LOCUS       NZ_CP139816              418 bp    DNA     linear   CON 21-DEC-2023
DEFINITION  Escherichia coli strain FLI21 plasmid pFLI21_7.
ACCESSION   NZ_CP139816
VERSION     NZ_CP139816.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38611544
            Assembly: GCF_034422715.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Braun,S.D.
  TITLE     DRESI Project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Braun,S.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2023) Optical Molecular Diagnostics and System
            Technology, Leibniz Institute of Photonic Technology, Albert
            Einstein Strasse 9, Jena 07745, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 02-OCT-2020
            Assembly Method                   :: Flye v. 2.8.1-b1684
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 476.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/21/2023 05:08:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,128
            CDSs (total)                      :: 5,010
            Genes (coding)                    :: 4,649
            CDSs (with protein)               :: 4,649
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 361
            CDSs (without protein)            :: 361
            Pseudo Genes (ambiguous residues) :: 0 of 361
            Pseudo Genes (frameshifted)       :: 156 of 361
            Pseudo Genes (incomplete)         :: 195 of 361
            Pseudo Genes (internal stop)      :: 44 of 361
            Pseudo Genes (multiple problems)  :: 35 of 361
            Pseudo Genes (short protein)      :: 4 of 361
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139816.1.
            Bacteria and source DNA available from Leibniz-IPHT Jena.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="FLI21"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pFLI21_7"
                     /geo_loc_name="Germany"
                     /collection_date="2017-05-12"
     gene            complement(269..400)
                     /locus_tag="U0532_RS25640"
                     /old_locus_tag="U0532_25640"
     CDS             complement(269..400)
                     /locus_tag="U0532_RS25640"
                     /old_locus_tag="U0532_25640"
                     /inference="COORDINATES: protein motif:HMM:NF016769.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_322444456.1"
                     /translation="MFETTSQALERSDRVCQHLSSQVNSLRDQVENLSCNVSRLMRS"
                     /name="hypothetical protein"
ORIGIN
        1 tcacatatct cgtagaactg ctcccacttc aaggtaatgc actcattccc gttttttctc
       61 attaactcgt ttatttcttt agaaattgct tgagcaccct tagccatttt tactttttac
      121 ctcaattaaa aatcgagata aatatacatt acatagacct tatatcaagt taaaaaaaac
      181 cttaaaaaca acttacatga ctcttaaatt gaaaggccgt gataacgtgt ccgctttttt
      241 tccatctgaa tctggtgttc gtgctgcttc acgagcgcat taaccggctg acgttgcagc
      301 tcaagttctc gacctgatcg cgcaagctgt tcacctgact gctcaagtgc tgacagaccc
      361 tgtcgctgcg ttccagcgcc tgcgaggtag tctcgaacat gtgctgcaaa ctgctgta
//
