LOCUS       NZ_CP139280             4741 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Acinetobacter pittii strain AN37 plasmid pApiAN37b, complete
            sequence.
ACCESSION   NZ_CP139280
VERSION     NZ_CP139280.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38315705
            Assembly: GCF_034072545.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter pittii
  ORGANISM  Acinetobacter pittii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 4741)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S., Guerrero,G., Garza-Gonzalez,E.,
            Lozano-Zarain,P., Volkow,P., Morfin-Otero,Md.R. and Cevallos,M.A.
  TITLE     Acinetobacter pittii: intercontinental dissemination, pathogenetic
            potential, and antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4741)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S. and Miguel,C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2023) Programa de Genomica Evolutiva, Centro de
            Ciencias Genomicas, Av. Universidad s/n, Col Chamilpa, Cuernavaca,
            Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2022
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: AN37_genome
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 11242x
            Sequencing Technology :: DNBseq; Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 00:32:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,856
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,675
            CDSs (with protein)               :: 3,675
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 40 of 86
            Pseudo Genes (incomplete)         :: 35 of 86
            Pseudo Genes (internal stop)      :: 23 of 86
            Pseudo Genes (multiple problems)  :: 10 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139280.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4741
                     /organism="Acinetobacter pittii"
                     /mol_type="genomic DNA"
                     /strain="AN37"
                     /isolation_source="Peritoneal Dialysis Fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:48296"
                     /plasmid="pApiAN37b"
                     /geo_loc_name="Mexico:Puebla, Puebla"
                     /lat_lon="19.0344 N 98.2447 W"
                     /collection_date="2014-11-17"
                     /collected_by="Hospital del nino Poblano"
     gene            complement(join(3066..4741,1..226))
                     /locus_tag="SOI78_RS19250"
                     /old_locus_tag="SOI78_19250"
     CDS             complement(join(3066..4741,1..226))
                     /locus_tag="SOI78_RS19250"
                     /old_locus_tag="SOI78_19250"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_320561149.1"
                     /translation="MIVQFFRYGNGLSKGPLDYLLGKDRDRDYAKVLQGDVSEVSGLID
                     TSPYAKKYTSGCLSFYEHDLSDQDKQKIMQDFEQALFPGMDQSQYRVLWIEHQDKLNEE
                     TGERRLELNFLIPNVEILTGQRLQPYYDKADRPRIDLFKKITNYEYQLHDADDPLYRQA
                     VTTAKNLPKTVNEIKETLDIEATRAVEGGLITDRQSMKKWLLDLGLEVTRETKKSLSIK
                     NPNDDEKARPIRLTGAIYEQDFRLTETSQQLTIAASERYRREAEQRNQSDIQRYAEYCA
                     KRSTELEQQYRQHQNGYTAETERSNERDIAADRPDYSSNQEAAATRHDSPIARTTTADQ
                     TATSELAAVERLEPRNSPSSQIKENPYYIEYSLDFTGMYNAYQQYLSGIRQQEQVQRHH
                     RDGEQSPVAKKPRGEPEYSEVWDREKMGLVRPDRPESAAVQQQYANSAGNQLNESRSTV
                     IADYRAATAAAQRATEAARASLAAHSGTEQNHRRIRELQQQTGEALQQVERERKRADQY
                     HQETTESEVIRGFITKLGEQLKTAITEPFRAISDWVKSKERDQGTIANDDLYRNREADS
                     TIDRTASKETRLSATVSRKIRGFDQTNIFKALDELDRRRELQLEQQRKNDRSYSPRF"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(223..669)
                     /locus_tag="SOI78_RS19255"
                     /old_locus_tag="SOI78_19255"
     CDS             complement(223..669)
                     /locus_tag="SOI78_RS19255"
                     /old_locus_tag="SOI78_19255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017482451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_306670357.1"
                     /translation="MERKDTWRPLCYADVFHDLVQGQAPETPKSKGKSMTAIKRNKVYK
                     VRFSDAEVQKIKDANILNIAKYLRDTSLAQIDATQGNAKKKNQENHYTKLDRDFLLELS
                     RIGGNINQIAKAINTDIASSRPLDAARLLHLLIGIDQTLKELKK"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(950..1813)
                     /locus_tag="SOI78_RS19260"
                     /old_locus_tag="SOI78_19260"
     CDS             complement(950..1813)
                     /locus_tag="SOI78_RS19260"
                     /old_locus_tag="SOI78_19260"
                     /inference="COORDINATES: protein motif:HMM:NF022633.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2971 domain-containing protein"
                     /protein_id="WP_320561150.1"
                     /translation="MSLQDLKVTKNISKDTMLWRYMTLDKLINLLSTEALYFASLYQYE
                     STDPFEGVLPKVAMKAMRDMYLSQYQALLSQANQLRDMFLKVNTGKPEQLAAIDGIDKL
                     IKDTEDNFLSSLDMVSFRIFKSTLVNCWHQNEFESEAMWRLYSENNKGIAIQTTFQNLV
                     DSIDDQRIFLSEVKYMNFHDENLEPKDCVVNGYLGPLLKRKSFEHEKEVRLFFQPENDL
                     EMLSAKEFSYKGQSFKVDISKLISKIYISPYADDLFANSVKEVLVRFGINNSQIIHSDL
                     LKKPTY"
                     /name="DUF2971 domain-containing protein"
     gene            complement(1834..2778)
                     /locus_tag="SOI78_RS19265"
                     /old_locus_tag="SOI78_19265"
     CDS             complement(1834..2778)
                     /locus_tag="SOI78_RS19265"
                     /old_locus_tag="SOI78_19265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005402006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_320561151.1"
                     /translation="MLNKTQFSDDFYEKLPKKPYCSDDLGRGVIIRPKRTAIQKPYIQH
                     NPPCLVSSLVFDIDRPDAYFAWSDANLPTPTWIAKNRQNGHAHIGYMLLAPVCTTHRAK
                     QNVIQYLAKIEQAYSLALGADRGYTGLITKNPCHGTWENHTFGVQPYELNYLADFVELQ
                     ELKTDLKEVLGLGRNCMMFDTVRYWAYKAIRAYRGSTFDIWLGKVLEQCQNANGAFIEP
                     LPYSEVKATAKSIARYCWKKDGYHYQEFIDRQSRKGRLGGMKSNSSNGGLARAKKFDEQ
                     KKKAQELKKRGLKNTEISKQLGVTTRTLRNWFS"
                     /name="replication initiation protein"
     Typing          complement(3073..4739)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.998"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cctgcatgat tttttgttta tcctggtcag ataaatcatg ctcataaaaa cttaggcagc
       61 cggatgtata tttttttgca taaggtgacg tatcaattaa tcctgatact tcggaaacat
      121 cgccctgtag gacttttgca taatctcgat cacggtcttt accaagtaaa taatccagtg
      181 gacctttact taaaccattc ccatatctaa agaattgaac aatcattttt tcaattcctt
      241 taaggtctga tcaatcccta ttaacaggtg caaaagcctt gcagcatcaa ggggacgact
      301 gcttgcaata tcagtattta ttgcctttgc aatctgattg atgttgcccc caattcggga
      361 tagctcaagc aaaaagtcac ggtctaattt tgtgtagtgg ttttcctgat tctttttttt
      421 ggcgttgcct tgggttgcat caatttgggc aagcgaagta tcccttagat atttggcaat
      481 atttaggata ttggcatctt tgattttctg tacctctgca tcagaaaatc ggactttgta
      541 aaccttatta cgtttgatcg ctgtcatgct tttgcctttg cttttggggg tttcgggggc
      601 ttgcccctga acaaggtcat ggaacacatc tgcgtagcag aggggtctcc atgtatcctt
      661 gcgttccatt acgatagcag acccctagaa gtaattcaat tgagcaggtc atagcaagac
      721 tatggacaat cgcaagcgac cgtaaaacct gatctgtgcc taaacactat gcacaactcc
      781 gcataacgat aaagccgtta tacgttgagt tgcacacagg tttagatcac agggttttcc
      841 tttccccaca gccattgcac attcccttaa ataataattt ttaaaaatga gaaaataaaa
      901 aaagccccaa gaagggctgt tatctgattt aggcttgcac tttccgcttt tagtaagtag
      961 gtttttttaa taaatcggaa tgaatgattt gactattatt gattccaaac cttactaaga
     1021 cctccttaac gctgttagcg aacagatcgt ctgcataagg tgatatatat atttttgata
     1081 ttaatttaga tatatctacc ttaaaagatt gccctttata actaaactcc tttgcagaaa
     1141 gcatttctaa atcattttca ggctgaaaga aaagtcttac ttctttttcg tgctcaaagg
     1201 atttcctttt caaaagaggg cctaaataac catttacaac acaatcttta ggttctaaat
     1261 tttcatcatg aaagttcata tatttaactt ctgatagaaa tattctttga tcatcaatac
     1321 tatctaccaa attctggaat gtagtttgaa tagctatacc tttattattt tcagaataca
     1381 atctccacat tgcttcagat tcaaactcat tttgatgcca acaattaact aaagttgatt
     1441 taaatattct gaaagaaacc atatcaagcg aagataaaaa attatcttca gtgtctttaa
     1501 ttaatttatc aataccgtca attgcagcta actgttctgg ttttcctgta tttactttaa
     1561 gaaacatatc tctaagctga tttgcctgac ttaataaagc ttggtattgc gataagtaca
     1621 tatctctcat agctttcatt gcaactttag gtaaaactcc ttcaaatgga tcagtacttt
     1681 catattgata taatgatgca aagtaaagag cttctgtact caaaagattt attaatttat
     1741 ctagggtcat atacctccaa agcattgtat ctttagatat attttttgtg acttttaaat
     1801 cttgtaacga catactcttg acctatttta ttttcaacta aaccaatttc ttaatgttct
     1861 agtcgtaaca cctaactgtt ttgaaatttc agtatttttt agccctcttt tttttaattc
     1921 ttgagctttt ttcttttgct catcaaattt ctttgctctg gctaacccac cattggaaga
     1981 attacttttc attccaccta atcggccttt tcggctttga cgatctataa actcttgata
     2041 gtgatagccg tctttcttcc aacaatatcg agcaatagat tttgcagtag ctttgacttc
     2101 gctatatggc aatggctcta taaacgcacc atttgcgttc tgacactgtt ctaggacttt
     2161 ccctagccaa atatcaaatg tactgcctcg atacgctcta atcgccttat acgcccaata
     2221 tctgactgta tcgaacatca tgcagttacg cccaagccct aaaacctctt ttaagtcggt
     2281 ttttagttcc tgaagctcta caaaatcggc taaataattg agttcgtatg gttgaacgcc
     2341 aaaggtatga ttttcccatg ttccatgaca tggattttta gtgattaagc ccgtatagcc
     2401 acgatctgca cctaacgcca agctatacgc ctgctcgatc ttggcaaggt actgtatgac
     2461 attctgcttt gctcgatgcg tggtacacac tggagctaaa agcatatagc caatatgtgc
     2521 atgtccattt tggcgatttt tggctatcca tgttggggtc ggtaaatttg cgtcagacca
     2581 tgcgaaataa gcgtctggtc gatctatatc gaacaccaac gagctaacaa gacaaggggg
     2641 attatgctga atgtatggct tctggattgc ggtacgtttt gggcgaataa tcaccccacg
     2701 ccctaaatca tccgagcaat acggtttttt tggaagtttt tcgtaaaaat cgtctgaaaa
     2761 ttgcgtttta ttgagcatga aacacgtcca agtgttgcat tggctcaaaa catcagtaaa
     2821 atactagtaa cgaattagcg ttttatggat gctttaagca tttgtttaac aaagagaaaa
     2881 aagcaagcct gccagcttgc ttttttttcg cctgatgaaa atattacacc tttttgaatt
     2941 gctgtcaaat gactgatttt caaaacaaaa tattgcgaca atttgtcgca aatacgcgcc
     3001 ctttggagat gctttttttt cgaggacagc attgcaaggg caatgctccg cagacaaaaa
     3061 aagtatcaaa atctaggtga ataactcctg tcatttttac gttgttgctc cagttgcaac
     3121 tctctacgtc tgtccagctc atctaaagcc ttgaagatat ttgtttgatc aaaccctcga
     3181 atctttcgtg atactgttgc actgagtcga gtttcctttg aagctgttcg gtcaatggtg
     3241 ctgtctgctt ctcgatttct gtatagatca tcgttggcaa tagttccttg atctcgttct
     3301 ttagatttaa cccagtcact aattgctcta aatggctctg taatcgctgt tttaagctgc
     3361 tctccaagtt ttgtaataaa tcctctgata acttcggatt ctgtagtttc ttgatgatat
     3421 tgatcagctc gctttctttc tcgttcaact tgttgcagtg cttcaccagt ttgctgttgt
     3481 agttctctaa ttcgtctatg gttctgttct gtgcctgaat gagctgcaag gcttgctctt
     3541 gctgcttctg ttgctctttg agctgctgct gttgctgctc gataatctgc aataactgtg
     3601 cttcgagatt catttaattg gtttcctgca ctattcgcat attgttgctg tactgctgcg
     3661 ctttcgggtc gatctggacg caccagtccc attttttctc tgtcccacac ttctgaatat
     3721 tcaggctcgc cccttggctt tttagccact ggactttgtt ctccatctct gtgatgtcgc
     3781 tgtacttgct cttgctgacg tatcccagac aaatactgct gataagcgtt atacatgcca
     3841 gtgaaatcaa ggctatattc gatgtaataa gggttttctt taatttggct gcttgggctg
     3901 tttcttggct caagccgttc aactgctgca agttcgcttg tagctgtttg atctgctgtt
     3961 gttgttcttg caatagggct atcatgcctt gttgctgctg cttcttgatt tgagctgtag
     4021 tctggtcgat ctgctgcaat atctcgttcg ttgcttcgct ctgtttctgc tgtatatccg
     4081 ttttggtgct gtcgatactg ctgctcaagc tctgtgcttc gctttgcaca gtattccgca
     4141 tatctttgaa tatctgactg atttcgctgt tcagcttctc gtctatatcg ttctgatgct
     4201 gcgatagtaa gttgttggct cgtttctgta agtctaaaat cttgctcata gattgcacct
     4261 gtaagcctta tcgggcgggc tttttcgtca tcattcggat tcttaatgga taggcttttc
     4321 ttggtttctc tggtgacttc aagaccaaga tccaatagcc attttttcat gctctgccga
     4381 tctgtaatta gtccaccttc aacggctctc gttgcttcaa tatcaagcgt ttccttgatt
     4441 tcattaacag ttttaggcaa gttttttgcc gttgtaacgg cttggcgata gagggggtca
     4501 tctgcatcat gcagttgata ttcatagttt gtaatcttct taaacagatc aatacgagga
     4561 cgatcagctt tatcataata aggctgtaaa cgttgccctg taaggatttc aacattaggg
     4621 attaggaagt taagctctaa tcttcgctcc cctgtttctt cgtttaattt gtcttgatgc
     4681 tcaatccaca agacacggta ctggctctga tccatgccag ggaataaggc ttgctcaaaa
     4741 t
//
