LOCUS       NZ_CP139834             1423 bp    DNA     linear   CON 21-DEC-2023
DEFINITION  Acinetobacter baumannii strain Nord12-3 plasmid pNord12_4.
ACCESSION   NZ_CP139834
VERSION     NZ_CP139834.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38635275
            Assembly: GCF_034422775.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Braun,S.D.
  TITLE     DRESI Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Braun,S.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2023) Optical Molecular Diagnostics and System
            Technology, Leibniz Institute of Photonic Technology, Albert
            Einstein Strasse 9, Jena 07745, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 02-OCT-2020
            Assembly Method                   :: Flye v. 2.8.1-b1684
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 109.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/21/2023 04:43:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,982
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,708
            CDSs (with protein)               :: 3,708
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 106 of 179
            Pseudo Genes (incomplete)         :: 69 of 179
            Pseudo Genes (internal stop)      :: 31 of 179
            Pseudo Genes (multiple problems)  :: 24 of 179
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139834.1.
            Bacteria and source DNA available from Leibniz-IPHT Jena.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="Nord12-3"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNord12_4"
                     /geo_loc_name="Germany"
                     /collection_date="2017-05-12"
     gene            complement(201..716)
                     /locus_tag="U0542_RS19645"
                     /old_locus_tag="U0542_19645"
                     /pseudo=""
     CDS             complement(201..716)
                     /locus_tag="U0542_RS19645"
                     /old_locus_tag="U0542_19645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000839337.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication DNA-binding protein"
                     /name="plasmid replication DNA-binding protein"
     gene            complement(794..>1423)
                     /locus_tag="U0542_RS19650"
                     /old_locus_tag="U0542_19650"
                     /pseudo=""
     CDS             complement(794..>1423)
                     /locus_tag="U0542_RS19650"
                     /old_locus_tag="U0542_19650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017401951.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="RepB family plasmid replication initiator
                     protein"
                     /name="RepB family plasmid replication initiator protein"
ORIGIN
        1 tctagtttat agctaaaatt aacataatgt tacctcatac gaaaatggct tgtatactta
       61 tccttataat tcaacgcata tgtagtttct agtttatagc ccgagcatcc ctgtccgggc
      121 tttttttatg atttttcatg tttcacgatc aaaaacaatc aatgttccac ggttttgatt
      181 agtctgatta aatagtccta tcacccatag ggcttgaaaa aacggctcca gaagcccctt
      241 tttctggttc tggctcaata tgttcaggga ctggaatacg cttattctcg ataacctctg
      301 attccttagg aggcatagct atgacgtcct ctttttcttc tactgtggat tctgcctgtg
      361 ttgatccagg atcatcagat tgtgttgtat tggttttgga gcttccaata ggcgttgcat
      421 agtttcaatt tgattttgat agaagctttc tctatttttg catcatctag ctgatttttt
      481 agcaggtcta tctgctgtct aaggagtaaa acttctgccg aatttggact gtctactttt
      541 acagtttctt ttacactctg tttttgtact ggctcaccaa atacccggat cgcttctgca
      601 agatcaatct tattatcaga atttttactt aaaatacctt tctttatatt gttgtaaatg
      661 gtttgtcgat taatattgta aagcttagaa agctcaagaa ctgtaaggct tttcatgtgt
      721 aaatctctgc ctaatcttgt aaaaaattag tgtctattag actgtctaat agacaaatca
      781 gcaagtctat cttctatgca gctttgaagc ctactttttg gagataagga tagagttctt
      841 taaacttttc tggttttgaa gcatttctgc aatgcgtaca gcgaattgcg gatagctttc
      901 tgtaccatga gaatattttc ccatttcagg aagttctgac aatttatggg aaaacagatg
      961 gcgttgagca tctgtcattt ttgagaaaat atctatagtg tctgggtcac gcttattttt
     1021 tattggcaga ttactcgttt ttttctggtt tgaaagtgaa tgtaaaaaac ccggaaatag
     1081 aacgtccttt tttatgttgc tcatatttag ctgtttatct gttaactcat ttacctgctt
     1141 aacagcaaaa tctgatacta tgttttaaag ttaatttatt gttttgaata ttgaggtttg
     1201 acaccgctgt tgtctaaaga tagatagatc aaaaagtggc gtttttccgg cagatctcca
     1261 ttgaattaat agctcgtata gccgaatagt atgagctact taacctagaa acctgctgca
     1321 attcatattt agtgaagttt tcttcaagtc gagttatgag tggaacattg agattcatac
     1381 ccaattttag gacccaacga caatctaaag acaccaataa ttc
//
