LOCUS       NZ_CP139833             1016 bp    DNA     linear   CON 21-DEC-2023
DEFINITION  Acinetobacter baumannii strain Nord12-3 plasmid pNord12_3.
ACCESSION   NZ_CP139833
VERSION     NZ_CP139833.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38635275
            Assembly: GCF_034422775.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Braun,S.D.
  TITLE     DRESI Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Braun,S.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2023) Optical Molecular Diagnostics and System
            Technology, Leibniz Institute of Photonic Technology, Albert
            Einstein Strasse 9, Jena 07745, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 02-OCT-2020
            Assembly Method                   :: Flye v. 2.8.1-b1684
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 109.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/21/2023 04:43:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,982
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,708
            CDSs (with protein)               :: 3,708
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 106 of 179
            Pseudo Genes (incomplete)         :: 69 of 179
            Pseudo Genes (internal stop)      :: 31 of 179
            Pseudo Genes (multiple problems)  :: 24 of 179
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139833.1.
            Bacteria and source DNA available from Leibniz-IPHT Jena.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="Nord12-3"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNord12_3"
                     /geo_loc_name="Germany"
                     /collection_date="2017-05-12"
     gene            complement(222..>1016)
                     /gene="repM"
                     /locus_tag="U0542_RS19640"
                     /old_locus_tag="U0542_19640"
                     /pseudo=""
     CDS             complement(222..>1016)
                     /gene="repM"
                     /locus_tag="U0542_RS19640"
                     /old_locus_tag="U0542_19640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005065049.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=2
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /name="repM"
     Typing          complement(232..1016)
                     /name="rep_cluster_1226"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.143"
                     /coverage="85.0"
                     /evalue="0.0"
ORIGIN
        1 aattagtcga ttatttattt tggcttatgt gtcttttagt cggttatgtt ttttcgaaag
       61 ataaaagtga aattataatg aggaatttta cttttttaat cattaattca tacaaacaga
      121 aattaacata atacacctta tacgaaatgt attcataatt atccttataa ttcaacgctg
      181 tagtttacac cttatacgaa agtataatta tccttataat tttagtttag ttctgcgttt
      241 tgaagcattt ctgcaatgcg tacagcgaat tgcggatctg taccatgaga atattttccc
      301 atttcaggaa gttctgacaa tttatgggaa aaacagatgg cgttgagcat ctgtcatttt
      361 gagaaaatat cttttatagt gtctgggtca cgcttatttt ttatttactc gtttttttct
      421 gtttgaaagt gaattagaaa aacctgaaat agaacgccct tttttatgtt gctcatattt
      481 agctgttata tctgttaact catttacctg cttaagagca aaatctaaaa catatcaatt
      541 ttttaaagtt actcattgtt ttgtattgat gaggtttgac accaagttgt tgtctaaaga
      601 tagatagatc aaaaagtggc gtttttccgg cagatctcca ttgaattaat agctcgtata
      661 gccgaatagc atatgagcta cttaacctag aaacctgctg caattcatat ttagtgaagt
      721 tttcttcaag tcgagttatg agtggaacaa tgtcttgggt gaatcgtagg aaaataattc
      781 ctgattgaga ttcataccca attttgtcga cccaacgaca atgaaagcta cgatccttac
      841 ccgtcttagg attaatgtca tggtatgtga catagcgatc aaataagctt ttagatgcct
      901 ccctgagtac ggtataagcg gtatgtttct cgacattaaa agtatttata taactacttg
      961 catgtactaa aagactattt tcagttatcc catgtccagt ttctcgagct tcagca
//
