LOCUS       NZ_CP142377             2683 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Proteus mirabilis strain PM1164 plasmid pPM1164, complete sequence.
ACCESSION   NZ_CP142377
VERSION     NZ_CP142377.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38736073
            Assembly: GCF_035919645.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Yang,J. and Li,X.B.
  TITLE     A whole genome sequencing strain of Proteus Mirabilis PM1164
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Yang,J. and Li,X.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2023) Respiratory Medicine, Zhuhai Pepole's
            Hospital, Kangninglu, Zhuhai, Guangdong 510000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2023
            Assembly Method                   :: FALCON v. WGS-Assembler 8.2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 99.85x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/22/2024 22:38:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,721
            CDSs (total)                      :: 3,612
            Genes (coding)                    :: 3,561
            CDSs (with protein)               :: 3,561
            Genes (RNA)                       :: 109
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 18 of 51
            Pseudo Genes (incomplete)         :: 36 of 51
            Pseudo Genes (internal stop)      :: 10 of 51
            Pseudo Genes (multiple problems)  :: 11 of 51
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP142377.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PM1164"
                     /isolation_source="blood"
                     /host="patient"
                     /db_xref="taxon:584"
                     /plasmid="pPM1164"
                     /geo_loc_name="China: zhuhai, Guangdong"
                     /lat_lon="22.17 N 113.34 E"
                     /collection_date="2023-08"
                     /collected_by="Zhuhai People's Hospital"
     gene            complement(187..627)
                     /locus_tag="U1F93_RS18600"
                     /old_locus_tag="U1F93_18595"
     CDS             complement(187..627)
                     /locus_tag="U1F93_RS18600"
                     /old_locus_tag="U1F93_18595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            complement(1265..1909)
                     /locus_tag="U1F93_RS18605"
                     /old_locus_tag="U1F93_18600"
     CDS             complement(1265..1909)
                     /locus_tag="U1F93_RS18605"
                     /old_locus_tag="U1F93_18600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             complement(1269..1909)
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(2004..2159)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 cgggtaaagt aataggtaga ataacaggtg gattaatggg taagaaataa cacaacgtca
       61 tcttgtgtct atctattatt ctgtatctta ttctatgtat tattctacct attacagacg
      121 aaatagataa aataagagat agaataatag ataggataat acataaaata ataggtaaac
      181 ctaacgtcag cgcacctttt cttcgagctg ttttagcatc gaaatatcac ctaataaccg
      241 ttgattttta cctgtgaaaa agatgatcgg actgacattt gcattatcaa tacttcggct
      301 taactgaatt cccatcgcct gataatcatc atcgtttgtg caatggtata acgctaaaac
      361 aagctgacat tgttctggag ttccgcattc tattgcccag cggatcaact ccgaaaaggt
      421 caatccgttc ggtttccagt gttttttatg ccgtgacgct aacgccttaa atttttcacg
      481 cccttgatta tatttttctg ccccgatcac cggatcttca caacgaaccc cttgaaccgg
      541 tcgcttatca aatgacaatt cccataaatt taattcttcg atgtattcgt aatcttctgg
      601 cgatgccaaa cgaaataatt gagacataga gacaccctcc gatcatgtgt gaacggagac
      661 agtataaggc tttcgagaaa ttccgcttcc tcgacgtgaa acaagttcac gccttgcggc
      721 gagcgttgcg aattgaattt atgaggttta ccaagctcca gatgtaacaa agccccgtga
      781 cagcatcaca gggctctggt actctaaatc ttgtgcattc gttgctcaga ttagacgtcg
      841 caatccaatc ttagcaacgt gagaggcgct tgtcacgttc tcattaaata ccagccaacg
      901 acattaaccc aaatgcacca cttgattgac tcggacttag cccggtctcc gaaaggataa
      961 acaggcaaat tgtggtagta aaacgtaccg gaaaacgaaa ttccggctct acctccgaat
     1021 cacgctgcgg tatcgaaaga ttacagtgcg tacctgataa gagcaccaat caacggacta
     1081 gggatttctt ggattgcgaa gtgtcgaaag aagcccaacc taaccaaact tagccagatt
     1141 aacgagctaa gagaccatga cccaataact gatcatggag aaaagcaaag acaagatgaa
     1201 gatgtcgctt cgctccgttt tgattagtac cacattgggg cattaggcgt tttttaccta
     1261 gattttatcg gtgaacaata acacctaaac tctcaacaag ctgaagcgcc tgctctccat
     1321 ccaacttcac tccatctaaa ttaattcgcc ttgcatcaag ctcgccaagc gccccacccg
     1381 ttaaatcaca accagtaaaa tcagccaaag accaatcaaa cgatgaaaac tccccacaag
     1441 aaagatcgga gccacgaaac acggcgccag ttatcacagt gccattccag cgattttccc
     1501 acagttcgca cttttctaat atgactctag aaaaattagc gtaactaaga tttgtcttgg
     1561 ttatataagc actacaaaac catgaccttg tagttatcat attcataaaa ttagcccctc
     1621 gaaaatcagc tccttgagct aaacactcac taatttcaag acctaaggcg ctaatgtttt
     1681 taaaattact cattgataaa tcgcagcttt taaagctagc gttttttagt ttggctctat
     1741 taaaatcaca cccttccaag ctattcctgt cgtaaaaact acaatcaaca aattcagtat
     1801 cagttaaatc aacccctgaa aaatcacaat ttgaaaaggc aatattttta actctattcc
     1861 ccgtaaattg atctcgtgaa aacttttcat tgataaagtg cttttccata catgctacac
     1921 ctggttattt atacagtgca atcattgtac attaatttga acaaccttaa actctagcta
     1981 aaattgattc atacaatccc ttttatgtta aacgggcgag ttagttagca aaaacctccc
     2041 gttcatcccc attaaagccc ctcgaaacga ttttaagaca cgatcaccct ataaaacacc
     2101 caaatctacg ctgaaagttt agaacggttt tgcgggcttc tgagtgcgtt tttaacatcg
     2161 tgcaaactga caagtaaaac gatgcgaaat cgctgaaagt cacaaacttg ttttgtggca
     2221 agaagcgatt tgaccaaccg agtaaaacga gggcggtagg ctttttgttt ttatcctgat
     2281 gagcgtccag cgaagaaagg gaaaaacagg gggagccgaa acgaaatgac acgccccagc
     2341 gatggcaagt gaaccccagt gaacgtgttt cgttttgggg gcaaagcccc ccgtcaagcg
     2401 aagcgtctga ccaccacatt tttgagcgac caaatacagg ggcgaaaaaa gggggtggtc
     2461 agacgaacgc agtgagtttg acgggcttgg gtgaatggtt tttttcgcag gcgtccagcc
     2521 gaagaaaata gccagagggc ggagccttat gtcattcatt ttcgtccaga aaatgagtgg
     2581 cattgatact gaaagtatca tggggtgcaa gttagtaaaa ctatgattct acccattatt
     2641 tcacccgtta ttctgcccgt tatacctaaa ttgggtgcaa taa
//
