LOCUS       NZ_CP139281             3964 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Acinetobacter pittii strain AN37 plasmid pApiAN37a, complete
            sequence.
ACCESSION   NZ_CP139281
VERSION     NZ_CP139281.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38315705
            Assembly: GCF_034072545.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter pittii
  ORGANISM  Acinetobacter pittii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 3964)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S., Guerrero,G., Garza-Gonzalez,E.,
            Lozano-Zarain,P., Volkow,P., Morfin-Otero,Md.R. and Cevallos,M.A.
  TITLE     Acinetobacter pittii: intercontinental dissemination, pathogenetic
            potential, and antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3964)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S. and Miguel,C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2023) Programa de Genomica Evolutiva, Centro de
            Ciencias Genomicas, Av. Universidad s/n, Col Chamilpa, Cuernavaca,
            Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2022
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: AN37_genome
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 11242x
            Sequencing Technology :: DNBseq; Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 00:32:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,856
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,675
            CDSs (with protein)               :: 3,675
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 40 of 86
            Pseudo Genes (incomplete)         :: 35 of 86
            Pseudo Genes (internal stop)      :: 23 of 86
            Pseudo Genes (multiple problems)  :: 10 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139281.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3964
                     /organism="Acinetobacter pittii"
                     /mol_type="genomic DNA"
                     /strain="AN37"
                     /isolation_source="Peritoneal Dialysis Fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:48296"
                     /plasmid="pApiAN37a"
                     /geo_loc_name="Mexico:Puebla, Puebla"
                     /lat_lon="19.0344 N 98.2447 W"
                     /collection_date="2014-11-17"
                     /collected_by="Hospital del nino Poblano"
     gene            join(3775..3964,1..1130)
                     /locus_tag="SOI78_RS19270"
                     /old_locus_tag="SOI78_19270"
     CDS             join(3775..3964,1..1130)
                     /locus_tag="SOI78_RS19270"
                     /old_locus_tag="SOI78_19270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006581734.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_086230553.1"
                     /translation="MQNRQNPQKTTSFIKSAPALSAVVPASRKNRLGTITKFCSNQSQQ
                     GLQQDDTQYKEYRKQTEQLKEKAGQILYTPNAEKQEFRVCYCGKLRISEKMPVGVRYDS
                     AKKRASYDNIQYCGSVWTCPDCSKKVSLAKKELVAKAVTSANAKGMHVAMLTLTIPHYL
                     GDDLKDLLSKMKKAKNYLFTNRNSREWFADQFPVVGEITATEVKYSDRNGFHPHLHILL
                     FLDREYQKEDIERIEDEIYEFWAEKCVKRGLGKPSRKYGVDLKMEKTGEQTYASYIAKW
                     GLASELTQSHMKIGKKNMSSLTMWEVLDLAQMEVSTSDKYSRIFRTYAKAFKGARQIRP
                     SNGLLELLGLKNLEEDEDLANQKEDESSQVYDALALSSQDWWTICYHKKRVDFLELVES
                     DFEKNGIQTDLKSVKDFLFGLKNASRFSRGRGEKSPPLME"
                     /name="protein rep"
     gene            1234..2928
                     /gene="mobV"
                     /locus_tag="SOI78_RS19275"
                     /old_locus_tag="SOI78_19275"
     CDS             1234..2928
                     /gene="mobV"
                     /locus_tag="SOI78_RS19275"
                     /old_locus_tag="SOI78_19275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016653420.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_068521722.1"
                     /translation="MSYAILRTEKLKTIGNIAASLSHNYRNRPTPNADPYRTVNNEHDL
                     KTAGQVMDRVKNRLPEKTRSNAVLCVEYLITMSPDWSGLGTEKEADFFKRSIEWLKQRH
                     GAENVISTSIHRDETTPHLVAYVVPIDSQGKLNAREFLGGRAKLSKMQTDFHDQVKDLG
                     LERGLEGSKAEHTTIKDFYAEIQKPDNEKYLIQKPALKTITYNDSTIHMLDGKPLKDEK
                     LQKYFGSLFDEQHEYYQKQSLKAQESLSVKLSEQIIKTEKEAEAHRNAVKQIKKLEKKI
                     DKMLDEFSQVIEFKKLFPNDYKEIEQSLKDRIQDHKNQLIRKREEDARFEAQLRAHREQ
                     LAKEQERQQAIEFRKVLENDRRTQIEADRAHLWDKVGECTTEPEKLAYNAIQSKLEGVI
                     REGANYTALLDNNEPTTNPYAEILRLMNDREVYDFKKKLEIILNQCADSKSKDYDDTFR
                     SWGTRPSYYDNFDSSAKYIVAIQSIIDDQVQEGGVWAYEKANEVKRALSDVLVGKCKNE
                     YDVLLIDEKSKERQSKYNESVELSNKNQLDSGVYFEEQKKKGNDFEM"
                     /name="mobV"
     gene            3006..3377
                     /locus_tag="SOI78_RS19280"
                     /old_locus_tag="SOI78_19280"
     CDS             3006..3377
                     /locus_tag="SOI78_RS19280"
                     /old_locus_tag="SOI78_19280"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_068521724.1"
                     /translation="MLELKISNMYIDSYVDFQKQNFDSTLLEIKPIHQDNHGMAFDSAL
                     LDAVAQISDASTSVAINLFSSWLITQAEKNNMTPSFRLNGRKLLEEELKSKELLNKILE
                     EELKTIKLRKKIEKEKEKK"
                     /name="hypothetical protein"
ORIGIN
        1 taaaagagaa agctgggcag atcctctata ccccgaatgc agaaaaacag gaatttcgtg
       61 tctgttactg tggcaagttg cgtatttctg aaaaaatgcc ggttggtgtt cgttatgact
      121 ctgctaaaaa acgggcgagc tatgacaata ttcaatattg tggcagcgtt tggacgtgtc
      181 cggattgctc aaaaaaagtg agtttggcaa aaaaagaatt agtggctaaa gcggtaactt
      241 cagctaacgc aaaaggtatg catgtagcaa tgctgacgct gactattcct cactatcttg
      301 gtgatgatct gaaagactta ttgagcaaga tgaaaaaggc taaaaattac ttgttcacaa
      361 atagaaatag tcgggaatgg tttgcagacc agttccctgt agtcggtgag atcacggcaa
      421 cagaggtcaa atattcagat agaaatggct ttcaccctca cctgcatata ctgctgtttt
      481 tagatcgtga atatcagaaa gaagatatag aaagaattga ggatgagatt tacgaattct
      541 gggctgagaa gtgtgtcaaa cgtgggcttg gaaagcctag tcgtaaatat ggtgtagacc
      601 tgaaaatgga aaaaacaggt gagcagacct acgcaagtta tattgcaaaa tggggcttgg
      661 cttccgagct gacccaatca catatgaaga tcggcaaaaa aaatatgtcc agtttgacta
      721 tgtgggaagt actggattta gcacaaatgg aagtgagtac atctgataaa tacagccgaa
      781 tttttaggac atatgccaag gcattcaaag gcgcaagaca gattcggcca agtaatggtt
      841 tacttgaatt attaggttta aaaaatttag aagaagatga agatttggca aatcaaaaag
      901 aagatgaatc tagccaggtt tatgatgcat tggctttaag ttcacaagac tggtggacta
      961 tttgttatca caaaaaacgt gtcgattttc ttgaactcgt ggaatccgat tttgaaaaaa
     1021 atgggattca gaccgactta aaatccgtga aggattttct gttcgggctt aaaaacgcat
     1081 cgcgtttttc gaggggtcga ggggagaaat ctcccccgct catggaataa tttgaaaacg
     1141 tagttttaaa attgtgtagt gagtacacat tccgcttcgc taatgttttt ccctgtggca
     1201 cactggggga aaactagcga taggatgtgt tttatgagtt atgcaattct tcgaacagaa
     1261 aaactgaaaa caatcggcaa tattgctgct tctttgagcc ataactatcg caatagacca
     1321 actcctaatg ctgacccata ccgcactgtt aataatgaac atgatttaaa aacagcagga
     1381 caggtgatgg atagggttaa aaatcgactt cctgaaaaaa cgcgttcaaa tgcggttttg
     1441 tgtgttgaat atttaataac aatgtctcca gattggtcgg gattagggac agaaaaagaa
     1501 gcggatttct tcaaaagatc gattgaatgg ttaaaacaaa ggcatggtgc tgaaaatgtt
     1561 attagtacgt cgatccaccg tgatgaaact accccgcacc ttgtcgcata cgttgttcct
     1621 attgattcac aggggaaatt gaacgctagg gaatttttag gcggcagggc aaaattatca
     1681 aaaatgcaga ctgattttca tgaccaagtg aaagatttag ggcttgaaag agggcttgag
     1741 ggatcaaagg cagaacatac gacaattaaa gatttttatg ctgaaattca aaagcctgat
     1801 aatgaaaaat atttaattca aaaaccagca ttaaaaacaa ttacttataa tgattctaca
     1861 attcatatgt tggatggaaa acctttaaaa gatgagaagt tgcagaagta ttttggaagt
     1921 ctttttgatg agcagcatga atactatcaa aagcagtctt taaaagccca agaatcccta
     1981 tctgtaaagc tttcagagca aattattaag acagagaaag aagcagaagc ccatagaaat
     2041 gcagtaaaac agataaaaaa attagaaaaa aagattgata aaatgcttga tgaattttct
     2101 caagttattg aatttaaaaa gctttttcca aatgattaca aggaaataga acagagctta
     2161 aaagatcgaa tacaagatca taaaaatcaa ttgattagaa aaagggaaga ggatgcacga
     2221 tttgaagcgc aattaagggc gcaccgtgaa cagttagcaa aagagcagga gcgacaacag
     2281 gcaatagaat ttaggaaggt actggaaaat gatcgtagaa cgcaaataga ggctgataga
     2341 gcgcatttat gggataaagt aggcgaatgt accactgagc ctgaaaaact ggcttataac
     2401 gcaatacaga gcaaattaga gggtgttatc agagaggggg ctaactatac tgctttgctt
     2461 gataataatg agcctacaac taacccatat gctgagatac ttaggctaat gaatgataga
     2521 gaagtatatg attttaaaaa gaaattagaa attatattaa atcaatgtgc agattctaag
     2581 agtaaagatt atgacgatac ttttaggagt tggggaacaa gaccaagtta ctatgataat
     2641 tttgattcat ctgcaaaata tattgttgca attcaaagta ttatagatga tcaagtgcaa
     2701 gagggtggtg tatgggctta tgaaaaagcg aatgaggtaa aacgtgcttt aagtgatgtg
     2761 ttggttggta agtgtaaaaa tgaatatgac gtacttttaa ttgatgagaa gtcaaaagaa
     2821 agacagagta aatataatga atctgtcgaa ctatctaata aaaatcaatt agatagtggt
     2881 gtatattttg aagagcaaaa gaaaaagggt aatgattttg agatgtaggt tttaattaat
     2941 agagatactt attatggagt tataataata tttctataaa ttattaattt tgaagggata
     3001 agtaaatgtt agaactaaaa atttcaaata tgtatattga ttcttatgtt gattttcaga
     3061 agcaaaattt tgatagcact ttattagaaa tcaaaccaat acatcaagat aatcatggga
     3121 tggcttttga tagtgcattg ttagatgcgg ttgctcaaat tagtgatgcc agtacatcag
     3181 ttgctataaa tcttttttct agctggctga ttactcaagc agaaaaaaat aatatgacac
     3241 cttcatttag gctgaatggt agaaagttac ttgaggaaga gttgaagagt aaggaactgc
     3301 ttaataaaat tcttgaagag gaattaaaga caataaagct aagaaagaaa atagaaaaag
     3361 aaaaagaaaa aaaatagatg tgtaatcgaa attttaggtg aacgagtgtc tacgagtggc
     3421 acaaacttca tccgatttaa gatgtttttt ccctgattac aagctccctt ttgatttcaa
     3481 acgggagtaa cagagcatcc caacgggtgc gaacaactta gaaaacaatg gcttagagat
     3541 ttgattagaa taaatattta gtgtaatttt tactttaaaa tcagctattt gaataacaga
     3601 aatatttaag ttatattact tttagttttt tacagaccaa aaaaaagccc catatcttgg
     3661 cggatcaggc ttttgattgg ctactttcag cggcttgagg tgctgatttc acaatgtata
     3721 cggatagtat aaaggtgatt tcctccccca tcaagcctga atataggctt gagaatgcaa
     3781 aacagacaaa accctcaaaa aacaacatct ttcattaaaa gcgctcctgc gctatctgct
     3841 gtcgtccctg catctcgaaa aaatcgcctt ggaacaatta ctaaattctg ttccaaccag
     3901 tcacagcaag gcttacagca agacgatacc cagtacaaag aatacagaaa acaaaccgag
     3961 cagt
//
