LOCUS       NZ_CP140408             4192 bp    DNA     circular CON 23-DEC-2023
DEFINITION  Salmonella enterica strain PNUSAS210186 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP140408
VERSION     NZ_CP140408.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20057411
            Assembly: GCF_019105565.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
REFERENCE   3  (bases 1 to 4192)
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2021) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/23/2023 12:08:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,682
            CDSs (total)                      :: 4,557
            Genes (coding)                    :: 4,445
            CDSs (with protein)               :: 4,445
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 46 of 112
            Pseudo Genes (incomplete)         :: 83 of 112
            Pseudo Genes (internal stop)      :: 20 of 112
            Pseudo Genes (multiple problems)  :: 34 of 112
            Pseudo Genes (short protein)      :: 1 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP140408.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS210186"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            join(3923..4192,1..720)
                     /locus_tag="U2S70_RS00005"
                     /old_locus_tag="U2S70_00005"
     CDS             join(3923..4192,1..720)
                     /locus_tag="U2S70_RS00005"
                     /old_locus_tag="U2S70_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     gene            1827..2816
                     /locus_tag="U2S70_RS00010"
                     /old_locus_tag="U2S70_00010"
     CDS             1827..2816
                     /locus_tag="U2S70_RS00010"
                     /old_locus_tag="U2S70_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          723..804
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          2819..2900
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(447..638)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
     Typing          complement(2543..2734)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 atgtggcaag cccgtttcta ccagtccctg ccgcgtatcg tggcggatta tcccgatgcc
       61 cgctggatgt tcctgactct gaccgtgcgc aactgtgcga tcggggagct gggcgagatg
      121 ctgaaccgga tgaatgcagc ttttcagcgc atgaaggttc gcaaggagtt ccggcctgtg
      181 cagggctgga tacgtaccac ggaagtcacc cgcgggagcg acggcagcgc acacccgcac
      241 ttccacaccc tgatgatggt gccgcctggc atgctaaatg ggaaaagtta cgtcaggcat
      301 gaacgctggg ttgaactctg gcgggagtgt ctgcgggtcg attatgaccc gaatgttgat
      361 gtccgggcag tgaaacctcg taagccgaag ggcggcgaat cgctggcctg cgcgaccgcc
      421 gaactggtgc gcggtgcggt ggccgaaacc ctgaaatatt ccacgaagcc ggctgacatg
      481 gtggccgatc ctgaatggtt cctcgaactg acccgccaga cgcacaagcg ccgctttgtg
      541 gcgaccggcg gcgcactcaa agacgtgctg aaactcgatc aggaaactga cgccgacatg
      601 gtgatcggtg atgatatttc cgagggcgac gatgacggtt cacgaatcgc gttcgagtgg
      661 aaaaccgagg tcagaaagta ccgtcgctca ccgacgaaag ataaaactga atcaggctag
      721 cggggtgtcg gggtgcaccc ctgaccagat ggcaattgtg atagcgtcgc gtgtgacggt
      781 attacaatta cacatcctgt cccgaaaatt cccgccgttt ctcggttttt tgagcgtcgc
      841 agaccgcacg acaaacgaac ctaaggtgag tttgtataag tgcgcacttc gtgagattcc
      901 ctgactgcca gtttgtcgat tgcgcggaac ggctgcggca cgaaaacggc aaaatgattt
      961 actcgccgtt tgtgtgggtt gttttgtggg gtgtcaatgg ggttgtggtc ttttttgtgg
     1021 gttaaagtgt gggtgattgt gtgggctgtg tgttttgagt tgtgggtgat tatgtgggtc
     1081 attgtgtggg ctgtatgcac ggcatttttt tgttctccta aaacacaggc acgataagcg
     1141 gcgtacacaa aacggggcgt ttcgctccgt cgcttgtgcc aaaggggaca cccctttgca
     1201 accctgtgcg gttctacgaa cctggtcagg actgcgcccc gacaccccgc caacgcctca
     1261 cggaacgcga aaaaattccg cgtaccgttc accgttccct gattcgtcaa acagaaaatc
     1321 gcgggggccc gcgcctccgg cgtgggttcc gattttgtga ttgacgacgg cacgggaaaa
     1381 acactgggga tggtggttgg tgtcacgcag tgaggccaac cacctgcaag acggtttttt
     1441 ttgttgttca caaaatcggg gtgaaagtct gtggatgaga tgggtgtaag tgggtggggt
     1501 tgggtgtttt gggttactga aaatcccgct caaaattcaa gcgaatctcg cgcgcgatcc
     1561 ttgtatttat acttaaggga taactctagg attcaaattc gcctccagcc cttgtgccgc
     1621 aaggcctgaa gggggatttg tcggaaaatg gttttggagt tattctgtcg ggagtggtcg
     1681 cattaaaagc gacccccgca acgagggcaa tcgttcgggg gtgtgaccac ctgtaggaat
     1741 tcgaattggt gatacgacta acacaacagg tgatatggca atgataacac gtcagatgag
     1801 ccatcgccca ctatcgggtg gtgcgcatga aaaaccctga tctccagaac ctcacggact
     1861 attccccctc agatgcgccc tgggacgctc acagaagcgt ttctgatgac gtgggaggga
     1921 tttacctgct tgcagccgaa tatgagcgct acggggcgcg tatggccctc tgtggtggtt
     1981 tactgcgttt cgggtggtct accctcaagg aaaccggaga aacgcgtctg aggctgcgtg
     2041 aggcgcattt ctgccgtgtc cggcattgtc ctgtctgcca gtggaggcgc tccctgatgt
     2101 ggcaagcccg tttctaccag tccctgccgc gtatcgtggc ggattatccc gatgcccgct
     2161 ggatgttcct gactctgacc gtgcgcaact gtgcgatcgg ggagctgggc gagatgctga
     2221 accggatgaa tgcagctttt cagcgcatga aggttcgcaa ggagttccgg cctgtgcagg
     2281 gctggatacg taccacggaa gtcacccgcg ggagcgacgg cagcgcacac ccgcacttcc
     2341 acaccctgat gatggtgccg cctggcatgc taaatgggaa aagttacgtc aggcatgaac
     2401 gctgggttga actctggcgg gagtgtctgc gggtcgatta tgacccgaat gttgatgtcc
     2461 gggcagtgaa acctcgtaag ccgaagggcg gcgaatcgct ggcctgcgcg accgccgaac
     2521 tggtgcgcgg tgcggtggcc gaaaccctga aatattccac gaagccggct gacatggtgg
     2581 ccgatcctga atggttcctc gaactgaccc gccagacgca caagcgccgc tttgtggcga
     2641 ccggcggcgc actcaaagac gtgctgaaac tcgatcagga aactgacgcc gacatggtga
     2701 tcggtgatga tatttccgag ggcgacgatg acggttcacg aatcgcgttc gagtggaaaa
     2761 ccgaggtcag aaagtaccgt cgctcaccga cgaaagataa aactgaatca ggctagcggg
     2821 gtgtcggggt gcacccctga ccagatggca attgtgatag cgtcgcgtgt gacggtatta
     2881 caattacaca tcctgtcccg aaaattcccg ccgtttctcg gttttttgag cgtcgcagac
     2941 cgcacgacaa acgaacctaa ggtgagtttg tataagtgcg cacttcgtga gattccctga
     3001 ctgccagttt gtcgattgcg cggaacggct gcggcacgaa aacggcaaaa tgatttactc
     3061 gccgtttgtg tgggttgttt tgtggggtgt caatggggtt gtggtctttt ttgtgggtta
     3121 aagtgtgggt gattgtgtgg gctgtgtgtt ttgagttgtg ggtgattatg tgggtcattg
     3181 tgtgggctgt atgcacggca tttttttgtt ctcctaaaac acaggcacga taagcggcgt
     3241 acacaaaacg gggcgtttcg ctccgtcgct tgtgccaaag gggacacccc tttgcaaccc
     3301 tgtgcggttc tacgaacctg gtcaggactg cgccccgaca ccccgccaac gcctcacgga
     3361 acgcgaaaaa attccgcgta ccgttcaccg ttccctgatt cgtcaaacag aaaatcgcgg
     3421 gggcccgcgc ctccggcgtg ggttccgatt ttgtgattga cgacggcacg ggaaaaacac
     3481 tggggatggt ggttggtgtc acgcagtgag gccaaccacc tgcaagacgg ttttttttgt
     3541 tgttcacaaa atcggggtga aagtctgtgg atgagatggg tgtaagtggg tggggttggg
     3601 tgttttgggt tactgaaaat cccgctcaaa attcaagcga atctcgcgcg cgatccttgt
     3661 atttatactt aagggataac tctaggattc aaattcgcct ccagcccttg tgccgcaagg
     3721 cctgaagggg gatttgtcgg aaaatggttt tggagttatt ctgtcgggag tggtcgcatt
     3781 aaaagcgacc cccgcaacga gggcaatcgt tcgggggtgt gaccacctgt aggaattcga
     3841 attggtgata cgactaacac aacaggtgat atggcaatga taacacgtca gatgagccat
     3901 cgcccactat cgggtggtgc gcatgaaaaa ccctgatctc cagaacctca cggactattc
     3961 cccctcagat gcgccctggg acgctcacag aagcgtttct gatgacgtgg gagggattta
     4021 cctgcttgca gccgaatatg agcgctacgg ggcgcgtatg gccctctgtg gtggtttact
     4081 gcgtttcggg tggtctaccc tcaaggaaac cggagaaacg cgtctgaggc tgcgtgaggc
     4141 gcatttctgc cgtgtccggc attgtcctgt ctgccagtgg aggcgctccc tg
//
