LOCUS       NZ_CP140480             2050 bp    DNA     circular CON 09-JAN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain FF29-001BS plasmid
            ColpVC, complete sequence.
ACCESSION   NZ_CP140480
VERSION     NZ_CP140480.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38451788
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Manyahi,J.
  TITLE     bla NDM5 Klebsiella pneumoniae Tanzania
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Manyahi,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2023) Clinical Science, University of Bergen,
            Haukelands veien 208, Bergen 5020, Norway
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. May-2022
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 12.0x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 10:21:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2
            CDSs (total)                      :: 2
            Genes (coding)                    :: 1
            CDSs (with protein)               :: 1
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 1 of 1
            Pseudo Genes (incomplete)         :: 0 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP140480.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="FF29-001BS"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="ColpVC"
                     /geo_loc_name="Tanzania: Dar es Salaam"
                     /lat_lon="6.8165 S 39.2894 E"
                     /collection_date="2022-03-03"
                     /collected_by="Joel Manyahi"
                     /genotype="ST437"
     gene            complement(join(1595..2050,1..526))
                     /locus_tag="SNM26_RS00005"
                     /old_locus_tag="SNM26_28800"
                     /pseudo=""
     CDS             complement(join(1595..2050,1..526))
                     /locus_tag="SNM26_RS00005"
                     /old_locus_tag="SNM26_28800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /name="protein rep"
     gene            complement(850..1041)
                     /locus_tag="SNM26_RS00010"
                     /old_locus_tag="SNM26_28805"
     CDS             complement(850..1041)
                     /locus_tag="SNM26_RS00010"
                     /old_locus_tag="SNM26_28805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          1678..1869
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 tatcgagggt gtggaagtgc gggtgtgcgc tgccgtcact gccgcgggtg acttccgtgg
       61 tgcgtatcca gccctgaact ggtcggaact ctttacggtc cttcagtcgc tggaaagccg
      121 tgttcatccg gctcagcgtc tcgcccagct cctcgatcgc gcagttgcgc acggtcaggg
      181 tcagaaacat ccagcgggaa tcggggtaat ccgccacgat acgcggcagg gactggtaga
      241 aacgggcttg ccacatcagg gagcgcctcc actggcagac aggacagtgc cggacacggc
      301 agaaatgcgc ctcacgcagc ctcaggcgcg tttctccggt ttctttgagg gtagaccacc
      361 caaacctcag taaaccgcca caggaggcca tacgcgcccc gtagcgctca tattcagccg
      421 caagcaggta aatccctccc acgtcgtcag aaacgcttct gtgagcgtcc cacggcgcat
      481 ctgaggggga gtagtcagtt aggttctgga gttcaggatt ttgcatgcac accgccccat
      541 gctgggcgat ggctcatttg acgtgttatc attgccatat cacctgtgtt gtcgtgtcca
      601 aattcgaatt cctacaggtg gtcacacccc cgaactgtta gcgcagttgc gggggtcgct
      661 tttttctgcg accactcccg acagaatact tccaaaacca ttttcaggca aatcacactc
      721 aaacccttgc ggcacaaggg ctggcggcgt tttttgacgc cagagttatc ccttaagtat
      781 aaatacaagg atcgcgcgca cgagactccg gccattttct gaccgatttc cctcgcgcgc
      841 acgcgaggct cacaattcag ggtccgattc tgacatcaaa tcatgagcca acctggtcag
      901 tttccgttga cggatatgcc ggggatcatt ttctttttcg gccttccgct gcgcataggc
      961 cgccatgaac atttcccgat ccacatgcgc acccatctca tcgagaatct caaacagccg
     1021 gttatccagt ctgacgatca tgcctacccc ctcaaaaaac gcttatcagg tggttgcgct
     1081 cactgcgtga tcacaaccac cccctgtaag tattttacgg gtgctgtcgt caatcactaa
     1141 atcggaaccc actggcaagc cagcgggacc ccgcgattta gcgtttgacg atttcgggaa
     1201 cggcgaacgc tgacagattt taatctggcg gcgtgaggtg ttggcagggt gtcggggcgc
     1261 agccctgacg gatcgttttt ggtaccggca tcgtgatggc ggtactccaa aaacacatct
     1321 tgtccgttat cagtttttgt ttttcgtggg cttgccccac cgcgcgtttc tcatcgccag
     1381 atgagaaact actaagcgcg ccttccggaa aattaccgga agaaaaaccc aggttcggaa
     1441 tccgaactca gtaatcgagt gacgtcactt tgcggcgtta gccctatcct gcatcggagt
     1501 aaaatcaatc ggacaagatg tgactttggt acaccgccac caaggtgacg gatgcccaaa
     1561 gccctcatgg tcagggcgca gccccgacac cctgttagtc tgattcggtt ttatctttcg
     1621 tcggcgaacg ccggtacttt ttgacctcgg tcttccactc gaacgcgatg cgggaaccgt
     1681 catcatcgcc ctcggaaata tcatccccga tcaccatgtc ggcgtcggtt tcctgatcga
     1741 gtttcagcac gtctttgagt gcgccgccgg tcgccacaaa gcggcgcttg tgcgtctggc
     1801 gggtcagttc gaggaaccat ttaggatcgg ccaccatgtc ggccggcttc gtggaatatt
     1861 tcagggtttc ggccactgcg ccgcgcacca gttcggcggt cgcgcaggcc agcgattcgc
     1921 cgtccttcgg cttgcggggt ttcactgccc ggacatcgac attcggatcg taactgaccc
     1981 gcaggcactc acgccacagc tcaacccagc gttcatgcct gacgtaactc ttcccgttaa
     2041 gcatgcccgg
//
