LOCUS       NZ_CP142924             2021 bp    DNA     linear   CON 19-FEB-2024
DEFINITION  Escherichia coli strain B19429 plasmid pB19429_5, complete sequence.
ACCESSION   NZ_CP142924
VERSION     NZ_CP142924.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39500200
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Maguire,M.
  TITLE     Spatiotemporal and genomic analysis of carbapenem resistance
            elements in Enterobacterales from hospital inpatients and natural
            water ecosystems of an Irish city
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Maguire,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2024) Bacteriology, University of Galway,
            University Road, Galway, Galway 000000, Ireland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. 0.4.9
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 156.0x
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 02/19/2024 10:32:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP142924.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="B19429"
                     /isolation_source="Estuary"
                     /db_xref="taxon:562"
                     /plasmid="pB19429_5"
                     /geo_loc_name="Ireland"
                     /collection_date="2019"
     gene            12..470
                     /locus_tag="VYI51_RS00005"
                     /old_locus_tag="VYI51_26595"
     CDS             12..470
                     /locus_tag="VYI51_RS00005"
                     /old_locus_tag="VYI51_26595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000503763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="WP_071961623.1"
                     /translation="MGEGSALPVGVPVPWPSATPPTGWLKCNGAAFSSEKYPNLAKVYP
                     TLKLPDLRGEFIRGWDDGRGVDAGRVILSIQGWLTGSHYHNIRSWDAWDNTVLVPNDRG
                     GDSLLSTDNAVQEGAINGKFTSQYRTELSGGNETRPRNIAFNYIVRAA"
                     /name="phage tail protein"
     gene            470..1081
                     /locus_tag="VYI51_RS00010"
                     /old_locus_tag="VYI51_26600"
     CDS             470..1081
                     /locus_tag="VYI51_RS00010"
                     /old_locus_tag="VYI51_26600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001057728.1"
                     /GO_process="GO:0098004 - virus tail fiber assembly
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WP_000367942.1"
                     /translation="MDNAILNSELIAIQAGNIIVYNYDGGNREYISASTEYLAVGVGIP
                     AHSCLDAPGSHKAGYAILRSEDLSSWEYVPDHRGETVYSIDTGNPEEITVLGDYPENTT
                     TIAPLTPYDKWDGEKWVVDTEAQHSAAVEAAETKRQSLIDTAMDSISLIQLKLRAGRKL
                     TQAETTQLNSVLDYIDELNAMDLTTAPDLNWPEKQLSTAS"
                     /name="tail fiber assembly protein"
     gene            complement(1087..1584)
                     /locus_tag="VYI51_RS00015"
                     /old_locus_tag="VYI51_26605"
     CDS             complement(1087..1584)
                     /locus_tag="VYI51_RS00015"
                     /old_locus_tag="VYI51_26605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000503756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="WP_072196854.1"
                     /translation="MGEGSALPVGVPVPWPSATPPTGWLKCNGAAFSSEKYPNLAKAYP
                     TNKLPDLRGEFIRGWDDGRGIDPGRSILSEQGYATEDHAHGLPSKSTVATDSSINFYFD
                     EAWATSGNTGVIRWGNTSDAGLPAPNYGTFKTYKQSVANLGTAGLETRPRNIAFNYIVR
                     AD"
                     /name="phage tail protein"
     gene            complement(1595..>2021)
                     /locus_tag="VYI51_RS00020"
                     /old_locus_tag="VYI51_26610"
     CDS             complement(1595..>2021)
                     /locus_tag="VYI51_RS00020"
                     /old_locus_tag="VYI51_26610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003805954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="WP_170855032.1"
                     /translation="GEGSALPVGVPVPWPLETPPTGWLKCNGAAFSSEMYPKLAKAYPT
                     NKLPDLRGEFIRGWDDGRGIDAGRTLLSGQDGTSFSHYGGNFDIGSGHSINNYDQIVSN
                     QPGFSRFSFAGPSRGDGVNYVTIRPRNIAFNYIVRAA"
                     /name="phage tail protein"
ORIGIN
        1 aaaacgttgg tttgggggaa ggctctgcac tgcccgttgg cgtgcccgtt ccgtggccat
       61 cagccacacc tccaacgggg tggctgaaat gcaatggcgc agcattttct tctgaaaagt
      121 acccaaatct ggcaaaggtt tacccaacgt taaaattacc tgatttacgc ggtgagttta
      181 tccgtggttg ggatgatggg cgaggtgtgg atgcgggaag ggtcatctta agcatacagg
      241 ggtggttaac aggaagtcat tatcataata ttcggtcatg ggacgcgtgg gataacacgg
      301 tattggtgcc aaatgacaga gggggggata gcctgttgtc gacagataac gccgtccaag
      361 aaggagcgat taatggtaaa tttaccagtc aatacagaac ggagttatct ggggggaatg
      421 aaacccgccc acgtaacatt gccttcaatt atattgtgag agcagcataa tggataatgc
      481 gatattaaat agcgaactta tagccataca ggcaggaaac attatcgttt ataactatga
      541 tggtggtaat cgggaatata tttctgcatc aactgaatat cttgctgttg gcgttggtat
      601 tccggcacat tcttgtttgg atgctccagg ctcacataaa gcaggttatg cgattctccg
      661 ttcagaggat ttaagttcat gggagtatgt gccagatcat cgtggcgaaa ctgtctatag
      721 cattgacaca gggaatcccg aagaaatcac ggtgttgggt gactatccgg aaaatacaac
      781 cactatcgcc ccgctaacac catacgacaa atgggatgga gagaaatggg tggttgatac
      841 tgaggctcaa catagtgcag ctgtagaggc agcagaaaca aaacgtcagt cattgattga
      901 tactgcgatg gattccatta gtctgattca gttgaaatta cgggctggac ggaagttgac
      961 gcaggcagaa accacgcagc ttaactccgt gctagattat atagacgagc tgaacgcgat
     1021 ggatttaacc acggcaccag atctcaactg gcctgaaaaa caactttcta cagccagttg
     1081 atataattaa tccgccctca caatataatt aaatgcaata ttacgagggc gggtttctaa
     1141 gccagcagta cctaaattag ctacggactg tttatatgtt ttaaaagttc cataattagg
     1201 ggctggcaat cctgcatcgc ttgtgttccc ccatctgata actcccgtat taccactagt
     1261 agcccatgcc tcgtcaaagt agaaattaat tgagctgtca gttgctacgg ttgattttga
     1321 cggtaatccg tgagcatgat cctccgttgc atatccttgc tcgcttaaaa tagagcgacc
     1381 tggatcaatc ccgcgcccgt catcccagcc acgaatgaac tcaccacgta aatcaggcaa
     1441 tttatttgtc gggtaagcct ttgccagatt tgggtacttt tcagaagaaa atgctgcacc
     1501 attgcatttc agccaccccg ttggaggtgt ggctgaaggc cacggaacag ggacaccaac
     1561 aggtaatgca gagccttctc ccaaaccaac gttttcatgc cgcccttacg atataattaa
     1621 acgcaatgtt acgaggacga atggttacat aattaacccc atcacctcgt gaaggccctg
     1681 caaatgaaaa acgggaaaat cctggttggt tagaaacaat ttggtcatag ttattgattg
     1741 aatgaccaga cccaatgtcg aaattacctc cgtaatgaga aaaacttgta ccatcctgcc
     1801 ctgaaagcag ggtacgtccc gcatcaatcc cgcgcccatc atcccagcca cggataaatt
     1861 caccgcgtaa atccggtaat ttattggtgg ggtaggcttt tgccagtttg ggatacattt
     1921 cagaagaaaa tgctgctccg ttacatttta gccagcccgt tggtggtgtt tctaagggcc
     1981 acggaacggg cacaccaaca ggcagtgcag agccttcccc c
//
