LOCUS       NZ_CP140509             2101 bp    DNA     circular CON 06-JAN-2024
DEFINITION  Escherichia coli strain 2023CK-01341 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP140509
VERSION     NZ_CP140509.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38251294
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
REFERENCE   3  (bases 1 to 2101)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (15-NOV-2023) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. 0.5.0
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 20.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/06/2024 05:03:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP140509.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="2023CK-01341"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="unnamed5"
                     /geo_loc_name="USA"
                     /collection_date="2023-10-18"
     gene            join(1988..2101,1..153)
                     /locus_tag="U4W76_RS00005"
                     /old_locus_tag="U4W76_24555"
     CDS             join(1988..2101,1..153)
                     /locus_tag="U4W76_RS00005"
                     /old_locus_tag="U4W76_24555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            1019..1984
                     /locus_tag="U4W76_RS00010"
                     /old_locus_tag="U4W76_24560"
     CDS             1019..1984
                     /locus_tag="U4W76_RS00010"
                     /old_locus_tag="U4W76_24560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          1413..1644
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 ttaagttttg gcacatttgg ttttcatccg cacgaaggtt ttgaggatga attaatttta
       61 tatattcaga aaacaaacga gagggtaaaa actctttttg tgaaaataga tttaaacggt
      121 atcaagtttg gatttttaag aacgcattct tagttctgga aaagagccag cggcaggctg
      181 aggtgatagg tacgagattg catgcaatct ctagtgctct gtctatcctg cattatcctc
      241 agcattatcc tcagcattat cctcagcctt gccaactcga caccaatgca ggatagacaa
      301 tccgatgtca aatgttaaca ctctgcgagt ggtacatttt ccccggatta tcgtcctgag
      361 cctgccgctg gctctctttc taccgcctcg ctttgctcgt tgctcaacgc ctcacagaca
      421 cggattaaaa tccgcatccg ttcaccgttt tttaaagtcc gttaaaagca tgatgccatc
      481 tccgagagtt aatctcgtca aatgctaaat cgtgggggtc ccctttgggg ttccgattta
      541 gtgattgacg acaccaccga ttaaaaaact tatgcggggt ggatggtttc acgaagtgag
      601 gccatccacc tgtaagacag ggttttgttt ttattccctg ttttggtgat cgggtgtgtg
      661 gaaaaggttg gggtaagccg ttcgggggtg cttgttttgg ggggttaaaa ttgtggttat
      721 tttttgcgca attctcgcgc gtgatccttg tatttatact taagggataa atggcggata
      781 tgaaatagtg gtttagccca gtaatgacga ggctttgagt gggttttgac aggtcaaaga
      841 aaatggagca gaattgaggc gtttttaatc ggcgttgggg agtgcgtcaa cactccccaa
      901 catttcgaat gtgtcacctc agcggcaaac tctggtgaca tgtactggct cgcaatgcac
      961 aggtacgtga tgaatatacc acatcaaatc acagcctgcc cagatcggag caggcttaat
     1021 gtcagaagat aaattccttt cggactacag cccccgtgat gcagtttggg atacccagcg
     1081 cacgcttacc gattctgtcg ggggtatcta ccagactgct gctgaattcg agcgctatgc
     1141 actccgtatg gcctcctgta gcggtttgtt acgttttggt tggtctacca tcatggaaac
     1201 cggagaaacg cgcctacggc ttcgtagtgc gcaattttgc cgtgtccgtc attgccctgt
     1261 ctgccagtgg agaagaaccc tcatgtggca agcccgtttt tatcaggctc taccgaaaat
     1321 cgttgtggat tacccgtctt cccgatggtt gtttctgacg ttaactgtca ggaactgcga
     1381 gataggtgaa cttggaacag tccttacagc aatgaatgcg gcgtttaagc gaatggaaaa
     1441 gcgaaaggag ctatcacctg ttcaggggtg gatcagggct acggaggtga cgcgaggtaa
     1501 ggatggcagc gcacatccgc attttcactg tctgctgatg gtgcaacctt cttggtttaa
     1561 agggaagaac tacgttaagc acgaacgttg ggtagaactc tggcgcgatt gcttgcgggt
     1621 gaactatgag ccgaatatcg atattcgggc agtaaaaact aagacaggtg aggttgtggc
     1681 caacgttgcc gagcaactgc aaagcgcggt tgctgaaacg ctgaaatact ccgttaaacc
     1741 ggaagatatg gcaaacgatc ctgagtggtt tcttgagctg acgcggcagc ttcacaagcg
     1801 ccgttttatc tcgaccggtg gggcgctaaa aaacgtcctc cagttggatc gagaaaccaa
     1861 tgaggatctt gtcattgccg acgatgtagg ggatggcact gatgacggga agcggacggc
     1921 gtttgtctgg gattcaggta aacggcgtta caaacgcgcc cctgagaagg ataaatcgga
     1981 ttaacgtatg aatattaata ttgaatacct gaatggaaat aagactattg gtttattttt
     2041 tttaagaagt gaagcggtga ttcctgacag gtttaaaaac cttattttgc ttattgatgg
     2101 a
//
