LOCUS       NZ_CP143352             2025 bp    DNA     circular CON 21-APR-2024
DEFINITION  Acinetobacter baumannii strain 2023CK-01512 plasmid unnamed4,
            complete sequence.
ACCESSION   NZ_CP143352
VERSION     NZ_CP143352.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38788845
            Assembly: GCF_034331205.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2024) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
REFERENCE   3  (bases 1 to 2025)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2023) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034331205.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 14:32:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,167
            CDSs (total)                      :: 4,073
            Genes (coding)                    :: 3,979
            CDSs (with protein)               :: 3,979
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 34 of 94
            Pseudo Genes (incomplete)         :: 57 of 94
            Pseudo Genes (internal stop)      :: 10 of 94
            Pseudo Genes (multiple problems)  :: 7 of 94
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP143352.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="2023CK-01512"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2023-11-20"
     gene            19..297
                     /locus_tag="V1235_RS20825"
                     /old_locus_tag="V1235_20800"
     CDS             19..297
                     /locus_tag="V1235_RS20825"
                     /old_locus_tag="V1235_20800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001143137.1"
                     /translation="MPTQKPRIALTVPDEINQTLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKSDKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
     gene            294..1298
                     /locus_tag="V1235_RS20830"
                     /old_locus_tag="V1235_20805"
     CDS             294..1298
                     /locus_tag="V1235_RS20830"
                     /old_locus_tag="V1235_20805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_000568086.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWIVNKTLSVEGS
                     YSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDVNETWHLKNKNEVLAWIRAVGETAILKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGLEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEVLLLEYISKLEMSDVYMLKDDVLDSLPHRLRLTYQSWLNGDDLKQILPH
                     NTFYRYKKALREYGIDISTKSPKEKNNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            1366..1590
                     /locus_tag="V1235_RS20835"
                     /old_locus_tag="V1235_20810"
     CDS             1366..1590
                     /locus_tag="V1235_RS20835"
                     /old_locus_tag="V1235_20810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000752628.1"
                     /translation="MADANTTAFEFLGKTVSFEYVRHIQITEQSSIDFREKVSGVITNI
                     VLSLNSEPEISINDGDFYSLSDLINFTVS"
                     /name="hypothetical protein"
ORIGIN
        1 agttacacct aaaacaatat gcctactcaa aaacctagaa tcgccttaac tgttcctgat
       61 gaaattaatc aaactttaga tcgtttgtac gaactcactg gtacgcctaa atcgaagctt
      121 atcgtagaga tgttggagca atatgttcct attcttgagc aagtagtcga caccttggaa
      181 aaaatcaaat ctgacaagga aaacggtaag gaaatagcta aaaaatttgc tcaagatatg
      241 ctttttgatg gtcaggaaat gttaggcatt atggctaaag aggctcgcga tttatgattg
      301 attgggcatc tgcaatactc ccttgtaaac acgaccctag taagctcata tcgggcgttg
      361 ttatgtcatt tgacccattg ggtaacaatg aatggattgt taataaaaca ttgagtgttg
      421 agggttctta ttcttcaaag attcaaatta aatctcatac tgataatcag atttacattt
      481 cgggcaaccc aactaaattt ttacaaggtc ataacctatt cggttctaat gacctagttt
      541 caataatgga ttcttgtttt gaaaagcttt tgacatacga taatttaggt ttatgccccg
      601 acccatttca aagagctgct attaaagatg gttactatga actgactagg gtggatgtaa
      661 atgaaacttg gcatctgaaa aataaaaatg aggttctagc ctggattcgg gctgtaggtg
      721 aaacagcaat tcttaaacat cgtggggctg gtcaattctc tggtgatact gcttattttg
      781 gtaaaaattc tcgccgatgg tctctaaagt gttactccaa aggtttagaa attttggcaa
      841 aaggtcataa attaccacag gaattatgta ttcctgaaat gattgaatat gcaaacaaag
      901 ccttgagaat agagggtgtt ataagacaat tagagcttaa aagacgtcat ttaaatgtag
      961 ctgctaattg ggatatagac acagcagagg tgttactcct agaatatata tctaaattag
     1021 aaatgagtga tgtctatatg ctcaaagatg atgttcttga ctctttgcct catcgcctac
     1081 gccttacata tcaatcatgg ctaaatggtg atgatctgaa gcagatttta ccccataaca
     1141 ctttttatcg ttataaaaag gctcttcgtg aatatgggat agatatttct acaaagtcac
     1201 ctaaagagaa aaataatgta attccattaa ttcgggtttt agaagcaaaa cctgtaggta
     1261 ttcctgactg ggcttatgaa aagggtctag tcgcttaaac cgctgcatag agggacggca
     1321 atccccctat acagctaacc acatcgatct ttcgaggaga tcatcatggc tgatgccaat
     1381 actactgctt tcgaattttt aggcaagact gtttcatttg aatatgtccg ccacattcaa
     1441 ataactgaac aatcttcgat tgattttaga gaaaaggttt ctggagtcat cactaatatt
     1501 gttctcagtc tcaattctga acctgaaatt tctataaatg atggggattt ttactcccta
     1561 tctgatttaa ttaatttcac agtttcctaa atataggact agattccacc ccaaaagcgt
     1621 ccatgtggcg ctttttttgt atgacaaaac taccatttgc aatacatttg cctatcctgc
     1681 gctactaaat attactgata taacctttag ttccagagcg agtgtctacg agtgaactga
     1741 ttccataaaa atcttgaaac ttccctctct gattacagct cccttttgcc taagaacagt
     1801 aagaaccgag ctatgctcgc atatccaccc accaacaccc gctcaggcag acttgtcgcc
     1861 gagggggtgt gcagtgttag taatactgca catttgtacc atagtggtat tctgatacga
     1921 gacaatacta gataaacact acatttcccc ccctgcacat ttgtaccact ttcgggaatt
     1981 attctattta ctttgttatt ttagagtgct acattaatcc aaaat
//
