LOCUS       NZ_CP143513             1240 bp    DNA     circular CON 05-FEB-2024
DEFINITION  Klebsiella pneumoniae strain KP2009864 plasmid pKP2009864_6,
            complete sequence.
ACCESSION   NZ_CP143513
VERSION     NZ_CP143513.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39593715
            Assembly: GCF_036347675.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Maguire,M.
  TITLE     Spatiotemporal and genomic analysis of carbapenem resistance
            elements in Enterobacterales from hospital inpatients and natural
            water ecosystems of an Irish city
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Maguire,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2024) Bacteriology, University of Galway,
            University Road, Galway, Galway 000000, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 81.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/03/2024 23:13:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,841
            CDSs (total)                      :: 5,717
            Genes (coding)                    :: 5,551
            CDSs (with protein)               :: 5,551
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 68 of 166
            Pseudo Genes (incomplete)         :: 101 of 166
            Pseudo Genes (internal stop)      :: 31 of 166
            Pseudo Genes (multiple problems)  :: 27 of 166
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP143513.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP2009864"
                     /isolation_source="Human rectal swab"
                     /db_xref="taxon:573"
                     /plasmid="pKP2009864_6"
                     /geo_loc_name="Ireland"
                     /collection_date="2020"
     gene            439..948
                     /locus_tag="V1671_RS29205"
                     /old_locus_tag="V1671_29205"
     CDS             439..948
                     /locus_tag="V1671_RS29205"
                     /old_locus_tag="V1671_29205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634347.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_023206179.1"
                     /translation="MIVASEHQAKLRQKEIQEIDKKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELVRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 ggataagcac taattagcca gtatacactc cgctagcgga gtgactggtt cagggcttcg
       61 ccccgaaacc cctgaaaacc gtcaatcatg gtgatggctc actacgcgag ccatcaccag
      121 atacaaggtt aaacgggcat tttgatcgtc aaggtcaagc cgctaacgcg gtcgcctatg
      181 gcgaaccctg accctcaaaa tgcccgaccg gagggaggga gctaccttga actttggtgt
      241 tgtctgttgg ttttcataga agagaataga gataaataat aagttattga tttttatagt
      301 tttggttttt tctgatagga cacagctggt gtccgcacgt gaggacacag ctggtgtccg
      361 catgtggctg gacataggac accacaagtc ctatgatggg acaaaaatgt cctatcaaaa
      421 agacaccgag ggataaagat gatcgtagct tcagaacacc aagcaaagct aaggcagaaa
      481 gaaatacagg aaatcgacaa gaaggcatct aaagagcacg aggaggcaaa gaagaacagt
      541 aacttcactc agacataccc aaagggctgg caacgcatta gagagcttgt gagggacaaa
      601 cagggtgctg ccgctatagg tctttactca tttttcgctg aacacataga tcctacatgc
      661 ggtgcagtgg tctgcgatca gcagttttta gctaatcaga tgggtgtttc tactcgaaca
      721 attcgtcgtt ggttagatta tttggaggag aaaggtgctt tggtaagaat accagttgct
      781 ggaaaggttt gtgcttacgc tttagatcct cacgaagtct ggaagggata taacacatca
      841 aaagactact cagcctttgt taccaagaca ttagtgaaca aggatggaga aataaaacgc
      901 cggataatgg ctatgttttc cggagaggag agcggtcaag agcagtagcg aagcgactct
      961 tgacggctcg gaacgacccc caccctcaga aagggggatg gttcgccaca gcgagccatc
     1021 cccataataa gccgcccttt aagcagtaga tcccataaat aaataaaaca gcacatcact
     1081 tttgtaatgt gcggcattcc tttgggacta aaagaagtta gccaggaatg taatacagaa
     1141 actttaccga caaggaggtc atcatgatca cgtcaacaat catcacaatc atcggcttaa
     1201 ttgggagtct cataacgatt taccgagaga tatacccgaa
//
