LOCUS       NZ_CP142024             2495 bp    DNA     circular CON 17-JAN-2024
DEFINITION  Klebsiella pneumoniae strain KPN945 plasmid pKPN945C, complete
            sequence.
ACCESSION   NZ_CP142024
VERSION     NZ_CP142024.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39299876
            Assembly: GCF_035666235.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Xiao,X.
  TITLE     Klebsiella pneumoniae KPN945, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Xiao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2024) Department of Laboratory Medicine, Southwest
            Medical University, Taiping, Luzhou, Sichuan 646000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/17/2024 08:17:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,415
            CDSs (total)                      :: 5,291
            Genes (coding)                    :: 5,130
            CDSs (with protein)               :: 5,130
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 66 of 161
            Pseudo Genes (incomplete)         :: 98 of 161
            Pseudo Genes (internal stop)      :: 30 of 161
            Pseudo Genes (multiple problems)  :: 26 of 161
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP142024.1.
            Bacteria and source DNA available from homo sapiens.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KPN945"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pKPN945C"
                     /geo_loc_name="China:Luzhou"
                     /collection_date="2019"
     gene            complement(join(2475..2495,1..207))
                     /locus_tag="VPB88_RS27065"
                     /old_locus_tag="VPB88_27065"
     CDS             complement(join(2475..2495,1..207))
                     /locus_tag="VPB88_RS27065"
                     /old_locus_tag="VPB88_27065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1415..1633
                     /locus_tag="VPB88_RS27070"
                     /old_locus_tag="VPB88_27070"
     CDS             1415..1633
                     /locus_tag="VPB88_RS27070"
                     /old_locus_tag="VPB88_27070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(1924..2109)
                     /locus_tag="VPB88_RS27075"
                     /old_locus_tag="VPB88_27075"
     CDS             complement(1924..2109)
                     /locus_tag="VPB88_RS27075"
                     /old_locus_tag="VPB88_27075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          1790..1877
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(623..1151)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 ttctttaacg tcggttttat tgatctgctg tttgacacca ttcgcgtctg tatagccaag
       61 caggcctgag tctgattctt taggtttgcc gtcgctgaca atagtgcgac cgtcattggt
      121 gtgtatggca tagcttgtgc gcgtgcagcc ggtgagggct gaaagcgcaa ctgccgctgc
      181 gaacactgaa acaaaaatct ttttcaaagc cagctccttt tatccatatc agttttggtc
      241 actaaccatc taactatagg tcatttttta tgtgaaaaga ggcttgatgg tgggctgtat
      301 atcgagttag gcgcgaggtg ctatggtcaa agtgtggtgt caggcgggga ggaggcttat
      361 atgagatgta atccggccga tacatatacc aagatgattt aagtattcct ctttgtgagg
      421 ttggatgtct aatttataaa ggatcttctt gagatccttt ttttccgcgc gtaatctctt
      481 gccctgtaaa cgaaaaaacc accctggcag gtggtttttc gaaggttagg taatcctggc
      541 agatccccta accgtggtaa cagtcttgtg cgagacatgt caccaaattt gtcctttcag
      601 tgtagcctca ctaaggccgc cacttcaaga actcttgaga catctctcgc acatcctgtt
      661 tgccaatggc cgttgccaat ggcgattagt cgtgtctttc cgggttggac tcaagttgat
      721 agttaccgga taaggcgcag cggtcggact gaacgggggg ttcgtgcata cagtccatcc
      781 tggagcgaac tgccttcccg gaactgagtg tcaggcgtgg aatgagaaac cgcggccata
      841 acagcggagt gacaccggta aaccgaaagg caggaatgcg ggggagcacg agggagccac
      901 cagggggaaa cgcctggtat ctttaagccg catcgggttt cgccaccact gatttgagcg
      961 tcagattctg tgatgcttgt caggggggcg gagcctatgg aaaaacggct ttggcgcggc
     1021 cttatgcttt cttcgttaag tatcttcctg gcatccccca ggaaatttct gatccatccg
     1081 taagcccgtc ccgctcgccg cagccgaacg accgagcgga gcgagtcagt gagcgaggaa
     1141 gcggaatata ttctgtatca cattttctcc tgacgcgttt tctttcactt tctgcgcctg
     1201 tcttatgtgg cattaatgct atgtgttact gccatgctac atcttaagcc agtatacact
     1261 ccgctagtgc tccgtgactg gtccggcgct gcgcccggaa cccgcctgta ccggttcagc
     1321 agccgttccg gcctgactgc aatttttttt ttttcatccc tgcccgctac cctgtaaacc
     1381 tttcttctgc gttgccgtta acagtaggta agccatgttt ggtttttctt ccggagccct
     1441 gatgactctt agtgatgatg agcgacacct gcttgtgtcc gttgtttcgg tctggctacg
     1501 gcgtgccgga ggggatgccg gagccatgat gctggatgca taccggcaga ttttgtctga
     1561 aaccgaaccg gccgtaagga ctgtcatgct cgaatttctt gaatccgttc gcattcatta
     1621 catttcgtcc tgagcatttt ctgtatttct gtccatactt aaacgaggcg gccgtcacgg
     1681 acggtggtcg tcgttccatg atgctgttat ggacgagtga gagtaatcta atctaacttg
     1741 attgagttcc gggcgtgccg cccggttttt tttgctgttt cccggtgtcc gttccgggac
     1801 aggatgtgca tttgtaatac cgcgcacgcg ccggcatcac aaataccctg gtcagggctg
     1861 cgccccgaca ccccgccatc gcctcacggc cgcgcactga attgcgcacc cgttcaccga
     1921 ttttcacgca ttttcctcgc ctatctgtgc gttcagcatg gcgtaaagcg cttcggcctg
     1981 atcgtgcagg tgctcacagc agccggcagc ctcatccaga tccatctgct cgagccgctc
     2041 aaggaggaga agtgtctgtg cgcggataaa tttggccata ttgagggcgg cggattcctg
     2101 tctggtcact ggtgattttc cccgtctggt gatgattttt gcgtgaaaag agcatggcgt
     2161 cattctggtg catagtcatg catgccgtta aaatttaaca ggcgcgtttc tgacgggttc
     2221 cggggtggtt tgttgtggtt tttgtcatgg tttcgtcagg aacgcgctga acgcgtctca
     2281 ggcggtgcgg gcaacggatg ttatggtaaa ttcttggggg cttgattata aaataccgca
     2341 cttcctctta tgtcttgtgc tttttagaca accctgaaag cttttagctt tggtgatgca
     2401 atttgctggg attttggcgg agaaccacag gtaaagaaaa aggccacatt agcggccttt
     2461 ttcggagaag atgctcagtg cggaatttcg gagac
//
