LOCUS       NZ_CP140419             4633 bp    DNA     circular CON 23-DEC-2023
DEFINITION  Salmonella enterica strain PNUSAS040124 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP140419
VERSION     NZ_CP140419.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09091327
            Assembly: GCF_006287295.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4633)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
REFERENCE   3  (bases 1 to 4633)
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2018) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/23/2023 12:34:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,763
            CDSs (total)                      :: 4,638
            Genes (coding)                    :: 4,516
            CDSs (with protein)               :: 4,516
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 47 of 122
            Pseudo Genes (incomplete)         :: 92 of 122
            Pseudo Genes (internal stop)      :: 20 of 122
            Pseudo Genes (multiple problems)  :: 34 of 122
            Pseudo Genes (short protein)      :: 1 of 122
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP140419.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS040124"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            569..1129
                     /locus_tag="U2S60_RS23790"
                     /old_locus_tag="U2S60_023790"
     CDS             569..1129
                     /locus_tag="U2S60_RS23790"
                     /old_locus_tag="U2S60_023790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            1136..1369
                     /locus_tag="U2S60_RS23795"
                     /old_locus_tag="U2S60_023795"
     CDS             1136..1369
                     /locus_tag="U2S60_RS23795"
                     /old_locus_tag="U2S60_023795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2097..2936)
                     /locus_tag="U2S60_RS23800"
                     /old_locus_tag="U2S60_023800"
     CDS             complement(2097..2936)
                     /locus_tag="U2S60_RS23800"
                     /old_locus_tag="U2S60_023800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(3128..3277)
                     /locus_tag="U2S60_RS23805"
                     /old_locus_tag="U2S60_023805"
     CDS             complement(3128..3277)
                     /locus_tag="U2S60_RS23805"
                     /old_locus_tag="U2S60_023805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     gene            complement(3947..4138)
                     /locus_tag="U2S60_RS23810"
                     /old_locus_tag="U2S60_023810"
     CDS             complement(3947..4138)
                     /locus_tag="U2S60_RS23810"
                     /old_locus_tag="U2S60_023810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4201..4524
                     /locus_tag="U2S60_RS23815"
                     /old_locus_tag="U2S60_023815"
     CDS             4201..4524
                     /locus_tag="U2S60_RS23815"
                     /old_locus_tag="U2S60_023815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          3775..3859
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(3206..3764)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.761"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2..1467
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.796"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          4169..4521
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="83.051"
                     /coverage="100.0"
                     /evalue="1e-57"
ORIGIN
        1 cgggaactca ttgatgccac gccattttcg aagaaataca cgtcaggcgt tctgtcgttc
       61 gcggagaagg agttaccgcc gggtgaacgc gaaagagtga tgacgagctt tgagcgtgtt
      121 cttatgcccg gtctcgaaaa agaccagtac agcattctct gggtggaaca ccaggataag
      181 gggcggctcg aactgaattt tgtcattccg aacatggaac tacagagcgg taagcgcctc
      241 cagccgtact acgaccgtgc ggacaggccg aggataaatg cctggcagac gctggttaat
      301 catcattacg ggctgcgtga cccgaacgca ccggagaaca gacggacgct tgtcacaccg
      361 aataatctgc caaaagcgaa acaggaggcc gcagaagcga ttacacgggg tcttgaggcg
      421 ctttaccgtg ccggagcaat aaaaacgcgt caggatgtca ctgaggcgct cacagcggca
      481 ggttttgagg tggtgaggac aaccagaagc agtatcagta ttgccgaccc ggaggggggg
      541 cggaatctca ggctaaaggg ggcgctgtat gagcaatctt ttacaaatgg gaacagactt
      601 cgagaagaaa ctgaaagagc gagccgcttc taccgagaac atgctgaaca gcgagttcag
      661 gaagctagaa gagtctgtag acaaggcact gagcttaaac aggcagaaaa tcagagacgc
      721 tatcagcgaa catacaacat ccgtgaaaca gcaactggat acgctgagca ccaccgtgag
      781 cacgcagctc agcaccacag aggccgaact gtcccggcag cagaaaaacc tgctctggca
      841 ggtgatcaaa gggcgggtac tgtttccggc gctgaccgcg ctcagcgtca cgggcggcat
      901 tttcctgggg tgctgggggc tgattcagtg gcaggaaagc aggattgcga aaaatatctt
      961 gaccatcaga gagcaggaaa acacgctggc gaaactcgag gcaaaaacct ggggggtgac
     1021 gttcgtcaat ggcgagaacg ggaaatttct ggtgctgccg gacggggtga aaggggaaaa
     1081 cacctggacg gtgggcgaca agaacgccgt gaggctggtc agggagtaaa cgagtatgac
     1141 ggaactggaa gggcatttgc tgaacgcctt agagcatttg caacaggact atatgcggcg
     1201 gctgaacgag tgggagagcg ccttcgcaga attgcagaag atgcacgcgg ttacgcaaca
     1261 gaacaacgcg atactgaacg agcgtgtcgt gaacttgagt cagcaggtgc agctattagc
     1321 cggacaagtc gaccgcttga gtcggttatt tatcacgaac aacagataag ggatgaacag
     1381 gagcgtcagg cgcaggagct tgcccggcgc tggcatgaag agcaggaacc cgaagcgcgg
     1441 atctggcgtg gcccgtcaat ggggatgtga ccggggtgcc ccctgaaatc gagccagttt
     1501 gtggcacgcc ctacccggat ggcgccaatg ttaatgtacg tacattagca ttaacaatat
     1561 ccaaacctcc ccattttgcc ccgttcgacg gctggaacgt gcgaaactga tcgtcattca
     1621 gtttcgcgca taactatgca tgaggttaaa atttaccagg cgcgatcgcg gcagtttttc
     1681 gggtggtttg ttgctgtttt tacctgtctg ctgccgtgat cgcgctgaac gcgtttaagc
     1741 ggtacgcgca atgcgacgtt atggtaaata cggagtattt taattgcggg aattaaaaca
     1801 acaaaggccc gctgtactct atacagcggg cctttgttgt atatctctgt cgtttgtccc
     1861 cggggggaag cattactgct aacaagtccc gtgagaaaac tgcgcaatcg tattgcgcac
     1921 catgaaccta ttctcaaccg caatctggag gatgattttg ctacgataaa gagaattatc
     1981 gcgtatcggt gtcagcattc attggagtgg atgctgaaaa accaggtgtt actccctcta
     2041 cttacactta aacctctcta aaaatataag taagtactat cgagggctat catgaactat
     2101 ggtgccctct gagcatagct acccattact tcttctatgt cattgaataa ttcatttctt
     2161 aactctaagt attctagtaa ctccatttct aatgactctg tcgtgaactt aaatctagaa
     2221 ggatctttga ttgagtttac tagtcttgat aacgctctat atgttttgag tgaaggttgc
     2281 attatagatg gaaagtattt gaaaacctct tcatctctgt tgaaattaac taaaaacttg
     2341 tagtcatcat ttataaatct caagcataca gcgtcaagct tatcgccttt tcttattatt
     2401 atttctttat aggaaagata tttttcagaa gataagtccc acatcaagcg aaaatctctc
     2461 tttgcgaacg agttcgcgtc atcattgaaa agagatgatg tgatggcttt ggatagacct
     2521 tctgtgttta tctctttgtt ggatgggtag taaattttat taattgcttt cattctctca
     2581 aatgatgaat ataggtcatt atgccacctt gttgaaatca cccctttagt tatattctcc
     2641 ttgctaaaat taagccctgt atcaaaaata aatgcagcca tcagtgaata tgatatgttt
     2701 tttattaact cagacttaaa tggttccgct atggagtagt acagtgataa aataactaaa
     2761 aataaaaggt attgtcttac ctttcccgat gagtatatgt aaaggcgata tttatttatt
     2821 gatagtttta ttttgtatgg aatgatctca tttctgtcat atcctcttcg tggtggagca
     2881 aaacaaaaga aacatgcagc tattaataaa acaaaaaaga tgaacagtgt aagcaagttc
     2941 ggctcctgtg tatgctcact atgcatgatt gtcttgagat ctaacgatcc tgaaggtagt
     3001 cttgtccgta aacgaaaaaa ccgcccagca aggcggcttt tcgaaggttc tcagagcagc
     3061 aactctttga accaaggtaa ctggcttgga ggagcacagc caccaaatct gtcctttcag
     3121 tttagcctta accggcgcat aacttcaaga ctaactcctc taaacggtta ccaatggctg
     3181 ctgccagtgg cgtttttacg tgtctttccg ggttggactc aagacgatag ttaccggata
     3241 aggcgcagcg gtcgggctga acggggggtt cgtgcacaca gcccagcttg gagcgaacga
     3301 cctacaccgg gccgagatac caacagcgtg agctatgaga aagcgccacg cttcccgaag
     3361 ggagaaaggc ggacaggtat ccggtaagcg gcagggtcgg aacaggagag cgcacgaggg
     3421 agcttccagg gggaaacgcc tggtatcttt atagtcctgt cgggtttcgc cacctctgac
     3481 ttgagcgtct gtttttgtga tgctcgtcag gggggcggag cctatggaaa aacgccagcg
     3541 gcgcggcctt cttcctgttc ttggcctttt gctcacatgt ttcttttggc gttatcccct
     3601 gattctgtgg ataaccgcat caccgtcttt gagtgagctg ataccgctcg ccgcagccga
     3661 acgaccgagc gtagcgagtc agtgagcgag gaagcggaag agcgcctgat gcggcatttt
     3721 ctccttacgc atctgtgcgg tatttcacac cgcatatggt gcacttttct tataatccgc
     3781 actgatgcca catagttaag ccagtataca ctccgctatc gctacgtgac tgggtcaggg
     3841 ctgcgccccg acacccgcta aaacccgctg acgcgccctg acgggcttgt ctgctcccgg
     3901 catccgctca caggcaagct gtgaacgtct ccgggagctg catgtttcag ttgctttcac
     3961 cgtcatcgcc gaagcgtgcg aggcaactac ggtagagttc gtcggcgtgg tcgtgaagtg
     4021 attcgcagat gtctgcctgt tcgtccgcgt ccagctcgtt gagtttttcc agcagggtca
     4081 gcgtctggct tctgataaag cgggccatgt taagggctgt tttttcctgt ttggtcatgg
     4141 tcttaaggct ccttaatagg ggatttttta gggggaatga taccgatgaa acgcgagaag
     4201 atgctcacga tacgggttag cgatgaggag cacgcccggt tactggaacg ctgcgagggt
     4261 aaacgactgg cagaatggat gcggcgggtc tgtctggggg agccggttgc gcgcacagga
     4321 aaactgccga cactatcgcc gccattgctg cggcatctgg ctgccatcgg gaacaatctg
     4381 aaccagacag cccggaaggt gaacagcggc cactggtctt cgattgaccg ggttcatgtg
     4441 gtggccgcac tgatggccat cgagggtgaa ttgcgccagt tgcggcaggc tgtcagggaa
     4501 caggggggac gggatgatag ttaaatttca tgccaggggg aaaggcggtg gaagtggccc
     4561 ggtcgattac ctgctggggc gggagcgtaa ccgcgaaggc gcaacggtgc tccggggtaa
     4621 cccggaagaa atc
//
