LOCUS       NZ_CP139830             2421 bp    DNA     circular CON 21-DEC-2023
DEFINITION  Acinetobacter baumannii strain Nord12-3 plasmid pNord12_9, complete
            sequence.
ACCESSION   NZ_CP139830
VERSION     NZ_CP139830.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38635275
            Assembly: GCF_034422775.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Braun,S.D.
  TITLE     DRESI Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2421)
  AUTHORS   Braun,S.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2023) Optical Molecular Diagnostics and System
            Technology, Leibniz Institute of Photonic Technology, Albert
            Einstein Strasse 9, Jena 07745, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 02-OCT-2020
            Assembly Method                   :: Flye v. 2.8.1-b1684
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 109.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/21/2023 04:43:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,982
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,708
            CDSs (with protein)               :: 3,708
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 106 of 179
            Pseudo Genes (incomplete)         :: 69 of 179
            Pseudo Genes (internal stop)      :: 31 of 179
            Pseudo Genes (multiple problems)  :: 24 of 179
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139830.1.
            Bacteria and source DNA available from Leibniz-IPHT Jena.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="Nord12-3"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNord12_9"
                     /geo_loc_name="Germany"
                     /collection_date="2017-05-12"
     gene            complement(936..1877)
                     /gene="repM"
                     /locus_tag="U0542_RS00755"
                     /old_locus_tag="U0542_00755"
     CDS             complement(936..1877)
                     /gene="repM"
                     /locus_tag="U0542_RS00755"
                     /old_locus_tag="U0542_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000711927.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_073820198.1"
                     /translation="MKDLIVKDNALINASYNLDLVEQRLILLSIIEARESGKGINANDP
                     LTIHAESYINHFNVHRNTAYQALKDACKDLFARQFSYQEQRGKGIANITSRWVSQIAYI
                     DNTASVELIFAPAIIPLITRLEEQFTSYELQQIKGLSTAYAIRLYELLIAWRSTGKTPI
                     IETQELRRKLGVLDGEYKMIADFKKRVFEPSIKQINEHTDITVKSEQHKTGRSITGFSF
                     RFKQKAQPKLEQKTDPKRDPNTPDFFVEMTDAQRHLFGNKLAHDARVQSEYSHLIGTGS
                     YEDFAKLLADMLAEEQHFKMFYPLLVEHGYKA"
                     /name="repM"
ORIGIN
        1 taaatctcgt tataacgcaa tagtaagctt gtaatcaggg aaaaggcagg gacgaaattt
       61 ttataacgct caatcgctcg tagacactcg ctcggttaat tctatctgtg ctttctatgg
      121 tgcttttatt ggatttttag tgcaccgata aaagcacagt aaaaggcaca gacacttcgc
      181 ttcgctgcgc ctaaaaacaa ttaccgtaca agctcgcttc gctcgtcctt cctggacgtc
      241 aggattcctt gtactttaag ggctggacgc ccttaataat cgttttttgt tgcctttcac
      301 tttccgctat cgctccaagt tgcagcgcac ttcgtgctcg cgccccgtca tcctcctacg
      361 gagttgaccc accccctttt aggtgcatat ttcgcttagg ctcgtatgtc cttcggattc
      421 gctgaacgct tacactaaaa cgaggtgggt caactcccct tcgggatagt ttgacggggt
      481 gggcttgccc cccaacaact aacgacatct ggggatgtct aaagttcgtg tccactccct
      541 tttacgttgt cggctccccc cagtcatctc cgctggggct tcgatgatgt tccgctttcg
      601 cttcacaccc cttcggggct ttctttggct aaagccaaaa tgaaaagcac agatagattt
      661 ttagagcgag tgtctacgag tgaactgatg aaatgcaaaa acaagacaca ccctccctga
      721 ttacatgctc tatttgctca taggatgcga tatttcgagc tttgctcgca gtgggtatgt
      781 gaatgtagct tgttggattt ggatcgctta aaacgcaatt tagaggggtt ggtggctatc
      841 caccaatatt ggcgtattgg tggcgccacc ttatcttgta catagataag gaaggtcgaa
      901 atgacttatc taccattgat agaatacgac aagatttatg ctttgtaacc atgctctaca
      961 agcaaagggt aaaacatctt aaaatgctgt tcttctgcaa gcatatccgc cagtaatttt
     1021 gcaaagtctt catagcttcc agtaccaatt aaatggctgt attcgctttg tacacgagca
     1081 tcatgggcta gtttgttccc aaataagtgg cgttgtgcat cggtcatttc gacaaagaaa
     1141 tcaggtgtgt ttggatctct tttagggtcg gttttttgtt ctaattttgg ctgtgccttt
     1201 tgtttgaatc ggaatgaaaa tccagtaatt gaacgacctg ttttgtgctg ttccgactta
     1261 acggttatgt ctgtatgttc gtttatttgc ttgatagatg gctcaaatac tcgcttttta
     1321 aagtcagcaa tcattttata ttcaccatca agaacaccta acttcctgcg aagttcttga
     1381 gtttcaataa ttggcgtttt ccctgtactc ctccaagcga tgagcaattc ataaagacga
     1441 attgcataag ctgtgcttag ccccttaatt tgctgtaact cataacttgt gaactgttct
     1501 tctagtcttg ttattaaagg gatgattgca ggggcgaaaa taagctctac agatgcagta
     1561 ttgtctatgt aggcgatttg agaaacccaa cgactggtta tatttgcaat ccctttccca
     1621 cgttgttctt ggtaactaaa ttggcgtgca aaaaggtctt tgcaagcatc ttttaacgct
     1681 tggtaagctg tgtttctgtg aacattaaaa tggttaatat agctttctgc gtgaattgtt
     1741 aaagggtcat ttgcattgat tcctttacca ctttcgcgag cttcgataat tgataacaga
     1801 ataagtcgct gttcaaccaa atccaaatta tagcttgcgt taattaaagc gttatctttc
     1861 acaatcaaat ctttcattat aaatcttcta atatgacatt tttattctag tcattatatt
     1921 gacattgtaa tttgtgtcaa tatatcaact ctaaacagac aaaacgttgc aaggtaaatg
     1981 ctgttttatg gacaatattt tttttgtcag tacttgcaag gtaagtgtcc acatattgaa
     2041 aaaatcttgc aaggtaagtg tccacatatt gcaaggtaag tgtccacata taagcgctga
     2101 aacgcacgta tatcaacgct ttcagcgtac ctaaaagcat ttaaaagctt ttttattatt
     2161 aaaagcccaa aaaaattaaa aacggcattt aaaactgccc tatgttttcg cttcgctcaa
     2221 actctattga atctcgcttc gctcgattcc tgggggcagt tttttcaaag accagctagg
     2281 acgctaaaaa caagaatgga ttcgcttcgc tcataaagct ttatgctcgc ttcgctcgtc
     2341 atgaagccaa ttaatacagt cgcttcgctc tgtaaatctc gttataacgc aatagtaagc
     2401 ttgtaatcag ggaaaaggca g
//
