LOCUS       NZ_CP145436             2023 bp    DNA     circular CON 05-APR-2024
DEFINITION  Acinetobacter baumannii strain A20AB02 plasmid pA20AB02f, complete
            sequence.
ACCESSION   NZ_CP145436
VERSION     NZ_CP145436.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39325909
            Assembly: GCF_036870965.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Moon,D.
  TITLE     Genome sequence of Acinetobacter baumannii in Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Moon,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2024) Division of Antimicrobial Resistance
            Research, National Institute of Health, 187 Osongsaengmyeong2-ro,
            Cheongju-si, 28159, Korea, Cheongju-si, Chungcheongbuk-do 28159,
            South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: flye v. v2.9.3; pilon v. v1.24
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 601.092x
            Sequencing Technology             :: Illumina MiSeq; Minion
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036870965.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 16:42:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,827
            CDSs (total)                      :: 3,732
            Genes (coding)                    :: 3,634
            CDSs (with protein)               :: 3,634
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 23 of 98
            Pseudo Genes (incomplete)         :: 66 of 98
            Pseudo Genes (internal stop)      :: 15 of 98
            Pseudo Genes (multiple problems)  :: 6 of 98
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP145436.1.
            Bacteria and source DNA available from National Institute of
            Health.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="A20AB02"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pA20AB02f"
                     /geo_loc_name="South Korea"
                     /collection_date="2020-01-23"
     gene            <1..585
                     /gene="blaOXA"
                     /locus_tag="VP418_RS19120"
                     /old_locus_tag="VP418_19120"
                     /pseudo=""
     CDS             <1..585
                     /gene="blaOXA"
                     /locus_tag="VP418_RS19120"
                     /old_locus_tag="VP418_19120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046004.1"
                     /GO_function="GO:0008800 - beta-lactamase activity
                     [Evidence IEA]"
                     /GO_process="GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /name="blaOXA"
     gene            complement(690..>1349)
                     /locus_tag="VP418_RS19125"
                     /old_locus_tag="VP418_19125"
                     /pseudo=""
     CDS             complement(690..>1349)
                     /locus_tag="VP418_RS19125"
                     /old_locus_tag="VP418_19125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005025424.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /name="ATP-binding protein"
     gene            complement(<1349..1804)
                     /locus_tag="VP418_RS19130"
                     /old_locus_tag="VP418_19130"
                     /pseudo=""
     CDS             complement(<1349..1804)
                     /locus_tag="VP418_RS19130"
                     /old_locus_tag="VP418_19130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004890075.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /name="DEAD/DEAH box helicase family protein"
     gene            complement(1812..2009)
                     /locus_tag="VP418_RS19135"
                     /old_locus_tag="VP418_19135"
     CDS             complement(1812..2009)
                     /locus_tag="VP418_RS19135"
                     /old_locus_tag="VP418_19135"
                     /inference="COORDINATES: protein motif:HMM:NF042813.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IIL restriction-modification enzyme MmeI"
                     /protein_id="WP_338526122.1"
                     /translation="MLAVRESYSHLSLAQLYDPEKMPFDLKQAHKENDSLVEKLYKSSD
                     FKTDEERLERLFHYYETMLN"
                     /name="type IIL restriction-modification enzyme MmeI"
     ARG             2..585
                     /name="OXA-23"
                     /gene="OXA-23"
                     /gene_name="OXA beta-lactamase; OXA-23-like beta-lactamase"
                     /tool="rgi"
                     /drug_class="carbapenem; penam"
                     /identity="100.0"
                     /coverage="71.06"
ORIGIN
        1 acatttaaaa tgttgaatgc cctgatcgga ttggagaacc agaaaacgga tattaatgaa
       61 atatttaaat ggaagggcga gaaaaggtca tttaccgctt gggaaaaaga catgacacta
      121 ggagaagcca tgaagctttc tgcagtccca gtctatcagg aacttgcgcg acgtatcggt
      181 cttgatctca tgcaaaaaga agtaaaacgt attggtttcg gtaatgctga aattggacag
      241 caggttgata atttctggtt ggtaggacca ttaaaggtta cgcctattca agaggtagag
      301 tttgtttccc aattagcaca tacacagctt ccatttagtg aaaaagtgca ggctaatgta
      361 aaaaatatgc ttcttttaga agagagtaat ggctacaaaa tttttggaaa gactggttgg
      421 gcaatggata taaaaccaca agtgggctgg ttgaccggct gggttgagca gccagatgga
      481 aaaattgtcg cttttgcatt aaatatggaa atgcggtcag aaatgccggc atctatacgt
      541 aatgaattat tgatgaaatc attaaaacag ctgaatatta tttaagagct tgacagaaac
      601 tctaatttta taaaaagccc atttgagata aatgggcctt ttataatctg actaataatg
      661 aaacctgtta atttttctag tttaaaattt tacagtgctt ttagttgttg tgatccaatc
      721 cagtgtttag agaactgata ggcggcacgt cctgaccgtt gaccacgtgc ctgacaccag
      781 cgtagggctt cagcatgggc ttcgtcattc attggcatat ctgttttagc aagatagtgt
      841 tctacaatgg ttaaatacag gttttgatcc attggataga atgaaagcca cattccaaaa
      901 cgatccgaga gtgaaatttt ttcctcaatg gcttcttgtg gatgcaactc ggtatattgc
      961 ggtacatcta cacgagtcac tggcgtgttc tcatgcataa attctggtaa cagatgtcga
     1021 cggttgctgg ttgcataaat aataaaatta cttgtacctg actgtaatga gccatcaagt
     1081 acacttttta agctgcgata gttttcatct tcagcattaa aggccagatc atcgcagtag
     1141 acaatgaact tttccggacg cttctggatg agcttctgga tttcaggaag atcggacaga
     1201 tcatcacgtt caatttcaat taaacgtaat ccttgatctt tatactcggt taaaagggca
     1261 cggacaattg aagattttcc tgtgccgcgt gaaccagtaa ggagaacatc attggctggc
     1321 agattctgca aaaattgtcg tgtattttga ctaatgtatt attaaataca tgatcttcaa
     1381 gctcttcaaa agcaaatctt agtgtggcat gtgtacatac taaaatttga tctgtacctt
     1441 ccataaagtg tttaaaggct tttactttgc ttttatcgcc accagcagta cataagttgt
     1501 tttcaggttt gatatcccaa tctgcaaaaa agccactttc gcttagtttt gtgctagcaa
     1561 atgaaccgcc aattgagcgt tcaggtacag ctacaataac tttgcttaac ccttggttgt
     1621 gtatcttgtc taaacccaaa aacattaatg cacgagattt acctgatgca ggaggggctt
     1681 ttaagagcaa atactgacta ttacgagatt cgaaggcgcg agcttgcata gctcgcatcc
     1741 ccatattatt aactgaggtg ctttctccag tttgttgata atttacttct actaaatttt
     1801 tcatttttat ctcaatttaa cattgtttcg tagtagtgga ataatcgctc tagacgctct
     1861 tcatctgtct taaaatcact tgatttatat agtttttcca ctaacgaatc attctcttta
     1921 tgagcttgtt ttaagtcaaa aggcattttt tcaggatcat aaagttgagc caaacttaaa
     1981 tgtgaatagg attcacgtac agctagtatt ttaaaagcag att
//
