LOCUS       NZ_CP144565             1967 bp    DNA     circular CON 05-APR-2024
DEFINITION  Acinetobacter baumannii strain AB5075 isolate grey variant plasmid
            p3, complete sequence.
ACCESSION   NZ_CP144565
VERSION     NZ_CP144565.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39855236
            Assembly: GCF_036602705.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Cooper,C., Legood,S., Wheat,R.L., Forrest,D., Sharme,P.,
            Haycocks,J.R.J. and Grainger,D.C.
  TITLE     H-NS is a bacterial transposon capture protein
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Grainger,D.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2024) School of Biosciences, University of
            Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. Noc-2021
            Assembly Name                     :: AB5075_UoB_gtr52_SAba13_1.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 41.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036602705.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 15:35:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,936
            CDSs (total)                      :: 3,840
            Genes (coding)                    :: 3,785
            CDSs (with protein)               :: 3,785
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 25 of 55
            Pseudo Genes (incomplete)         :: 28 of 55
            Pseudo Genes (internal stop)      :: 16 of 55
            Pseudo Genes (multiple problems)  :: 12 of 55
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP144565.1.
            Bacteria and source DNA available from David Grainger, School of
            Biosciences, University of Birmingham, UK.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075"
                     /isolate="grey variant"
                     /isolation_source="Agar plate"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="p3"
                     /geo_loc_name="United Kingdom: University of Birmingham,
                     School of Biosciences"
                     /lat_lon="52.45083403 N 1.93441646 W"
                     /collection_date="2021"
                     /collected_by="Charles Cooper"
     gene            join(1148..1967,1..362)
                     /locus_tag="V4Q78_RS19675"
                     /old_locus_tag="V4Q78_19675"
     CDS             join(1148..1967,1..362)
                     /locus_tag="V4Q78_RS19675"
                     /old_locus_tag="V4Q78_19675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271233.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000271233.1"
                     /translation="MYANTQNTQATAERGVPRTHIAPSVDGGSLGIYTDNSANRTTQGF
                     QPIREKFKLLHFARKLLPKERTAHCFYNRITKEEGVSVFLNKLRNKANYGNVMRCANPW
                     ACPVCSAIISEGRKDEVKTAMDWWKAQGGDVLLLTLTAPHYSTTDIKSLKPAMLKARKY
                     MLKGVRATKDLFKHYAIEHYISVFEVTHGKNGFHPHFHILLFTKYHVHNPRGSVMRMQF
                     FEQWKKACEKAGLDQPSYEHGLDLRNGQKAASYVSKWGLEHEMTKGHIKKGKTDSKTPF
                     DLLRDYAEGDENAGKLFRIYFDAFKGTRQLNWSKGLKKLSSKGQEEKTDQELVDETDNV
                     AELMFKLSIELWNPIRKHGRQGELLIKVQEDHTLKKAMEYVKECLGYDGQLRE"
                     /name="protein rep"
     gene            822..1073
                     /locus_tag="V4Q78_RS19680"
                     /old_locus_tag="V4Q78_19680"
     CDS             822..1073
                     /locus_tag="V4Q78_RS19680"
                     /old_locus_tag="V4Q78_19680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000290587.1"
                     /translation="MAVQKRLALTIQPDYLDLLKKVADYQNIPVSTMVMGLLDAQRPVV
                     EAMLKAFQDIEAGKDKQKILSELLASGLEAAAQEIRKD"
                     /name="hypothetical protein"
ORIGIN
        1 aaacagattc taaaacgcct ttcgatttac tccgtgatta tgcagagggt gacgaaaatg
       61 caggaaaatt atttaggatt tactttgatg ctttcaaagg tacacgccaa ttaaattggt
      121 caaaaggttt gaaaaaactc tccagcaaag ggcaagaaga aaaaacagat caagaattag
      181 ttgatgaaac ggacaatgtt gcggagctga tgttcaaatt atctatagaa ctatggaatc
      241 caatacggaa acacggcaga caaggcgaat tgctgattaa ggtgcaagaa gatcacacac
      301 ttaaaaaggc aatggaatat gtcaaagagt gcttaggcta tgatggacaa ctgagggaat
      361 aattatgtat tggggttttt ttctatgtac cgactgtgat cgggtgatgt ctacaaaaaa
      421 cactgaaatg gttcatatca agaatagaga taatcttgtt cgtggtgttt gtggtgactg
      481 tcttaaaaat aaggtcgagt acttaaaaca tagagaaaca gcaaaaaaat atttagaaag
      541 tttgagagcg aaattaaagg ggtcttaggg tgtccctaac aaggtcacag ggtactatgt
      601 gtatccttgc ttacatgttg tcatgttgtc atgtttacaa gtaccgaacg agtgtctacg
      661 agtgacgact ccgcaataaa aactaaaaac cttctctccc tgattacaac gctcccatct
      721 aaaccaagat cgggagtttt tcggctatgc cgactgcaaa acatttgctt attttttgaa
      781 tagatgtatt atgtgactat tagtaacata aggtttttag aatggcagtt caaaaacgat
      841 tagccctcac aattcagccc gactatttgg atttattgaa gaaagtagcg gattatcaaa
      901 atatccctgt atcaacaatg gttatgggct tattagacgc tcaacgccct gtagttgagg
      961 caatgcttaa agcatttcag gatattgagg caggaaaaga taaacaaaaa atcttatctg
     1021 aacttttagc atcgggtctt gaagcagcag ctcaagaaat tagaaaggat taaatagtaa
     1081 agccccaaga atggcagttc ttagggcttc gaatcctgtt gtacgctaat actacgaggt
     1141 aactaaattg tacgctaata ctcaaaatac gcaagcaact gcggagcgtg gcgttccgcg
     1201 aacgcacatc gctccgtcag ttgatggcgg ctcccttggt atatatacgg ataactccgc
     1261 caaccgcact acacaaggct ttcagcccat acgagaaaag tttaaattac tgcattttgc
     1321 tcgaaaatta ctccctaaag aacgtactgc tcactgtttc tataatcgga ttacaaaaga
     1381 agagggtgta tctgtttttt tgaataaatt acggaataaa gccaattatg ggaatgtgat
     1441 gcgctgtgct aatccctggg cttgtcctgt ttgttctgca attatttcag aaggtcgaaa
     1501 agatgaagta aaaacggcta tggactggtg gaaagctcaa ggcggtgatg tattacttct
     1561 tactctaaca gctccccact attcgactac tgatattaaa tctttaaagc ctgcaatgct
     1621 taaagctcga aaatatatgc tcaagggtgt tcgggcgact aaagaccttt tcaaacacta
     1681 tgccattgaa cattacattt ctgtatttga agtgacacac ggaaaaaatg gattccatcc
     1741 acacttccat attctgttat tcactaagta tcacgtacac aatccacgtg gttctgtgat
     1801 gcgtatgcaa ttctttgaac aatggaaaaa ggcatgtgaa aaagcaggat tagaccaacc
     1861 aagctatgaa cacggtttgg atctccgcaa tggtcaaaag gcagcaagct atgtttcaaa
     1921 atggggtttg gaacatgaaa tgacaaaagg acatattaaa aaaggta
//
