LOCUS       NZ_CP142976             1916 bp    DNA     circular CON 31-JAN-2024
DEFINITION  Klebsiella pneumoniae strain B19293 plasmid pB19293_5, complete
            sequence.
ACCESSION   NZ_CP142976
VERSION     NZ_CP142976.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39499960
            Assembly: GCF_036287785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Maguire,M.
  TITLE     Spatiotemporal and genomic analysis of carbapenem resistance
            elements in Enterobacterales from hospital inpatients and natural
            water ecosystems of an Irish city
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Maguire,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2024) Bacteriology, University of Galway,
            University Road, Galway, Galway 000000, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/31/2024 01:30:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,951
            CDSs (total)                      :: 5,828
            Genes (coding)                    :: 5,648
            CDSs (with protein)               :: 5,648
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 60 of 180
            Pseudo Genes (incomplete)         :: 124 of 180
            Pseudo Genes (internal stop)      :: 28 of 180
            Pseudo Genes (multiple problems)  :: 28 of 180
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP142976.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B19293"
                     /isolation_source="seawater"
                     /db_xref="taxon:573"
                     /plasmid="pB19293_5"
                     /geo_loc_name="Ireland"
                     /collection_date="2019"
     gene            718..1020
                     /locus_tag="VYI57_RS29505"
                     /old_locus_tag="VYI57_29510"
     CDS             718..1020
                     /locus_tag="VYI57_RS29505"
                     /old_locus_tag="VYI57_29510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     gene            complement(1279..1515)
                     /locus_tag="VYI57_RS29510"
                     /old_locus_tag="VYI57_29515"
     CDS             complement(1279..1515)
                     /locus_tag="VYI57_RS29510"
                     /old_locus_tag="VYI57_29515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(1681..1854)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          2..408
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.912"
                     /coverage="81.0"
                     /evalue="3.26e-160"
ORIGIN
        1 atttcctggg agataccagg aaggagctta acagggaaga gataaggccg cggcgaagcc
       61 gtttttccat aggctccgcc cccctgacaa acatcatgaa atctgacgct caaatcagtg
      121 gtggcgaaac ccgatgcggc ttaaagatac caggcgtttc cccctggtgg ctccctcgtg
      181 ctcccccgca ttcctgcctt tcggtttacc ggtgtcattc cgctgttatg gccgcgttta
      241 tctcattcca cgcctgacac tcagttccgc gaaggcagtt cgctcctgga tggactgtat
      301 gcacgaaccc cccgttcagt ccgactgctg cgccttatcc ggtaactatc atcttgagtc
      361 caacccggaa agacacgact tatcgccact ggcagcagcc actggtaact gatttagagg
      421 agttagtctt gaagttatgc gcctgttaag gctaaactga aagaacagat ttggttactg
      481 cgctcctcgt aagccagtta ccacggttca aagagttgct gctctgagaa ccttcgaaaa
      541 accgccttgc agggcggttt tttcgtttac agagcaagag attacgacgc cacagaaagg
      601 atctcaagaa gatccttcac cgtaatggaa atctatccaa tccgagcaca taggatacac
      661 atcgttataa aacatcggat attatgatcc caattaaaat aagctcgagg ataaaaaatg
      721 agttcaatgg tttactgccg aggatgtggc aaggaaatac acgaaacagc aaagtcatgc
      781 ccgcactgcg gagccacaaa cgcctcttca ggttcaggtg aaaaaagtag aatcgcagcc
      841 gcgctattag cattcttcct tggtggattt ggcgcacata aattttactt aggaaaaata
      901 ggacaggggt tcctgtatct aattttttgc tggacattca tacccgcgat catcgcgttt
      961 attgagttta ttatttatct atgcgattcc gatgaaaaat tcgcacgaaa atatggctaa
     1021 ctcatagcaa aaaaaagccc cctaagggct ttttttgtac ctgacggtca gaccgattaa
     1081 acataacatc ccttgcccgc acccccgcag gcgccctcag cgcaatcctg ctgcatcagg
     1141 gccgtttcca gcacctttcc tcaccagtat cccggaaaaa cgcccctgat gatttctgcg
     1201 cgactgcatg gctatgcacg caggtgaatg gcaggtgatt tcgcagcgtc agcaccacta
     1261 aaccgccaaa agccaaaatc agcggcgcgg cgcgcgcgga cgtgaccagg caaaatcgga
     1321 ctgctgccgc tcatcctcac gtaatgcacg ctggcggtcg gcgtaacgct gcaactcaat
     1381 ttgcgcacgc gctctgttca ggacgatgtg ccggttaggc tgatttagct ttttacctga
     1441 cgctctttca gctgcggcaa cagcatcatc aagaaatttt ttctctgcag gcgtcaagtt
     1501 tgtcagtctg gccataacgt tctccagtca gaataaatca gcacagtctg ccagacacag
     1561 tagaaacgat gaagcgccag cgacggtgaa aggcagtcag aaacggtgaa cgggagcgga
     1621 ttttaatccg gtgccgtgag gcgttggaca agccgcaggc gcgtcattag cttttagcgg
     1681 gtttcggggc gcagccctga accagtcacg tagcgctagc ggagtgtata ctggctgact
     1741 atgttggcac ggatgtggaa atcagtgaag tgcttcatgt agcaggagaa aaaaggcggc
     1801 accagcgcgt cagcaggata tgtagtacag gatatattcc gcttcctcgc tcactgactc
     1861 gctgcgctcg gtcgttcggc tgcggcgagc ggtgccggct tacaggcggg gcggaa
//
