LOCUS       NZ_CP144562             1967 bp    DNA     circular CON 05-APR-2024
DEFINITION  Acinetobacter baumannii strain AB5075 plasmid p3, complete sequence.
ACCESSION   NZ_CP144562
VERSION     NZ_CP144562.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39855183
            Assembly: GCF_036601155.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Cooper,C., Legood,S., Wheat,R.L., Forrest,D., Sharma,P.,
            Haycocks,J.R.J. and Grainger,D.C.
  TITLE     H-NS is a bacterial transposon capture protein
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Grainger,D.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2024) School of Biosciences, University of
            Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. NOV-2021
            Assembly Name                     :: AB5075_UoB_1.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036601155.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 15:37:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,909
            CDSs (total)                      :: 3,813
            Genes (coding)                    :: 3,759
            CDSs (with protein)               :: 3,759
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 26 of 54
            Pseudo Genes (incomplete)         :: 27 of 54
            Pseudo Genes (internal stop)      :: 16 of 54
            Pseudo Genes (multiple problems)  :: 13 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP144562.1.
            Bacteria and source DNA available from David Grainger, School of
            Biosciences, University of Birmingham, UK.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075"
                     /isolation_source="tibia/osteomyelitis of diabetes patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="p3"
                     /geo_loc_name="USA: Walter Reed Army Medical Center"
                     /lat_lon="38.976556 N 77.02875 W"
                     /collection_date="2008"
                     /collected_by="Dan Zurawski, WRAIR"
     gene            complement(399..1580)
                     /locus_tag="V4Q77_RS19540"
                     /old_locus_tag="V4Q77_19540"
     CDS             complement(399..1580)
                     /locus_tag="V4Q77_RS19540"
                     /old_locus_tag="V4Q77_19540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271233.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000271233.1"
                     /translation="MYANTQNTQATAERGVPRTHIAPSVDGGSLGIYTDNSANRTTQGF
                     QPIREKFKLLHFARKLLPKERTAHCFYNRITKEEGVSVFLNKLRNKANYGNVMRCANPW
                     ACPVCSAIISEGRKDEVKTAMDWWKAQGGDVLLLTLTAPHYSTTDIKSLKPAMLKARKY
                     MLKGVRATKDLFKHYAIEHYISVFEVTHGKNGFHPHFHILLFTKYHVHNPRGSVMRMQF
                     FEQWKKACEKAGLDQPSYEHGLDLRNGQKAASYVSKWGLEHEMTKGHIKKGKTDSKTPF
                     DLLRDYAEGDENAGKLFRIYFDAFKGTRQLNWSKGLKKLSSKGQEEKTDQELVDETDNV
                     AELMFKLSIELWNPIRKHGRQGELLIKVQEDHTLKKAMEYVKECLGYDGQLRE"
                     /name="protein rep"
     gene            complement(1655..1906)
                     /locus_tag="V4Q77_RS19545"
                     /old_locus_tag="V4Q77_19545"
     CDS             complement(1655..1906)
                     /locus_tag="V4Q77_RS19545"
                     /old_locus_tag="V4Q77_19545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000290587.1"
                     /translation="MAVQKRLALTIQPDYLDLLKKVADYQNIPVSTMVMGLLDAQRPVV
                     EAMLKAFQDIEAGKDKQKILSELLASGLEAAAQEIRKD"
                     /name="hypothetical protein"
ORIGIN
        1 tttgcagtcg gcatagccga aaaactcccg atcttggttt agatgggagc gttgtaatca
       61 gggagagaag gtttttagtt tttattgcgg agtcgtcact cgtagacact cgttcggtac
      121 ttgtaaacat gacaacatga caacatgtaa gcaaggatac acatagtacc ctgtgacctt
      181 gttagggaca ccctaagacc cctttaattt cgctctcaaa ctttctaaat atttttttgc
      241 tgtttctcta tgttttaagt actcgacctt atttttaaga cagtcaccac aaacaccacg
      301 aacaagatta tctctattct tgatatgaac catttcagtg ttttttgtag acatcacccg
      361 atcacagtcg gtacatagaa aaaaacccca atacataatt attccctcag ttgtccatca
      421 tagcctaagc actctttgac atattccatt gcctttttaa gtgtgtgatc ttcttgcacc
      481 ttaatcagca attcgccttg tctgccgtgt ttccgtattg gattccatag ttctatagat
      541 aatttgaaca tcagctccgc aacattgtcc gtttcatcaa ctaattcttg atctgttttt
      601 tcttcttgcc ctttgctgga gagttttttc aaaccttttg accaatttaa ttggcgtgta
      661 cctttgaaag catcaaagta aatcctaaat aattttcctg cattttcgtc accctctgca
      721 taatcacgga gtaaatcgaa aggcgtttta gaatctgttt tacctttttt aatatgtcct
      781 tttgtcattt catgttccaa accccatttt gaaacatagc ttgctgcctt ttgaccattg
      841 cggagatcca aaccgtgttc atagcttggt tggtctaatc ctgctttttc acatgccttt
      901 ttccattgtt caaagaattg catacgcatc acagaaccac gtggattgtg tacgtgatac
      961 ttagtgaata acagaatatg gaagtgtgga tggaatccat tttttccgtg tgtcacttca
     1021 aatacagaaa tgtaatgttc aatggcatag tgtttgaaaa ggtctttagt cgcccgaaca
     1081 cccttgagca tatattttcg agctttaagc attgcaggct ttaaagattt aatatcagta
     1141 gtcgaatagt ggggagctgt tagagtaaga agtaatacat caccgccttg agctttccac
     1201 cagtccatag ccgtttttac ttcatctttt cgaccttctg aaataattgc agaacaaaca
     1261 ggacaagccc agggattagc acagcgcatc acattcccat aattggcttt attccgtaat
     1321 ttattcaaaa aaacagatac accctcttct tttgtaatcc gattatagaa acagtgagca
     1381 gtacgttctt tagggagtaa ttttcgagca aaatgcagta atttaaactt ttctcgtatg
     1441 ggctgaaagc cttgtgtagt gcggttggcg gagttatccg tatatatacc aagggagccg
     1501 ccatcaactg acggagcgat gtgcgttcgc ggaacgccac gctccgcagt tgcttgcgta
     1561 ttttgagtat tagcgtacaa tttagttacc tcgtagtatt agcgtacaac aggattcgaa
     1621 gccctaagaa ctgccattct tggggcttta ctatttaatc ctttctaatt tcttgagctg
     1681 ctgcttcaag acccgatgct aaaagttcag ataagatttt ttgtttatct tttcctgcct
     1741 caatatcctg aaatgcttta agcattgcct caactacagg gcgttgagcg tctaataagc
     1801 ccataaccat tgttgataca gggatatttt gataatccgc tactttcttc aataaatcca
     1861 aatagtcggg ctgaattgtg agggctaatc gtttttgaac tgccattcta aaaaccttat
     1921 gttactaata gtcacataat acatctattc aaaaaataag caaatgt
//
