcgtctgc caggcatcaa ttctcggcct gtctgcccgg tcgtagtacg
     2221 gctggaggcg ttttccggtc tgtagctcca tgttcggaat gacaaaattc agctcaagcc
     2281 gtcccttgtc ctggtgctcc acccacagga tgctgtactg atttttttcg agaccgggca
     2341 tcagtacacg ctcaaaactc gccatcactt tttcacgtcc tcccggtggc agttctttct
     2401 ccgcaaacga cagaacaccg gacgtgtatt tcttcgcaaa tggcgtggca tcgatgagtt
     2461 cccggacttc ttccggatta ccctgaagca ccgttgcgcc ttcgcgatta cgctccctcc
     2521 ccagcaggta atcaaccgga ccactgccac caccttttcc cctggcatga aacttaacta
     2581 tcatcccgcg ctccctgttc cctgacgacc tgccgtaagc tgcgcaactc tctctcgatg
     2641 gccatcagtg cggccaccac ctgaacccgg tcgccggaag accactgccc gctgttcacc
     2701 ttcctcgctg tctgattcag gttattcccg atggcggcca gctgacgcag taacggcgga
     2761 gccaaagttg gcagcttccc ggaacgggca accggctcac ccaggcagac ccgccgcatc
     2821 cataccgcca gttgtttacc ctcacaacgt tccagtaacc gggcatgttc atcatcagta
     2881 acccgtatcg tgagcatcct ctctcgtttc atcggtatca ttacccccat gaacagaaat
     2941 cccccttaca cggaggcatc agtgactaaa caggaaaaaa ccgcccttaa catggcccgc
     3001 tttatcagaa gccagacatt aacgctgctg gagaaactca acgaactgga cgcagatgaa
     3061 caggccgata tttgtgaatc acttcacgac cacgccgacg agctttaccg cagctgcctc
     3121 gcacgcttcg gggatgacgg tgaaaacctc tgacacatac agctcccgga gacggtcaca
     3181 gcttgtctgt gagcggatgc cgggagcaga caagcccgtc agggcgcgtc agggggtttc
     3241 ggggcgaagc cctgaaccag tcacgtagcg ctagcggagt gtatactggc ttaactatgt
     3301 ggcatcagtg cagattgtat gaaaagtgcc ccatgccggg tgtgaaatgc cgcacagatg
     3361 cgtaaggaga aaatgcgcgt ccaggcgctt ttccgcttcc tcgctcactg actcgctacg
     3421 ctcggtcgtt cggctgcggc gagcggtatc agctcactca aagacggtaa tgcggttatc
     3481 cacagaatca ggggataacg ccaaaggaaa catgtgagca aaaaacaaga acccggaaaa
     3541 ggccacgccg ctggcgtttt tccataggct ccgcccccct gacgagcatc acagaaatcg
     3601 acgctcaagt cagaggtggc gaaacctgac aggactataa agataccagg cgtttccccc
     3661 tggaagctcc ctcgtgcgct ctcctgttcc gaccctgccg cttaccggat acctgtccgc
     3721 ctttctccct tcgggaagcg tggcgctttc tcatagctca cgctgttggt atctcagttc
     3781 ggtgtaggtc gttcgctcca agctgggctg tgtgcacgaa ccccccgttc agcccgaccg
     3841 ctgcgcctta tccggtaact atcgtcttga gtccaacccg gtaagacacg ccttaacgcc
     3901 actggcagca gccactggta actggacaag gtggattgag atattaagag ttcttgaagt
     3961 ggtggcctaa ctgcggctac actagaagga cagtatttgg tatctgtgct ccaccaagcc
     4021 agttacccgg ttaagcagtc cccaactgac ttaaccttcg actaaaccgc ctccccaggc
     4081 ggttttttcg tttacaggca gcagattacg cgcagaaaaa aaggatctca agaggatcct
     4141 ttgatctttt tactgaagga gggcaaatct cctaaaactc ccagccacct tctaacttca
     4201 tttttgtata tctaatattg atacacgcat ttattgaacg taatcaaacg acaccaacac
     4261 atatacaaca tattgttttt aataaaaaaa tcaaaaaaaa taccattatt agcactctaa
     4321 taaatatttt taatatcaat aaaatcaatg cattacgttt atcacatagt atactttaca
     4381 tttattatgt tcagaatata ataaatcaac attagtgtat gataaaaagg ggatttttat
     4441 ggcaggtatc gtcatctatc gggctaaatg cttaaactgc cgccacgaat ggaccagtag
     4501 agctggattt gggacacctg attattgccc taaatgtcgt tcaaaattaa taagttgtag
     4561 tgctattagg taaaccctaa tggacttaaa acctaaagga gtgtgtcctt tttgtaaaaa
     4621 ggaaatcaat gcccgtgtaa ttcaagaaaa caagatacgg cgagataagt gtgagtgttc
     4681 tgattgtaaa tcaataattt acgtatgtcg tactccagga tgtgagaatt acgctaaggg
     4741 cggtcattta tatgatgatg aattatgccc gtcatgcatg tcgaacatag gtagaagtat
     4801 cggcgcatta gggacaacag ccttaagtat cgtcgtcagt acagttgtaa cacgcttatt
     4861 agaaaaaaaa atgaaatgat acctacctgc tggtacaaat catcactaaa tatctaactg
     4921 gaagaaggaa acctaa
//
