LOCUS       NZ_CP142970             2511 bp    DNA     linear   CON 31-JAN-2024
DEFINITION  Klebsiella pneumoniae strain KP1906522 plasmid pKP1906522_5,
            complete sequence.
ACCESSION   NZ_CP142970
VERSION     NZ_CP142970.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39501656
            Assembly: GCF_036287765.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Maguire,M.
  TITLE     Spatiotemporal and genomic analysis of carbapenem resistance
            elements in Enterobacterales from hospital inpatients and natural
            water ecosystems of an Irish city
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Maguire,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2024) Bacteriology, University of Galway,
            University Road, Galway, Galway 000000, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 106.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/31/2024 01:21:43
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,691
            CDSs (total)                      :: 5,566
            Genes (coding)                    :: 5,392
            CDSs (with protein)               :: 5,392
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 174
            CDSs (without protein)            :: 174
            Pseudo Genes (ambiguous residues) :: 0 of 174
            Pseudo Genes (frameshifted)       :: 92 of 174
            Pseudo Genes (incomplete)         :: 97 of 174
            Pseudo Genes (internal stop)      :: 31 of 174
            Pseudo Genes (multiple problems)  :: 38 of 174
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP142970.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP1906522"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKP1906522_5"
                     /geo_loc_name="Ireland"
                     /collection_date="2019"
     gene            <1..197
                     /locus_tag="VYI59_RS28440"
                     /old_locus_tag="VYI59_28445"
     CDS             <1..197
                     /locus_tag="VYI59_RS28440"
                     /old_locus_tag="VYI59_28445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001091325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_329522969.1"
                     /translation="IITHVMDHEFVSKLIDLAMRNAEKHLLKKAWKKNADEKLSEVDFK
                     EVKQALAKMHYTVLAESIC"
                     /name="hypothetical protein"
     gene            297..539
                     /locus_tag="VYI59_RS28445"
                     /old_locus_tag="VYI59_28450"
     CDS             297..539
                     /locus_tag="VYI59_RS28445"
                     /old_locus_tag="VYI59_28450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="WP_038431824.1"
                     /translation="MIDEFHVMYMYKKIQAEAATTDIKTLEQLLKKFRRVVNERREEHY
                     QEIGEKKARKLKMKRAQRLLEKMVCDRVSPEDLRA"
                     /name="DNA-binding protein"
     gene            647..997
                     /locus_tag="VYI59_RS28450"
                     /old_locus_tag="VYI59_28455"
     CDS             647..997
                     /locus_tag="VYI59_RS28450"
                     /old_locus_tag="VYI59_28455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6404 family protein"
                     /protein_id="WP_038431823.1"
                     /translation="MSFEAKKEHAIAIMESKKMWRSNYAPPLLRLAWKAGLKIPPLPFA
                     TFWQITLLMGGWFGPAWGICMWFSSWKDSGMQPGVAFVSSMVAGICFGVLMAAYHWWRK
                     VVNNLPDWDSLE"
                     /name="DUF6404 family protein"
     gene            1044..2171
                     /locus_tag="VYI59_RS28455"
                     /old_locus_tag="VYI59_28460"
     CDS             1044..2171
                     /locus_tag="VYI59_RS28455"
                     /old_locus_tag="VYI59_28460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="WP_021441532.1"
                     /translation="MGKIKYWLIAGFIILLAIVYTAISDRYSTLSRLKSAGENGDVEAQ
                     YALGLMYLYGEILDVDYQQAKIWYEKAATQNDPRAQVKLGLMYANGLGVNQDYQQAKSW
                     YEKASVQNDVDAQFLLGEMYNDGLGVGQDYQQAKMWYEKAAAQNDERAQVNLAVLYAKG
                     NGVEQDYRQAKSWYEKAAAQNSPDAQFAIGILYANANGVEQDYQQAKDWYEKAAEQNFA
                     NAQFNLGMFYYKGEGVNQNFQQAREWFEKAASQNQLNAQYNLGQIYYYGQGVTQSYRKA
                     KEWFEKAAGEGHVDAQYNLGVIYENGEGVGQDFHQARAWYEKAASQNDAQAQFDLGVMN
                     ELGQGGSINLKQARTWFGLACNNGHKEGCERYENN"
                     /name="SEL1-like repeat protein"
ORIGIN
        1 tgattataac gcatgtaatg gatcatgagt ttgtcagtaa actaatcgat ctggcgatga
       61 gaaatgcgga gaagcatctt ctgaaaaaag catggaaaaa gaacgctgat gaaaaactgt
      121 ctgaggtgga ttttaaagag gttaagcagg cattagccaa aatgcattac actgttctgg
      181 cggaatcaat atgttgatgt gttctgacgt ctatctgccc cttcatgggg ctgataacaa
      241 atctgatttg aaagctaaaa atggcaatga aaacatactc tatacaagga gccaaaatga
      301 ttgatgaatt tcatgtgatg tatatgtata aaaaaatcca agcagaagct gcaaccaccg
      361 acattaaaac acttgaacag cttttgaaaa agttcaggag ggtggtcaat gaacgtcgtg
      421 aagaacacta tcaggaaata ggtgagaaaa aagcgcgtaa gttgaaaatg aaaagagcac
      481 aaagattgct tgagaaaatg gtgtgcgacc gagtttcgcc agaagattta agggcgtgac
      541 tattagagat atttttgaca taatcacatg aaaatgataa tcattattgt ctattgtgtc
      601 tttttgtcga tagataggtg agcgaaggga atctggaggg aactgtatga gctttgaagc
      661 taaaaaggaa catgccattg ccatcatgga aagcaagaaa atgtggcgta gtaactatgc
      721 gcctcctttg ctacgcctcg catggaaagc tggcctcaag atcccaccgt tgccttttgc
      781 cacgttctgg caaataacct tgctgatggg aggttggttt ggtccggcat gggggatttg
      841 tatgtggttt tcttcatgga aggacagtgg tatgcagcct ggcgttgcat ttgtctcaag
      901 catggtcgca ggtatttgct ttggtgttct tatggctgcg tatcattggt ggcgaaaggt
      961 agttaacaat ctgcctgact gggatagtct ggagtaaaga tctctgtagt ggctatataa
     1021 cctctaaatg gactgggtgt gagatgggaa aaataaaata ttggttaata gcgggattta
     1081 ttatccttct tgcaattgtt tacactgcta tcagtgacag gtattctacg ctttctaggt
     1141 tgaaatcagc aggtgaaaac ggagatgtag aagctcagta tgcgttgggt ctcatgtatt
     1201 tatatggaga aatactggat gtcgattatc agcaggcaaa gatttggtat gaaaaagccg
     1261 ctacccaaaa tgatccgcgt gcacaggtta aactcggttt gatgtatgca aatggtctcg
     1321 gggtaaatca ggattatcaa caggccaaat cttggtatga aaaagcatcg gttcaaaatg
     1381 atgttgatgc gcaatttttg cttggagaaa tgtataacga tggtctcggg gtaggccaag
     1441 actaccaaca ggcaaagatg tggtacgaaa aagctgctgc tcaaaatgat gagcgtgctc
     1501 aggtcaatct cgctgttcta tacgcaaagg gtaatggggt agaacaggat tatcgtcagg
     1561 ccaaaagctg gtatgaaaag gctgcagctc aaaatagccc tgatgcgcag ttcgccattg
     1621 gaattctgta tgccaatgct aatggtgtag agcaggacta tcagcaggca aaagactggt
     1681 atgagaaagc agcagaacaa aatttcgcca atgctcagtt taatcttggt atgttctatt
     1741 acaaaggtga gggagttaat caaaactttc agcaagccag agaatggttt gaaaaagccg
     1801 cgtctcaaaa tcagctgaat gctcaatata atttaggtca gatctattac tacggtcagg
     1861 gcgtaactca gagctatcga aaggctaagg aatggttcga aaaagcagct ggggaaggtc
     1921 atgtcgatgc ccaatataac cttggcgtaa tatacgaaaa tggtgaaggg gttgggcagg
     1981 actttcatca ggcgagagct tggtatgaaa aggcagcttc gcaaaacgat gcgcaggcac
     2041 agtttgatct tggtgttatg aatgagcttg gtcagggggg aagtataaat ctgaaacaag
     2101 caagaacttg gtttgggctg gcatgcaata atgggcataa ggaaggttgc gaacgttatg
     2161 aaaataattg aaatggtttt ttaggggatt ttttgtcata actaaattta attttaactt
     2221 tataatttat tttgattctt ttttgatatg caaaaatata gtgtgaggag aggggcgata
     2281 aataatatac aaaacattaa tacgaataag aatagttagt agtaaatagg ttaaagcctc
     2341 tggaacttca ggatttttta caatgaacaa aggcgtttgc ttggttaata acccggaaac
     2401 aaacacctgc tcatgtcagt caggcactgt agcgaaagaa ttgttttata caacagcaac
     2461 tgaacagtta ggtggtggta gccatggtgg cggcacaaca gtggtaaaag a
//
