LOCUS       NZ_CP139828             3371 bp    DNA     linear   CON 21-DEC-2023
DEFINITION  Acinetobacter baumannii strain Nord12-3 plasmid pNord12_7.
ACCESSION   NZ_CP139828
VERSION     NZ_CP139828.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38635275
            Assembly: GCF_034422775.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Braun,S.D.
  TITLE     DRESI Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3371)
  AUTHORS   Braun,S.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2023) Optical Molecular Diagnostics and System
            Technology, Leibniz Institute of Photonic Technology, Albert
            Einstein Strasse 9, Jena 07745, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 02-OCT-2020
            Assembly Method                   :: Flye v. 2.8.1-b1684
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 109.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/21/2023 04:43:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,982
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,708
            CDSs (with protein)               :: 3,708
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 106 of 179
            Pseudo Genes (incomplete)         :: 69 of 179
            Pseudo Genes (internal stop)      :: 31 of 179
            Pseudo Genes (multiple problems)  :: 24 of 179
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139828.1.
            Bacteria and source DNA available from Leibniz-IPHT Jena.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="Nord12-3"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNord12_7"
                     /geo_loc_name="Germany"
                     /collection_date="2017-05-12"
     gene            <187..522
                     /locus_tag="U0542_RS00705"
                     /old_locus_tag="U0542_00705"
                     /pseudo=""
     CDS             <187..522
                     /locus_tag="U0542_RS00705"
                     /old_locus_tag="U0542_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002002480.1"
                     /GO_function="GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /name="penicillin-binding transpeptidase domain-containing
                     protein"
     gene            614..1316
                     /locus_tag="U0542_RS00710"
                     /old_locus_tag="U0542_00710"
                     /pseudo=""
     CDS             614..1316
                     /locus_tag="U0542_RS00710"
                     /old_locus_tag="U0542_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586042.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /name="IS1 family transposase"
     gene            1490..2315
                     /locus_tag="U0542_RS00715"
                     /old_locus_tag="U0542_00715"
                     /pseudo=""
     CDS             1490..2315
                     /locus_tag="U0542_RS00715"
                     /old_locus_tag="U0542_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000073659.1"
                     /GO_function="GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]; GO:0043565 - sequence-specific DNA
                     binding [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /name="AraC family transcriptional regulator"
     gene            2538..2969
                     /locus_tag="U0542_RS00720"
                     /old_locus_tag="U0542_00720"
     CDS             2538..2969
                     /locus_tag="U0542_RS00720"
                     /old_locus_tag="U0542_00720"
                     /inference="COORDINATES: protein motif:HMM:NF013933.3"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /GO_process="GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="WP_322437252.1"
                     /translation="MGTTLNEYPKIQLILSFTGGIWLSYIGWKIFNYRPDLESKIQNQN
                     KKNGFFTGFFLQFINPKSWLMAIAVITVYTAQLANYYQSLILFSFIFMLISLPCLFIWA
                     YLGKITKKILSTAHHMVLFNRVLGTVLLISVWYPILHAI"
                     /name="LysE family transporter"
     gene            3066..>3371
                     /locus_tag="U0542_RS00725"
                     /old_locus_tag="U0542_00725"
                     /pseudo=""
     CDS             3066..>3371
                     /locus_tag="U0542_RS00725"
                     /old_locus_tag="U0542_00725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004647749.1"
                     /GO_function="GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     ARG             200..522
                     /name="OXA-58"
                     /gene="OXA-58"
                     /gene_name="OXA beta-lactamase; OXA-58-like beta-lactamase"
                     /tool="rgi"
                     /drug_class="carbapenem; penam"
                     /identity="99.07"
                     /coverage="38.21"
ORIGIN
        1 gaaatttctc tgtgtttgtc atgatatgat ggtcaaaata ttaaaaatat ggcacgcatt
       61 tagaccgagc aaaacagctt atattcctgc attatattcc tgcatctaca tttaaagtgg
      121 gatggaaagc ccgtttttta aagcatggga caaagatttt actaattggt ttagaaaatc
      181 caagcgttga aagggccttt gacaattaca cctatacaag aagtaaagtt tgtgtatgat
      241 ttagcccaag ggcaattgcc ttttaaacct gaagttcagc aacaagtgaa agagatgttg
      301 tatgtagagc gcagagggga gaatcgtcta tatgctaaaa gtggctgggg aatggctgta
      361 gacccgcaag tgggttggta tgtgggtttt gttgaaaagg cagatgggca agtggtggca
      421 tttgctttaa atatgcaaat gaaagctggt gatgatattg ctctacgtaa acaattgtct
      481 ttagatgtgc tagataagtt gggtgttttt cattatttat aagaattaga agtttgaggt
      541 taatctattt ttggtagtgt ttcaaaaagt atgctgaaga aaaaagccag ttggattttg
      601 gtaaaataaa taaataactc tagcaatcaa atgtccaacc tgcctcagtg atagtataaa
      661 gaaaaatggt atcaaagtag atgggaaaca aaactatcag tgcaaaaaga ctgtaaacgt
      721 cagtttattg gtgatcatgc actgagctat ctaggatgta agtcaggtat tactcgtaaa
      781 atattacagt tgatggtcag aggcagcggt atacgagata ttgctgaagt tgagcgcatc
      841 agtatcggta aagttttacg tactttaact gaatcaacct atgaaattca gcctcagcaa
      901 agtcattatg aatctctcga agtagatgag ttctggaatt ttgttggaaa taaaaagaat
      961 aaacaatggc ttatttacgc ctatcatcga gaaacaggtg aaattgttgc ttatgtttgg
     1021 ggtaaacgag atttagctac agtccaacaa ttgaagacaa agcttaaaca attagatatt
     1081 cactacaccc gaattgcaag tgatcattgg gacagtttca tcactgcttt taaaaatggt
     1141 aagcaaagta ttggtaaatt ttttactgta ggtattgaag gcaataattg caaaataagg
     1201 catagaatta ggcgtagctt cagaagaagc tgtaattttt caaaaaagct tgaaaaccat
     1261 tttaaagctt ttgatttagc cttcttttct tttacatcaa taatggcttc atttaaaggc
     1321 agcatacttt ttgaagcacc accaaaattt tatgttaagt agagactaaa aatgcccttg
     1381 attaagggct tacaagggca ttttgtataa ggtgtattat gttaatttta gaatttcttc
     1441 attagataat ttttgataag ctaaatccat taggactaat taagtaaata tgagcaattg
     1501 ggtcaatgtc acacaggata agtctacagg tatagaacta attcatgccc acttcaaagg
     1561 ctttgcatac gatcctcatc tacactcaag ttatcttata ggggtaacag agttaggaca
     1621 tcaacaattc aattgtagaa aaaaaattat tgatagctat caaggtcaaa ctttcatgct
     1681 tgaacctgaa gaagttcatg atggtaatgc accagatcct ctcggcttca cttataaaat
     1741 gatgcattta gatccagcat ggttaaaaaa agctatgaag gaatatttaa tgagcctatc
     1801 gaacttgcta tcgaatcaac cctacgttct gatcctcaac tttcacattt gatactttca
     1861 acctacaata tattgaataa caatgaatct caattgatga aagatacgta tttagatctt
     1921 ttattagaaa acttagtaaa taaaaaaatt ttatataaac gtgaaaagtc tatccagaca
     1981 ttacctaata ttgcattaaa gctaaaagaa attttacatg aaagtctctt tcatgattta
     2041 gacttacaaa cactctcaac attggtgaaa acagatcgtt tttatattaa ccgtgtattt
     2101 aaaaaaactt taactgttct ccacatcaat atctgatcca actccgttta aataaggcaa
     2161 aagaattgtt aagaaaagga ttatcagcaa caactgttgc ttcatatctt tgtttttctg
     2221 atcaaagtca tctaggtcga tggtttaaac gttgttatgg cataacattg aatcaatatc
     2281 aaaaagcgtg cacaaatgtt ctagatatat cttgaagata tttatcaaac tagccaaata
     2341 gtttattaat ttttggattt tattttggaa acgattttag ctttttgtgc cttttctttt
     2401 gttgcatcaa ttactcctgg accaaccaat ttccttattc ttagtacaag tcatcaattc
     2461 agtattaaaa aacattaggc ttaatcttcg gtggaagtat tggtgctgca tcattagtct
     2521 taattacagg acttggaatt ggtacaacac tcaatgaata ccccaagatt caattaatat
     2581 taagtttcac tggcggcatt tggttaagct atattggatg gaaaattttt aattatagac
     2641 ctgatctaga atctaaaatc caaaatcaaa ataagaaaaa tggttttttt acaggcttct
     2701 ttttacagtt tatcaaccct aaaagctggt tgatggctat tgctgttatt actgtttata
     2761 cagcacaact agctaactac tatcagtcac tcattctatt ttcattcatc tttatgctga
     2821 tttctctacc ttgtttattt atttgggctt atttaggaaa aatcacaaaa aaaatacttt
     2881 ctacagctca tcatatggtg ctctttaatc gagtattagg tactgtttta cttatttcag
     2941 tatggtatcc aatattgcat gctatttaac ataatggggt aatacgaaat taatggatgt
     3001 ccatatagat tacttgcata ttgtattcga tcgaatacaa tatggtgaga aaacaaggaa
     3061 tcctcatgat tgaaattaaa cgtctgccag agtttgatga atggttggat ggcattaaag
     3121 acaatatgac ccgtattcgc ccgaatcgta gattgataag gttcaacgtg gaaattgggg
     3181 agacattaag cctcttcaag atggcgtttg ggaaatgaga gagttcttcg gtgctggatg
     3241 gagaatcgta ttacatccaa catggtgatt gattgtaatg cttggtggag gagataaatc
     3301 gactcaacaa caatcgtgca gaaatatgat tgtaaggtca actgcatggt ttcggacatg
     3361 cgaaacgatg g
//
