LOCUS       NZ_CP145431             1968 bp    DNA     circular CON 05-APR-2024
DEFINITION  Acinetobacter baumannii strain A20AB02 plasmid pA20AB02a, complete
            sequence.
ACCESSION   NZ_CP145431
VERSION     NZ_CP145431.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39325909
            Assembly: GCF_036870965.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Moon,D.
  TITLE     Genome sequence of Acinetobacter baumannii in Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Moon,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2024) Division of Antimicrobial Resistance
            Research, National Institute of Health, 187 Osongsaengmyeong2-ro,
            Cheongju-si, 28159, Korea, Cheongju-si, Chungcheongbuk-do 28159,
            South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: flye v. v2.9.3; pilon v. v1.24
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 601.092x
            Sequencing Technology             :: Illumina MiSeq; Minion
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036870965.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 16:42:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,827
            CDSs (total)                      :: 3,732
            Genes (coding)                    :: 3,634
            CDSs (with protein)               :: 3,634
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 23 of 98
            Pseudo Genes (incomplete)         :: 66 of 98
            Pseudo Genes (internal stop)      :: 15 of 98
            Pseudo Genes (multiple problems)  :: 6 of 98
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP145431.1.
            Bacteria and source DNA available from National Institute of
            Health.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="A20AB02"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pA20AB02a"
                     /geo_loc_name="South Korea"
                     /collection_date="2020-01-23"
     gene            144..467
                     /locus_tag="VP418_RS18950"
                     /old_locus_tag="VP418_18950"
                     /pseudo=""
     CDS             144..467
                     /locus_tag="VP418_RS18950"
                     /old_locus_tag="VP418_18950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966862.1"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA]"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /name="phage holin, lambda family"
     gene            451..927
                     /locus_tag="VP418_RS18955"
                     /old_locus_tag="VP418_18955"
     CDS             451..927
                     /locus_tag="VP418_RS18955"
                     /old_locus_tag="VP418_18955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001625373.1"
                     /GO_function="GO:0003796 - lysozyme activity [Evidence
                     IEA]"
                     /GO_process="GO:0016998 - cell wall macromolecule catabolic
                     process [Evidence IEA]; GO:0009253 - peptidoglycan
                     catabolic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family protein"
                     /protein_id="WP_000229403.1"
                     /translation="MVEINNQRKAFLDMLAWSEGTDNGRQKTRNHGYDVIVGGELFTDY
                     SDHPRKLVTLNPKLKSTGAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGA
                     LPMIDRGDIRQAIDRCSNIWASLPGAGYGQFEHKADSLIAKFKEAGGTVREIDV"
                     /name="glycoside hydrolase family protein"
     gene            924..1385
                     /gene="rzpD"
                     /locus_tag="VP418_RS18960"
                     /old_locus_tag="VP418_18960"
     CDS             924..1385
                     /gene="rzpD"
                     /locus_tag="VP418_RS18960"
                     /old_locus_tag="VP418_18960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage endopeptidase RzpD"
                     /protein_id="WP_000092275.1"
                     /translation="MSRVTAIISALVICIIVCLSWAVNHYRDNAITYKAQRDKNARELK
                     LANAAITDMQMRQRDVAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVRE
                     ATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR"
                     /name="rzpD"
     gene            complement(1417..1710)
                     /gene="bor"
                     /locus_tag="VP418_RS18965"
                     /old_locus_tag="VP418_18965"
     CDS             complement(1417..1710)
                     /gene="bor"
                     /locus_tag="VP418_RS18965"
                     /old_locus_tag="VP418_18965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serum resistance lipoprotein Bor"
                     /protein_id="WP_000738492.1"
                     /translation="MKKMLLATALALLITGCAQQTFTVQNKPAAVAPKETITHHFFVSG
                     IGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ"
                     /name="bor"
ORIGIN
        1 cgctaacaac ctcctgccgt tttgcccgtg catatcggtc acgaacaaat ctgattacta
       61 aacacagtag cctggatttg ttctatcagt aatcgacctt attcctaatt aaatagagca
      121 aatcccctta ttgggggtaa gacatgaaga tgccagaaaa acatgacctg ttggccgcca
      181 ttctcgcggc aaaggaacaa ggcatcgggg caatccttgc gtttgcaatg gcgtaccttc
      241 gcggcagata taatggcggt gcgtttacaa aaacagtaat cgacgcaacg atgtgcgcca
      301 ttatcgccta gttcattcgt gaccttctcg acttcgccgg actaagtagc aatctcgctt
      361 atataacgag cgtgtttatc ggctacatcg gtactgactc gattggttcg cttatcaaac
      421 gcttcgctgc taaaaaagcc ggagtagaag atggtagaaa tcaataatca acgtaaggcg
      481 ttcctcgata tgctggcgtg gtcggaggga actgataacg gacgtcagaa aaccagaaat
      541 catggttatg acgtcattgt aggcggagag ctatttactg attactccga tcaccctcgc
      601 aaacttgtca cgctaaaccc aaaactcaaa tcaacaggcg ccggacgcta ccagcttctt
      661 tcccgttggt gggatgccta ccgcaagcag cttggcctga aagacttctc tccgaaaagt
      721 caggacgctg tggcattgca gcagattaag gagcgtggcg ctttacctat gattgatcgt
      781 ggtgatatcc gtcaggcaat cgaccgttgc agcaatatct gggcttcact gccgggcgct
      841 ggttatggtc agttcgagca taaggctgac agcctgattg caaaattcaa agaagcgggc
      901 ggaacggtca gagagattga tgtatgagca gagtcaccgc gattatctcc gctctggtta
      961 tctgcatcat cgtctgcctg tcatgggctg ttaatcatta ccgtgataac gccattacct
     1021 acaaagccca gcgcgacaaa aatgccagag aactgaagct ggcgaacgcg gcaattactg
     1081 acatgcagat gcgtcagcgt gatgttgctg cgctcgatgc aaaatacacg aaggagttag
     1141 ctgatgctaa agctgaaaat gatgctctgc gtgatgatgt tgccgctggt cgtcgtcggt
     1201 tgcacatcaa agcagtctgt cagtcagtgc gtgaagccac caccgcctcc ggcgtggata
     1261 atgcagcctc cccccgactg gcagacaccg ctgaacggga ttatttcacc ctcagagaga
     1321 ggctgatcac tatgcaaaaa caactggaag gaacccagaa gtatattaat gagcagtgca
     1381 gatagagttg cccatatcga tgggcaactc atgcaattat tgtgagcaat acacacgcgc
     1441 ttccagcgga gtataaatgc ctaaagtaat aaaaccgagc aatccattta cgaatgtttg
     1501 ctgggtttct gttttaacaa cattttctgc gccgccacaa attttggctg catcgacagt
     1561 tttcttctgc ccaattccag aaacgaagaa atgatgggtg atggtttcct ttggtgctac
     1621 tgctgccggt ttgttttgaa cagtaaacgt ctgttgagca catcctgtaa taagcagggc
     1681 cagcgcagta gcgagtagca tttttttcat ggtgttattc ccgatgcttt ttgaagttcg
     1741 cagaatcgta tgtgtagaaa attaaacaaa ccctaaacaa tgagttgaaa tttcatattg
     1801 ttaatattta ttaatgtatg tcaggtgcga tgaatcgtca ttgtattccc ggattaacta
     1861 tgtccacagc cctgacgggg aacttctctg cgggagtgtc cgggaataat taaaacgatg
     1921 cacacagggt ttagcgcgta cacgtattgc attatgccaa cgccccgg
//
