LOCUS       NZ_CP139829             4217 bp    DNA     linear   CON 21-DEC-2023
DEFINITION  Acinetobacter baumannii strain Nord12-3 plasmid pNord12_8.
ACCESSION   NZ_CP139829
VERSION     NZ_CP139829.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38635275
            Assembly: GCF_034422775.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 4217)
  AUTHORS   Braun,S.D.
  TITLE     DRESI Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4217)
  AUTHORS   Braun,S.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2023) Optical Molecular Diagnostics and System
            Technology, Leibniz Institute of Photonic Technology, Albert
            Einstein Strasse 9, Jena 07745, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 02-OCT-2020
            Assembly Method                   :: Flye v. 2.8.1-b1684
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 109.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/21/2023 04:43:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,982
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,708
            CDSs (with protein)               :: 3,708
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 106 of 179
            Pseudo Genes (incomplete)         :: 69 of 179
            Pseudo Genes (internal stop)      :: 31 of 179
            Pseudo Genes (multiple problems)  :: 24 of 179
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139829.1.
            Bacteria and source DNA available from Leibniz-IPHT Jena.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4217
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="Nord12-3"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNord12_8"
                     /geo_loc_name="Germany"
                     /collection_date="2017-05-12"
     gene            5..826
                     /gene="blaOXA"
                     /locus_tag="U0542_RS00730"
                     /old_locus_tag="U0542_00730"
                     /pseudo=""
     CDS             5..826
                     /gene="blaOXA"
                     /locus_tag="U0542_RS00730"
                     /old_locus_tag="U0542_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002002480.1"
                     /GO_function="GO:0008800 - beta-lactamase activity
                     [Evidence IEA]"
                     /GO_process="GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /name="blaOXA"
     gene            917..1623
                     /locus_tag="U0542_RS00735"
                     /old_locus_tag="U0542_00735"
                     /pseudo=""
     CDS             917..1623
                     /locus_tag="U0542_RS00735"
                     /old_locus_tag="U0542_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586042.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /name="IS1 family transposase"
     gene            1797..2623
                     /locus_tag="U0542_RS00740"
                     /old_locus_tag="U0542_00740"
                     /pseudo=""
     CDS             1797..2623
                     /locus_tag="U0542_RS00740"
                     /old_locus_tag="U0542_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000073659.1"
                     /GO_function="GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]; GO:0043565 - sequence-specific DNA
                     binding [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /name="AraC family transcriptional regulator"
     gene            2673..3278
                     /locus_tag="U0542_RS00745"
                     /old_locus_tag="U0542_00745"
     CDS             2673..3278
                     /locus_tag="U0542_RS00745"
                     /old_locus_tag="U0542_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="WP_000447788.1"
                     /translation="METILAFCAFSFVASITPGPTNFLILSTSHQFSIKKTLGLIFGGS
                     IGAASLVLITGLGIGTTLNEYPKIQLILSFTGGIWLSYIGWKIFNYRPDLESKIQNQNK
                     KNGFFTGFFLQFINPKSWLMAIAVITVYTAQLANYYQSLILFSFIFMLISLPCLFIWAY
                     LGKITKKILSTAHHMVLFNRVLGTVLLISVWYPILHAI"
                     /name="LysE family translocator"
     gene            3375..3658
                     /locus_tag="U0542_RS00750"
                     /old_locus_tag="U0542_00750"
                     /pseudo=""
     CDS             3375..3658
                     /locus_tag="U0542_RS00750"
                     /old_locus_tag="U0542_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004647749.1"
                     /GO_function="GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     ARG             55..422
                     /name="OXA-97"
                     /gene="OXA-97"
                     /gene_name="OXA beta-lactamase; OXA-58-like beta-lactamase"
                     /tool="rgi"
                     /drug_class="carbapenem; penam"
                     /identity="98.91"
                     /coverage="43.57"
     ARG             363..826
                     /name="OXA-58"
                     /gene="OXA-58"
                     /gene_name="OXA beta-lactamase; OXA-58-like beta-lactamase"
                     /tool="rgi"
                     /drug_class="carbapenem; penam"
                     /identity="100.0"
                     /coverage="55.0"
ORIGIN
        1 aatcatgaaa ttattaaaat tattaaaata ttgtattggg gcttgtgctt agtatgagtc
       61 gagcaaaaac aagtacaatt ccacaagtga ataactcaat catcgatcag aatgttcaag
      121 cgctttttaa tgaaatctca ggtgatgctg tgtttgtcac atatgatggt caaaatatta
      181 aaaaatatgg cacgcattta gaccgagcaa aaacagctta tattcctgca tctacattta
      241 aaattgccaa tgcactaatt ggtttagaaa atcataaagc aacatctaca gaaatattta
      301 agtgggatgg aaagccacgt tttttaaagc atgggacaaa gattttactt tgggcgaagc
      361 catgcaagca tctacagtgc ctgtatatca agaattggca cgtcgtattg gtccaagctt
      421 aatgcaaagt gaattgcaac gtattggtta tggcaatatg caaataggca cggaagttga
      481 tcaattttgg ttgaaagggc ctttgacaat tacacctata caagaagtaa agtttgtgta
      541 tgatttagcc caagggcaat tgccttttaa acctgaagtt cagcaacaag tgaaagagat
      601 gttgtatgta gagcgcagag gggagaatcg tctatatgct aaaagtggct ggggaatggc
      661 tgtagacccg caagtgggtt ggtatgtggg ttttgttgaa aaggcagatg ggcaagtggt
      721 ggcatttgct ttaaatatgc aaatgaaagc tggtgatgat attgctctac gtaaacaatt
      781 gtctttagat gtgctagata agttgggtgt ttttcattat ttataagaat tagaagtttg
      841 aggttaatct atttttggta gtgtttcaaa aagtatgctg aagaaaaagc cgattggatt
      901 ttgataaaat agagaaatgc aaataactct agcaatcaaa tgtccaacct gcctcagtga
      961 tagtataaag aaaaatggta tcaaagtaga tgggaaacaa aactatcagt gcaaagactg
     1021 taaacgtcag tttattggtg atcatgcact gagctatcta ggatgtaagt caggtattac
     1081 tcgtaaaata ttacagttga tggtcagagg cagcggtata cgagatattg ctgaagttga
     1141 gcgcatcagt atcggtaaag ttttacgtac tttaactgaa tcaacctatg aaattcagcc
     1201 tcagcaaagt cattatgaat ctctcgaagt agatgagttc tggaattttg ttggaaataa
     1261 aaagaataaa caatggctta tttacgccta tcatcgagaa acaggtgaaa ttgttgctta
     1321 tgtttggggt aaacgagatt tagctacagt ctaacaattg aagacaaagc ttaaacaatt
     1381 agatattcac tacacccgaa ttgcaagtga tcattgggac agtttcatca ctgcttttaa
     1441 aaatggtaag caaagtattg gtaaattttt tactgtaggt attgaaggca ataattgcaa
     1501 aataaggcat agaattaggc gtagcttcag aagaagctgt aatttttcaa aaaagcttga
     1561 aaaccatttt aaagcttttg atttagcctt cttttctttt acatcaataa tggcttcatt
     1621 taaaggcagc atactttttg aagcaccacc aaaattttat gttaagtaga gactaaaaat
     1681 gcccttgatt aagggcttac aagggcattt tgtataaggt gtattatgtt aattttagaa
     1741 tttcttcatt agataatttt tgataagcta aatccattag gactaattaa gtaaatatga
     1801 gcaattgggt caatgtcaca caggataagt ctacaggtat agaactaatt catgcccact
     1861 tcaaaggctt tgcatacgat cctcatctac actcaagtta tcttataggg gtaacagagt
     1921 taggacatca acaattcaat tgtagaaaaa aattattgat agctatcaag gtcaaacttt
     1981 catgcttgaa cctgaagaag ttcatgatgg taatgcacca gatcctctcg gcttcactta
     2041 taaaatgatg catttagatc cagcatggtt aaaaaaaagc tatgaaggaa tatttaatga
     2101 gcctatcgaa cttgctatcg aatcaaccct acgttctgat cctcaacttt cacatttgat
     2161 actttcaacc tacaatatat tgaataacaa tgaatctcaa ttgatgaaag atacgtattt
     2221 agatctttta ttagaaaact tagtaaataa aaaaatttta tataaacgtg aaaagtctat
     2281 ccagacatta cctaatattg cattaaagct aaaagaaatt ttacatgaaa gtctctttca
     2341 tgatttagac ttacaaacac tctcaacatt ggtgaaaaca gatcgttttt atattaaccg
     2401 tgtatttaaa aaaaacttta actgttctcc acatcaatat ctgatccaac tccgtttaaa
     2461 taaggcaaaa gaattgttaa gaaaaggatt atcagcaaca actgttgctt catatctttg
     2521 tttttctgat caaagtcatc taggtcgatg gtttaaacgt tgttatggca taacattgaa
     2581 tcaatatcaa aaagcgtgca caaatgttct agatatatct tgaagatatt tatcaaacta
     2641 gccaaatagt ttattaattt ttggatttta ttttggaaac gattttagct ttttgtgcct
     2701 tttcttttgt tgcatcaatt actcctggac caaccaattt ccttattctt agtacaagtc
     2761 atcaattcag tattaaaaaa acattaggct taatcttcgg tggaagtatt ggtgctgcat
     2821 cattagtctt aattacagga cttggaattg gtacaacact caatgaatac cccaagattc
     2881 aattaatatt aagtttcact ggcggcattt ggttaagcta tattggatgg aaaattttta
     2941 attatagacc tgatctagaa tctaaaatcc aaaatcaaaa taagaaaaat ggttttttta
     3001 caggcttctt tttacagttt atcaacccta aaagctggtt gatggctatt gctgttatta
     3061 ctgtttatac agcacaacta gctaactact atcagtcact cattctattt tcattcatct
     3121 ttatgctgat ttctctacct tgtttattta tttgggctta tttaggaaaa atcacaaaaa
     3181 aaatactttc tacagctcat catatggtgc tctttaatcg agtattaggt actgttttac
     3241 ttatttcagt atggtatcca atattgcatg ctatttaaca taatggggta atacgaaatt
     3301 aatggatgtc catatagatt acttgcatat tgtattcgat cgaatacaat atggtgagaa
     3361 aacaaggaat cctcatgatt gaaattaaac gtctgccaga gtttgatgaa tggttggatg
     3421 gcattaaaga caatatgacc cgtattcgcc tgaatcgtag attggataag gttcaacgtg
     3481 gaaattgggg agacattaag cctcttcaag atggcgtttg ggaaatgaga gagttcttcg
     3541 gtgctggatg gagaatgtgc tacatccaac atggtgacgt agtgattgat ggaggagata
     3601 aatcgactca acaacgatat cgattgcagt caaattatcg aaaacattgg aggattaaaa
     3661 tggttaaagt cgctgatttc tatcgagtcg ctcaaaactg gattggatga tatggtgaag
     3721 agaatgatac tcaacaacaa gatatcgatg gtgaagtcaa taacctaagt ataacgggta
     3781 ttatgttaat tttagagaaa aaatttaaaa aatgaagaaa ctacaaatca tcttttcagt
     3841 aactaaagaa atgtttatcg ctaaagctta aaactcatga tttaattaag gctgatcact
     3901 ttaataaagc tcaattaata acaattaatt ctgatgcaat gactaatttc ggaaattatg
     3961 gttatacact tcaagacatg agaaggatta agaaaaaatt tagcaatttt gcaaactcaa
     4021 attaattaga taccctgcat ttaacataat ggctgttatg cgaaacgaga ttgtaactcc
     4081 aaaatagaaa tgtccggttt ctccaaagta aaatgtccgc ttttagaata tgcacttttt
     4141 gcaattttct tagcggacgg tttgcaagaa atatgttggt gtgtggtgaa cttaaacatt
     4201 gtcggtcttg tctgtgg
//
