LOCUS       NZ_CP145434             4036 bp    DNA     circular CON 05-APR-2024
DEFINITION  Acinetobacter baumannii strain A20AB02 plasmid pA20AB02d, complete
            sequence.
ACCESSION   NZ_CP145434
VERSION     NZ_CP145434.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39325909
            Assembly: GCF_036870965.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 4036)
  AUTHORS   Moon,D.
  TITLE     Genome sequence of Acinetobacter baumannii in Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4036)
  AUTHORS   Moon,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2024) Division of Antimicrobial Resistance
            Research, National Institute of Health, 187 Osongsaengmyeong2-ro,
            Cheongju-si, 28159, Korea, Cheongju-si, Chungcheongbuk-do 28159,
            South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: flye v. v2.9.3; pilon v. v1.24
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 601.092x
            Sequencing Technology             :: Illumina MiSeq; Minion
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036870965.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 16:42:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,827
            CDSs (total)                      :: 3,732
            Genes (coding)                    :: 3,634
            CDSs (with protein)               :: 3,634
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 23 of 98
            Pseudo Genes (incomplete)         :: 66 of 98
            Pseudo Genes (internal stop)      :: 15 of 98
            Pseudo Genes (multiple problems)  :: 6 of 98
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP145434.1.
            Bacteria and source DNA available from National Institute of
            Health.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4036
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="A20AB02"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pA20AB02d"
                     /geo_loc_name="South Korea"
                     /collection_date="2020-01-23"
     gene            complement(1082..2014)
                     /gene="repM"
                     /locus_tag="VP418_RS19000"
                     /old_locus_tag="VP418_19000"
     CDS             complement(1082..2014)
                     /gene="repM"
                     /locus_tag="VP418_RS19000"
                     /old_locus_tag="VP418_19000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265321.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_000711927.1"
                     /translation="MKKELVVKDNALINASYNLDLSEQRLILLAILEARQSNTPNDKDL
                     TIHAESYINHFNVHRNTAYKVLKDACKSLFDRRFSYQKLTQKGNIENVISRWVQRISYV
                     ENEALVRIKFSDDVVPLITNLEKHFTSYELEQVSSLTSVYAIRLYELLIAWRSTGKVTM
                     VELEELRLKLGIEPNEYKRMGQFKEKVLHLAIDQINKYTDIKAEYEQHKRGRSIIGFSF
                     KFKQKQQPKKLDSKRDPNTPDFFIRMTDAQRHLFGNKLAHDARVQSEYSHLIGTGSYED
                     FAKLLADMLAEEQHFKMFYPLLVEHGYKA"
                     /name="repM"
     gene            complement(3360..>3992)
                     /gene="repM"
                     /locus_tag="VP418_RS19005"
                     /old_locus_tag="VP418_19005"
                     /pseudo=""
     CDS             complement(3360..>3992)
                     /gene="repM"
                     /locus_tag="VP418_RS19005"
                     /old_locus_tag="VP418_19005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265321.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /name="repM"
     Typing          complement(1083..1654)
                     /name="rep_cluster_1280"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(3361..3932)
                     /name="rep_cluster_1280"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgaagctcgt tcctcgcttc gtggggcagt ttttagttaa tcctgtttgt gaaatctaaa
       61 agcaaaagca tttgtaatgt attcgcttcg ctcatacttt ttgaaaagca aaagctccaa
      121 agttcgcacc cattcgggat gctctgtacc taccgtttaa aatcgaaagg gagcttgtaa
      181 tcagagaaaa ggcgagggcg aaattttgat gatgctcaat cgctcgtaga cactcgctcg
      241 gttaattcta tctgtgcttt ctatggtgct tttattggat ttttagtgca ccgataaaag
      301 cacagtaaaa ggcacagaca cttcgcttcg ctgcgcctaa aaacaattac cgtacaagct
      361 cgcttcgctc gtccttcctg gacgtcagga ttccttgtac tttaagggct ggacgccctt
      421 aataaatttt tttttttgcc tttccctttc cgctttcgct ccaagttgga gcgcacttcg
      481 ggcccgcgcc ccctcatcct cctacggagt tgacccaccc ccttttaggt gcatatttcg
      541 cttaggctcg tatgtccttc ggattcgctg aacgcttaca ctaaaacgag gtgggtcaac
      601 tccccttcgg gatagtttga cggggtgggc ttgcccccca acaactaacg acatctgggg
      661 atgtctaaag ttcgtgtcca ctccctttta cgttgtcggc tccccccagt catctccgct
      721 ggggcttcga tgatgttccg ctttcgcttc acaccccttc ggggctttct ttggctaaag
      781 ccaaaatgaa aagcacagat agatttttag agcgagtgtc tacgagtgaa ctgatgaaat
      841 gcaaaaacaa gacacaccct ccctgattac atgctctatt tgctcatagg atgcgatatt
      901 tcgagctttg ctcgcagtgg gtatgtgaat gtagcttgtt ggatttggat cgcttaaaac
      961 gcaatttaga ggggttggtg gctatccacc aatattggcg tattggtggc gccaccttat
     1021 cttgtacata gataaggaag gtcgaaatga cttatctacc attgatagaa tacgacaaga
     1081 tttatgcttt gtaaccatgc tctacaagca aagggtaaaa catcttaaaa tgctgttctt
     1141 ctgcaagcat atccgccagt aattttgcaa agtcttcata gcttccagta ccaattaaat
     1201 ggctgtattc gctttgtaca cgagcatcat gggctagttt gttcccaaat aagtggcgtt
     1261 gtgcatcggt cattctgata aaaaagtcag gtgtgtttgg gtcacgctta gaatctaatt
     1321 ttttcggttg ttgtttctgc ttaaacttaa atgaaaaacc aataattgaa cgaccacgtt
     1381 tgtgttgttc atactctgct tttatatctg tgtacttatt aatttgatca atggcaaggt
     1441 gtaaaacttt ttctttaaat tgccccattc tcttgtattc attgggttct atgcctagtt
     1501 ttaatcttag ctcttctagc tctaccatag tcactttgcc cgtactacgc catgcgataa
     1561 gcaactcata caagcgtata gcgtaaacac tagttaaact gctgacttgc tctagttcat
     1621 aactagtgaa gtgtttttct aaatttgtaa tcaacggtac aacatcatca gaaaacttaa
     1681 tacgaacaag agcttcattc tctacataag atattcgttg tacccatcga cttattacat
     1741 tctcaatgtt gcccttttga gtcagttttt gatagctaaa tctacgatca aataggcttt
     1801 tgcaagcatc tttaagaact ttataggctg tatttctatg aacattgaaa tggttgatat
     1861 agctttcagc atgaatcgtc aaatctttat cattgggtgt atttgattgc ctagcttcaa
     1921 gtatggctaa cagtattaaa cgttgttctg ataggtctaa attataactg gcatttatta
     1981 gtgcattatc tttaacgact agttcttttt tcataagcac acatgtcttt taagtatata
     2041 agtacactct attttattaa gtgtcacttt gcaagataaa ggtgtactta ttgcaagata
     2101 aaggtgtact tattgcaaga taaaggtgta cttattgcaa gataaaggtg tacttatcct
     2161 tatttttatt attatttatc aattaattac agaggctaaa aattaaaaaa ttaaaaatta
     2221 ttaaaaaaag gggagtgctt aaaactgccc tatgtactcg ctaaagctcg tactctattg
     2281 aagctcgttc ctcgcttcgt ggggcagttt ttagttaatc ctgtttgtga aatctaaaag
     2341 caaaagcatt tgtaatgtat tcgcttcgct catacttttt gaaaagcaaa agctccaaag
     2401 ttcgcaccca ttcgggatgc tctgtaccta ccgtttaaaa tcgaaaggga gcttgtaatc
     2461 agagaaaagg cgagggcgaa attttgatga tgctcaatcg ctcgtagaca ctcgctcggt
     2521 taattctatc tgtgctttct atggtgcttt tattggattt ttagtgcacc gataaaagca
     2581 cagtaaaagg cacagacact tcgcttcgct gcgcctaaaa acaattaccg tacaagctcg
     2641 cttcgctcgt ccttcctgga cgtcaggatt ccttgtactt taagggctgg acgcccttaa
     2701 taatcgtttt ttgttgcctt tcactttccg ctatcgctcc aagttgcagc gcacttcgtg
     2761 ctcgcgcccc gtcatcctcc tacggagttg acccaccccc ttttaggtgc atatttcgct
     2821 taggctcgta tgtccttcgg attcgctgaa cgcttacact aaaacgaggt gggtcaactc
     2881 cccttcggga tagtttgacg gggtgggctt gccccccaac aactaacgac atctggggat
     2941 gtctaaagtt cgtgtccact cccttttacg ttgtcggctc cccccagtca tctccgctgg
     3001 ggcttcgatg atgttccgct ttcgcttcac accccttcgg ggctttcttt ggctaaagcc
     3061 aaaatgaaaa gcacagatag atttttagag ggagtgtcta cgagtgaact gatgaaatgc
     3121 aaaaacaaga cacacccccc ctgattacat cctctatttg ctcataggat gggatatttc
     3181 gagctttgct cgcagggggt atgtgaatgt agcttgttgg atttggatcc cttaaaacaa
     3241 aatttagagg ggttggtggc tatccaccaa tattggcgta ttggtggcgc caccttatct
     3301 tgtacataga taaggaaggt cgaaatgact tatctaccat tgatagaata cgacaagatt
     3361 tatgctttgt aaccatgctc tacaagcaaa gggtaaaaca tcttaaaatg ctgttcttct
     3421 gcaagcatat ccgccagtaa ttttgcaaag tcttcatagc ttccagtacc aattaaatgg
     3481 ctgtattcgc tttgtacacg agcatcatgg gctagtttgt tcccaaataa gtggcgttgt
     3541 gcatcggtca ttctgataaa aaagtcaggt gtgtttgggt cacgcttaga atctaatttt
     3601 ttcggttgtt gtttctgctt aaacttaaat gaaaaaccaa taattgaacg accacgtttg
     3661 tgttgttcat actctgcttt tatatctgtg tacttattaa tttgatcaat ggcaaggtgt
     3721 aaaacttttt ctttaaattg ccccattctc ttgtattcat tgggttctat gcctagtttt
     3781 aatcttagct cttctagctc taccatagtc actttgcccg tactacgcca tgcgataagc
     3841 aactcataca agcgtatagc gtaaacacta gttaaactgc tgacttgctc tagttcataa
     3901 ctagtgaagt gtttttctaa atttgtaatc aacggtacaa catcatcaga aaacttaata
     3961 cgaacaagag cttcattctc tacataagat attactggca tttattagtg cattatcttt
     4021 aacgactagt tctttt
//
