LOCUS       NZ_CP142859             2473 bp    DNA     circular CON 31-JAN-2024
DEFINITION  Staphylococcus hominis strain Sh8213 plasmid pSh8213-4, complete
            sequence.
ACCESSION   NZ_CP142859
VERSION     NZ_CP142859.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39497361
            Assembly: GCF_036287195.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Tang,S., Chen,L., Wu,H., Li,X. and Yu,Z.
  TITLE     Staphylococcus hominis strain Sh8213
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Tang,S., Chen,L., Wu,H., Li,X. and Yu,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2024) Department of Otolaryngology, Zhuhai
            People's Hospital, Kangning Road No. 79, Zhuhai 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hifiasm v. 0.13-r308; Canu v. 1.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 77.78x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/30/2024 12:02:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,427
            CDSs (total)                      :: 2,343
            Genes (coding)                    :: 2,279
            CDSs (with protein)               :: 2,279
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 18 of 64
            Pseudo Genes (incomplete)         :: 47 of 64
            Pseudo Genes (internal stop)      :: 18 of 64
            Pseudo Genes (multiple problems)  :: 17 of 64
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP142859.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="Sh8213"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /plasmid="pSh8213-4"
                     /geo_loc_name="China: Kunming"
                     /lat_lon="25.05 N 102.68 E"
                     /collection_date="2023"
                     /collected_by="Li Chen"
     gene            1..735
                     /gene="erm(C)"
                     /locus_tag="VXJ98_RS12125"
                     /old_locus_tag="VXJ98_12125"
     ARG             2..732
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1183..1659
                     /locus_tag="VXJ98_RS12130"
                     /old_locus_tag="VXJ98_12130"
     CDS             1183..1659
                     /locus_tag="VXJ98_RS12130"
                     /old_locus_tag="VXJ98_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            2354..2413
                     /gene="ermCL"
                     /locus_tag="VXJ98_RS12135"
                     /old_locus_tag="VXJ98_12135"
     CDS             2354..2413
                     /gene="ermCL"
                     /locus_tag="VXJ98_RS12135"
                     /old_locus_tag="VXJ98_12135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methylase leader peptide ErmCL"
                     /protein_id="WP_002497446.1"
                     /translation="MGIFSIFVISTVHYQPNKK"
                     /name="ermCL"
     ARG             2..735
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          1184..1669
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgaacgaga aaaatataaa acacagtcaa aactttatta cttcaaaaca taatatagat
       61 aaaataatga caaatataag attaaatgaa catgataata tctttgaaat cggctcagga
      121 aaagggcatt ttacccttga attagtacag aggtgtaatt tcgtaactgc cattgaaata
      181 gaccataaat tatgcaaaac tacagaaaat aaacttgttg atcacgataa tttccaagtt
      241 ttaaacaagg atatattgca gtttaaattt cctaaaaacc aatcctataa aatatttggt
      301 aatatacctt ataacataag tacggatata atacgcaaaa ttgtttttga tagtatagct
      361 gatgagattt atttaatcgt ggaatacggg tttgctaaaa gattattaaa tacaaaacgc
      421 tcattggcat tatttttaat ggcagaagtt gatatttcta tattaagtat ggttccaaga
      481 gaatattttc atcctaaacc taaagtgaat agctcactta tcagattaaa tagaaaaaaa
      541 tcaagaatat cacacaaaga taaacagaag tataattatt tcgttatgaa atgggttaac
      601 aaagaataca agaaaatatt tacaaaaaat caatttaaca attccttaaa acatgcagga
      661 attgacgatt taaacaatat tagctttgaa caattcttat ctcttttcaa tagctataaa
      721 ttatttaata agtaagttaa gggatgcata aactgcatcc cttaacttgt ttttcgtgta
      781 cctatttttt gtgaatcgat tatgtctttt gcgcattcac ttcttttcta tataaatatg
      841 agcgaagcga ataagcgtcg gaaaagcagc aaaaagtttc ctttttgctg ttggagcatg
      901 ggggttcagg gggtgcagta tctgacgtca atgccgagcg aaagcgagcc gaagggtagc
      961 atttacgtta gataaccccc tgatatgctc cgacgcttta tatagaaaag aagattcaac
     1021 taggtaaaat cttaatatag gttgagatga taaggtttat aaggaatttg tttgttctaa
     1081 tttttcactc attttgttct aatttctttt aacaaatgtt cttttttttt tagaacagtt
     1141 atgatatagt tagaatagtt taaaataagg agtgagaaaa agatgaaaga aagatatgga
     1201 acagtctata aaggctctca gaggctcata gacgaagaaa gtggagaagt catagaggta
     1261 gacaagttat accgtaaaca aacgtctggt aacttcgtaa aggcatatat agtgcaatta
     1321 ataagtatgt tagatatgat tggcggaaaa aaacttaaaa tcgttaacta tatcctagat
     1381 aatgtccact taagtaacaa tacaatgata gctacaacaa gagaaatagc aaaagctaca
     1441 ggaacaagtc tacaaacagt aataacaaca cttaaaatct tagaagaagg aaatattata
     1501 aaaagaaaaa ctggagtatt aatgttaaac cctgaactac taatgagagg cgacgaccaa
     1561 aaacaaaaat acctcttact cgaatttggg aactttgagc aagaggcaaa tgaaaaacaa
     1621 gaaaatgcat tatctgatta ttattctttc aaggactagt ataacataaa atcgtctaca
     1681 aatagacaaa aaacctgcac gcttaatgta gatcaaaagc ttaacgcaaa tgaaatagat
     1741 tgacctccca ataacaccac gtagttattg ggaggtcaat ctatgaaatg cgattaagct
     1801 ttttctaatt cacataagcg tgcaggttta aagtacataa aaaatataat gaaaaaaagc
     1861 atcattatac taacgttata ccaacattat actctcatta tactaattgc ttattccaat
     1921 ttcctattgg ttggaaccaa caggcgttag tgtgttgttg agttggtact ttcatgggat
     1981 taatcccatg aaacccccaa ccaactcgcc aaagctttgg ctaacacaca cgccattcca
     2041 accaatagtt ttctcggcat aaagccatgc tctgacgctt aaatgcacta atgccttaaa
     2101 aaaacattaa agtctaacac actagactta tttacttcgt aattaagtcg ttaaaccgtg
     2161 tgctctacga ccaaaagtat aaaaccttta agaactttct tttttcttgt aaaaaaagaa
     2221 actagataaa tctctcatat cttttattca ataatcgcat cagattgcag tataaattta
     2281 acgatcactc atcatgttca tatttatcag agctcgtgct ataattatac taattttata
     2341 aggaggaaaa aatatgggca tttttagtat ttttgtaatc agcacagttc attatcaacc
     2401 aaacaaaaaa taagtggtta taatgaatcg ttaataagca aaattcatta taaccaaatt
     2461 aaagagggtt ata
//
