LOCUS       NZ_CP140407             2096 bp    DNA     circular CON 23-DEC-2023
DEFINITION  Salmonella enterica strain PNUSAS200857 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP140407
VERSION     NZ_CP140407.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19088490
            Assembly: GCF_018311215.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
REFERENCE   3  (bases 1 to 2096)
  CONSRTM   PulseNet: The National Subtyping Network for Foodborne Disease
            Surveillance
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAY-2021) Enteric Diseases Laboratory Branch, Centers
            for Disease Control and Prevention, 1600 Clifton Rd., MS C03,
            Atlanta, GA 30333, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/23/2023 12:15:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,669
            CDSs (total)                      :: 4,544
            Genes (coding)                    :: 4,433
            CDSs (with protein)               :: 4,433
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 45 of 111
            Pseudo Genes (incomplete)         :: 83 of 111
            Pseudo Genes (internal stop)      :: 20 of 111
            Pseudo Genes (multiple problems)  :: 34 of 111
            Pseudo Genes (short protein)      :: 1 of 111
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP140407.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS200857"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            551..1540
                     /locus_tag="U2S68_RS23345"
                     /old_locus_tag="U2S68_23345"
     CDS             551..1540
                     /locus_tag="U2S68_RS23345"
                     /old_locus_tag="U2S68_23345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1543..1624
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(1267..1458)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 tccgcgtacc gttcaccgtt ccctgattcg tcaaacagaa aatcgcgggg gcccgcgcct
       61 ccggcgtggg ttccgatttt gtgattgacg acggcacggg aaaaacactg gggatggtgg
      121 ttggtgtcac gcagtgaggc caaccacctg caagacggtt ttttttgttg ttcacaaaat
      181 cggggtgaaa gtctgtggat gagatgggtg taagtgggtg gggttgggtg ttttgggtta
      241 ctgaaaatcc cgctcaaaat tcaagcgaat ctcgcgcgcg atccttgtat ttatacttaa
      301 gggataactc taggattcaa attcgcctcc agcccttgtg ccgcaaggcc tgaaggggga
      361 tttgtcggaa aatggttttg gagttattct gtcgggagtg gtcgcattaa aagcgacccc
      421 cgcaacgagg gcaatcgttc gggggtgtga ccacctgtag gaattcgaat tggtgatacg
      481 actaacacaa caggtgatat ggcaatgata acacgtcaga tgagccatcg cccactatcg
      541 ggtggtgcgc atgaaaaacc ctgatctcca gaacctcacg gactattccc cctcagatgc
      601 gccctgggac gctcacagaa gcgtttctga tgacgtggga gggatttacc tgcttgcagc
      661 cgaatatgag cgctacgggg cgcgtatggc cctctgtggt ggtttactgc gtttcgggtg
      721 gtctaccctc aaggaaaccg gagaaacgcg tctgaggctg cgtgaggcgc atttctgccg
      781 tgtccggcat tgtcctgtct gccagtggag gcgctccctg atgtggcaag cccgtttcta
      841 ccagtccctg ccgcgtatcg tggcggatta tcccgatgcc cgctggatgt tcctgactct
      901 gaccgtgcgc aactgtgcga tcggggagct gggcgagatg ctgaaccgga tgaatgcagc
      961 ttttcagcgc atgaaggttc gcaaggagtt ccggcctgtg cagggctgga tacgtaccac
     1021 ggaagtcacc cgcgggagcg acggcagcgc acacccgcac ttccacaccc tgatgatggt
     1081 gccgcctggc atgctaaatg ggaaaagtta cgtcaggcat gaacgctggg ttgaactctg
     1141 gcgggagtgt ctgcgggtcg attatgaccc gaatgttgat gtccgggcag tgaaacctcg
     1201 taagccgaag ggcggcgaat cgctggcctg cgcgaccgcc gaactggtgc gcggtgcggt
     1261 ggccgaaacc ctgaaatatt ccacgaagcc ggctgacatg gtggccgatc ctgaatggtt
     1321 cctcgaactg acccgccaga cgcacaagcg ccgctttgtg gcgaccggcg gcgcactcaa
     1381 agacgtgctg aaactcgatc aggaaactga cgccgacatg gtgatcggtg atgatatttc
     1441 cgagggcgac gatgacggtt cacgaatcgc gttcgagtgg aaaaccgagg tcagaaagta
     1501 ccgtcgctca ccgacgaaag ataaaactga atcaggctag cggggtgtcg gggtgcaccc
     1561 ctgaccagat ggcaattgtg atagcgtcgc gtgtgacggt attacaatta cacatcctgt
     1621 cccgaaaatt cccgccgttt ctcggttttt tgagcgtcgc agaccgcacg acaaacgaac
     1681 ctaaggtgag tttgtataag tgcgcacttc gtgagattcc ctgactgcca gtttgtcgat
     1741 tgcgcggaac ggctgcggca cgaaaacggc aaaatgattt actcgccgtt tgtgtgggtt
     1801 gttttgtggg gtgtcaatgg ggttgtggtc ttttttgtgg gttaaagtgt gggtgattgt
     1861 gtgggctgtg tgttttgagt tgtgggtgat tatgtgggtc attgtgtggg ctgtatgcac
     1921 ggcatttttt tgttctccta aaacacaggc acgataagcg gcgtacacaa aacggggcgt
     1981 ttcgctccgt cgcttgtgcc aaaggggaca cccctttgca accctgtgcg gttctacgaa
     2041 cctggtcagg actgcgcccc gacaccccgc caacgcctca cggaacgcga aaaaat
//
