LOCUS       NZ_CP143512             2042 bp    DNA     circular CON 05-FEB-2024
DEFINITION  Klebsiella pneumoniae strain KP2009864 plasmid pKP2009864_5,
            complete sequence.
ACCESSION   NZ_CP143512
VERSION     NZ_CP143512.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39593715
            Assembly: GCF_036347675.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Maguire,M.
  TITLE     Spatiotemporal and genomic analysis of carbapenem resistance
            elements in Enterobacterales from hospital inpatients and natural
            water ecosystems of an Irish city
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Maguire,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2024) Bacteriology, University of Galway,
            University Road, Galway, Galway 000000, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 81.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/03/2024 23:13:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,841
            CDSs (total)                      :: 5,717
            Genes (coding)                    :: 5,551
            CDSs (with protein)               :: 5,551
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 68 of 166
            Pseudo Genes (incomplete)         :: 101 of 166
            Pseudo Genes (internal stop)      :: 31 of 166
            Pseudo Genes (multiple problems)  :: 27 of 166
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP143512.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP2009864"
                     /isolation_source="Human rectal swab"
                     /db_xref="taxon:573"
                     /plasmid="pKP2009864_5"
                     /geo_loc_name="Ireland"
                     /collection_date="2020"
     gene            complement(931..1272)
                     /locus_tag="V1671_RS29200"
                     /old_locus_tag="V1671_29200"
     CDS             complement(931..1272)
                     /locus_tag="V1671_RS29200"
                     /old_locus_tag="V1671_29200"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_039819495.1"
                     /translation="MPLKGNGNKFINNGIGVHNEAQVSVELNDSTFENNKIGYLEGKLD
                     RIDELFKNETPELAKKELIEELSKAIKRGESEKAESIFEKFDFHKWIASGANIAKIVES
                     LASAMNIHS"
                     /name="hypothetical protein"
ORIGIN
        1 cttttaattc atgcagttgc gatgaaaatc gcggctgcgt taggtgtatg accattttga
       61 ggttgaaaaa taatcaacca tggcgggtga tttacgcagg ttaaggggag atcgtgacaa
      121 aaaaagcgtt cctcactgta tcgttcatgc aggcatgaac gggttatcct ccccgactac
      181 agatagacta caaaagctaa gatgagacta cagataaact acagaagctg atgctggaca
      241 ggcattcacc tggtataaga ctacagaatt acatctctcc ttcagcttat acgtcacttt
      301 tgcgtcattt ttacatcact ccttaagttc atacgtcact tttacgtcag tttcatcctc
      361 tgtgccattt gtacatcacc cccttcctga acgtgctgac agcgggtttt ccggctgcgc
      421 cggcaaggtc tcacagttac gcaataaatt gcccgcccgt tcaccgtttt aggcaaggcg
      481 aaagatactc ttttttgggg ttgggtttga attcaggccg aaacctgatg ccaggcagcc
      541 ggctgcataa cgattcacaa cctcagaaat catcagcgcc attctgagcc gttttcaggg
      601 ggtaagacat gcggttttga ggttcaggcg ggaaaatcgc gcacagcccg tctgaggggt
      661 gcgcgcaatg agacgttatg gtaaattcag aaagacaatg tggggggggg tatgatttca
      721 ataattaatt gcacagctga aagctgcggc attgggtaca gtatagattc gtcagctgat
      781 gtttatatgt ctggtaatga ggccattaat tgtggagtgg gcctgcatat caacgatcgt
      841 gaaatccgtc aggctcagaa agcaaagtta cctgacgggc atttcaatat gagtattgtg
      901 gcgtatttgg ttcgagtata tttacaaagg ttacgaatga atgttcatag cagacgctag
      961 cgactcaacg atctttgcaa tgttagcgcc agaggctatc cacttgtgaa agtcgaattt
     1021 ttcgaaaata gactctgctt tttctgactc cccacgcttt atagccttgc taagctcttc
     1081 tattaactct tttttagcga gttccggcgt ttcatttttg aagagttcat ctatgcgatc
     1141 gagcttaccc tctaagtacc ctattttatt attttcaaaa gtagaatcat taagctccac
     1201 actgacttgg gcttcgttgt gaacgccgat accgttgtta atgaatttat ttccattacc
     1261 ttttagcggc atagttcctc cagttttggt taaagttagc ctaatgcccc cgtggtgggt
     1321 atataagacc acggggagcg tagcgacctt cgtcaagctc tcttcttgtg tgtctcacct
     1381 tgcaagggct tgattgtgtg ggtgtcgtgt tcgactttct tgcaatcaca cgccaccgct
     1441 tactactgcc ttcgtcgctc attttatcag gtgcttgtta tcgtacagcg agacggggta
     1501 gagcctaact ctttcgcggt taagttacgt tcccaccaat ttgcctgttt atcctgccgg
     1561 agtccggggc gtagacctga gcgtctaagg tgcagatatg attttaatgt cgttgaatgg
     1621 tattaagctg gtagtgacat gactagccag ccctgctaag atttgattgc tacgtctgat
     1681 cttggcaggt atctgcaaga attagagtac cgaagccctg tgattctgtc acggggcttt
     1741 tgtacattta aagcatctac atcaaaacca tcctttccaa acctaagctg acaacgctcg
     1801 ccgcagtact gactagcgga gtctgtcagt gcgaggaagc gtcatatctg ccttgctgag
     1861 ataagcactg tcacacggag tctgaacgtg aacaaacaac aaaagtcagc cctgaacatg
     1921 ccgaaattta tccgtggcca gtaatacccc ggtattactc tttatttctt tattttcatg
     1981 taattacagt ggatttttaa tacctgggta ttactcgtaa aaacggaatg ttcctttttt
     2041 tt
//
