LOCUS       NZ_CP139279             5061 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Acinetobacter pittii strain AN37 plasmid pApiAN37c, complete
            sequence.
ACCESSION   NZ_CP139279
VERSION     NZ_CP139279.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38315705
            Assembly: GCF_034072545.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter pittii
  ORGANISM  Acinetobacter pittii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5061)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S., Guerrero,G., Garza-Gonzalez,E.,
            Lozano-Zarain,P., Volkow,P., Morfin-Otero,Md.R. and Cevallos,M.A.
  TITLE     Acinetobacter pittii: intercontinental dissemination, pathogenetic
            potential, and antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5061)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S. and Miguel,C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2023) Programa de Genomica Evolutiva, Centro de
            Ciencias Genomicas, Av. Universidad s/n, Col Chamilpa, Cuernavaca,
            Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2022
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: AN37_genome
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 11242x
            Sequencing Technology :: DNBseq; Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 00:32:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,856
            CDSs (total)                      :: 3,761
            Genes (coding)                    :: 3,675
            CDSs (with protein)               :: 3,675
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 40 of 86
            Pseudo Genes (incomplete)         :: 35 of 86
            Pseudo Genes (internal stop)      :: 23 of 86
            Pseudo Genes (multiple problems)  :: 10 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139279.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5061
                     /organism="Acinetobacter pittii"
                     /mol_type="genomic DNA"
                     /strain="AN37"
                     /isolation_source="Peritoneal Dialysis Fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:48296"
                     /plasmid="pApiAN37c"
                     /geo_loc_name="Mexico:Puebla, Puebla"
                     /lat_lon="19.0344 N 98.2447 W"
                     /collection_date="2014-11-17"
                     /collected_by="Hospital del nino Poblano"
     gene            1..924
                     /gene="repM"
                     /locus_tag="SOI78_RS19215"
                     /old_locus_tag="SOI78_19215"
     CDS             1..924
                     /gene="repM"
                     /locus_tag="SOI78_RS19215"
                     /old_locus_tag="SOI78_19215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004282204.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_004698334.1"
                     /translation="MKTELIVKDNALINASYNLDLVEQRLILLAIVEARESGKGINAND
                     PLTVHAESYINQFGVHRNTAYQALKDACDDLFARQFSYQSLSEKGNIINHKSRWVSEVA
                     YIDNEAVVRLIFAPAIVPLITRLEEQFTKYEIQQISNLTSAYAVRLYEILIAWRSTGKT
                     PLITLSDFRQKIGVLDTEYKRMYDFKKYVLDIALKQVNEHTDITVKVEQHKTGRSITGF
                     SFSFKQKKSVTKSAKSIGVSEDITITLTDAQRYSFASKLSELPEMGKLSQGTETYEQFA
                     VRIADMLKQPEKLKELTPLLRKVGFQ"
                     /name="repM"
     gene            992..1537
                     /locus_tag="SOI78_RS19220"
                     /old_locus_tag="SOI78_19220"
     CDS             992..1537
                     /locus_tag="SOI78_RS19220"
                     /old_locus_tag="SOI78_19220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004786457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication DNA-binding protein"
                     /protein_id="WP_000736774.1"
                     /translation="MKKLSVSELAKLYGYSRQAIYAHINKGNLSKGSDGLIDFAEAIRV
                     FGEPQKKDTNVNQSQSINSQNLTEVDLLKRQVDILEKQLNQALFRENQSLERESFYQDQ
                     IEAMQRLLEAPKANMTTFTDQEQSQANVAQVQPEPNIDAPKHDGLTTPENKRIPVPEHV
                     EPEPKKRGFWSRFFLPYG"
                     /name="plasmid replication DNA-binding protein"
     gene            complement(1734..1994)
                     /locus_tag="SOI78_RS19225"
                     /old_locus_tag="SOI78_19225"
     CDS             complement(1734..1994)
                     /locus_tag="SOI78_RS19225"
                     /old_locus_tag="SOI78_19225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004698336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004698336.1"
                     /translation="MSVTVTQQKDIDKVLKKYPDCCSICKDHFDDEDLTYTVFGYDKNQ
                     RMQVVSGCCIDAISDIVLLGLCGCYDPNDIQNLMKEHPLVD"
                     /name="hypothetical protein"
     gene            2161..2481
                     /locus_tag="SOI78_RS19230"
                     /old_locus_tag="SOI78_19230"
     CDS             2161..2481
                     /locus_tag="SOI78_RS19230"
                     /old_locus_tag="SOI78_19230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000897307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_004698338.1"
                     /translation="MLFIETSIFTKQIKDLVSDEEYRQLQEDLLVQPDRGDLIKNGGGI
                     RKVRCAQGNKGKSGGIRVIYYWVTEDDQIFFLLAYPKSVKDNLTDKETAILRQLVKEQF
                     HG"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            2474..2746
                     /gene="nadS"
                     /locus_tag="SOI78_RS19235"
                     /old_locus_tag="SOI78_19235"
     CDS             2474..2746
                     /gene="nadS"
                     /locus_tag="SOI78_RS19235"
                     /old_locus_tag="SOI78_19235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000369784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NadS family protein"
                     /protein_id="WP_000369781.1"
                     /translation="MDNNLFDDLVASIKEAGAIKRKEVKASRVTELELPDIKEVREKTG
                     LSQNEFAARLHISPRTLQNWEQGRRYPTGPAATLIRILDAHPSLI"
                     /name="nadS"
     gene            3068..3397
                     /locus_tag="SOI78_RS19240"
                     /old_locus_tag="SOI78_19240"
     CDS             3068..3397
                     /locus_tag="SOI78_RS19240"
                     /old_locus_tag="SOI78_19240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000610966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-helix bundle copper-binding protein"
                     /protein_id="WP_000610966.1"
                     /translation="MINTEFSECISACTNCSLICTECATSCLKEKDLEMMRECIQRCLE
                     CADICQLCVRMQQHNSPFLKEICELCAKICEYCAEECEKHSHDYCKKCAEACRQCAEEC
                     RKIAM"
                     /name="four-helix bundle copper-binding protein"
     gene            complement(3503..3694)
                     /locus_tag="SOI78_RS19245"
                     /old_locus_tag="SOI78_19245"
     CDS             complement(3503..3694)
                     /locus_tag="SOI78_RS19245"
                     /old_locus_tag="SOI78_19245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004706315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004706315.1"
                     /translation="MSTELVNSANIISFPKPCAFCESREHVQLFAGLMLCRSCQENIKI
                     TNPDLFATNDQIQQKAQD"
                     /name="hypothetical protein"
     Typing          2..605
                     /name="rep_cluster_1254"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.67"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgaaaacag aactaatagt taaagataat gcattaatta atgccagtta taaccttgat
       61 ctagtcgagc aacggttaat tcttctagct atcgttgaag caagggaatc gggtaaggga
      121 ataaatgcta atgatccatt aacagttcat gctgaaagct acatcaatca atttggtgta
      181 caccgaaaca cggcttatca ggcattaaaa gatgcttgtg atgatctatt tgcaagacaa
      241 ttcagttatc aaagtcttag tgaaaaaggc aacattatta atcacaagtc aagatgggtg
      301 agtgaagtcg cttatattga taatgaagcg gttgttagac ttatttttgc tcccgctatc
      361 gtgcctttaa ttacaagact agaagaacaa tttacaaagt atgaaataca acaaataagc
      421 aatttaacaa gtgcttatgc cgttcggtta tatgagatat tgattgcatg gcgtagtaca
      481 ggaaaaacgc ctcttataac tttgtctgat ttcagacaaa aaataggtgt actcgatact
      541 gaatacaaac gaatgtatga ctttaaaaaa tatgtcttag acattgcatt aaagcaagta
      601 aatgaacata ccgacattac tgttaaagtt gaacagcata agactggtag atcaattaca
      661 ggtttttcat ttagctttaa acaaaaaaaa tcagtaacga agtcagctaa aagtataggt
      721 gtaagcgaag atataacgat cactttaaca gatgcacaac gctattcatt tgcgagtaaa
      781 ttgtcagagc ttccagaaat gggaaaactt tcacaaggca ccgaaaccta tgaacaattt
      841 gctgtacgga ttgcagatat gctaaaacag ccggagaaat taaaagaact tactccatta
      901 cttcgaaaag ttggctttca ataaatgatg tcaattgaca ttgtaaagtt gacagtcaag
      961 tattaacaca aattgaaaac tagtttacat aatgaaaaaa ctgtcagttt cagagttggc
     1021 taagctttac ggatattcac gacaagccat atatgcgcat ataaacaaag gaaatttatc
     1081 taaaggatct gatggattaa ttgacttcgc agaagccata agagtttttg gggaaccaca
     1141 aaagaaagat actaatgtca atcaaagtca atcaattaac agtcaaaact tgacagaagt
     1201 tgacctatta aaacgtcaag ttgacatact ggaaaaacag ttaaatcaag cactgtttag
     1261 agaaaatcaa tcactagaac gtgaatcgtt ttatcaagat cagatcgagg ccatgcagcg
     1321 cttactagaa gcaccaaaag ccaatatgac tacgtttacc gatcaagaac agtcgcaagc
     1381 gaatgtagct caagtacagc cagaacctaa tattgatgct cctaaacatg acggattgac
     1441 tactccagag aataagcgca ttcctgttcc agagcatgtt gaaccagagc ctaaaaagcg
     1501 tggcttctgg agtcgttttt ttcttccata tggttaactt aggctaaata aaaccgtgga
     1561 acattgctca ataaataagc gtggaacgtg aaaaatcata aaaaaaaccc accttgggga
     1621 agatgggcta taaactagaa actacagcat tgatttctat agataattat aacgcatttc
     1681 ggataaggtg tattatgtta attttagaaa atcttcaacc tcaccttaaa gaattaatct
     1741 actagaggat gctctttcat taaattctgt atgtcatttg ggtcataaca accacataag
     1801 cctagaagaa ctatgtcgga tatagcatca atacaacaac ctgaaacgac ttgcatacgt
     1861 tgatttttgt catatccaaa aactgtatat gtcaaatctt catcatcaaa atgatcttta
     1921 cagattgaac agcaatcagg gtatttcttc aaaaccttat caatatcctt ttgctgagta
     1981 acagtaacgc tcatataaca actcaaataa cttttcttgg tcataatttt acatctatat
     2041 ttttctgaat atccttttat ttagcatgat gggcgttatt tggaacgaga gcggacaact
     2101 ctcgtttttt gttatggaaa ctgctaaaat acaagtacgc cattgacgta taaagagtcc
     2161 atgttattta ttgaaaccag catctttacc aagcaaatta aagaccttgt atctgatgag
     2221 gaatatcgtc aacttcagga agatcttttg gtacagcctg atagaggtga tctaatcaag
     2281 aatggcggtg gtattcgcaa agtacgttgt gctcaaggta acaaaggaaa aagtggtggt
     2341 attcgggtga tttattattg ggtcaccgag gatgatcaga tatttttctt attggcttat
     2401 ccaaaatcag tgaaagataa tttaacagat aaggaaacag ccattctgcg ccaactcgtg
     2461 aaggagcaat ttcatggata acaacttatt tgatgacttg gttgcttcaa tcaaagaagc
     2521 tggagctatc aaacgtaaag aagttaaagc aagtcgagtt acagaactcg aactaccaga
     2581 tattaaagaa gtacgtgaaa aaacaggctt gagccaaaat gagtttgctg cacgtctgca
     2641 tattagtcct cgtaccctgc aaaattggga acaaggtcga cgctatccaa ctggaccagc
     2701 agctacatta attcgaattt tagatgctca tccaagcctt atttgaaaaa attacttaaa
     2761 aaaatgggag cttagctccc atttttaaat tcgtataacg gccattatgt taaatagagg
     2821 gaaaatctat ttttaaagtg ataaaattat tgtagttatt ttaagaatag ctgcttttga
     2881 tacttgatca tctatcctaa ttaaaaactg ttttttaata atttggaata taaataagat
     2941 ttagttaaaa ttaaaattat tcatataaat taacattatg tattacattt actaataatt
     3001 taaaataatt agtagaaaaa aattatgttt taattatttc tttgattata taagttgaga
     3061 gtaaaaaatg attaatacgg aattttcaga gtgtatttct gcatgtacaa actgttcact
     3121 tatttgtact gaatgtgcaa cttcttgttt aaaagaaaaa gatttagaga tgatgcgtga
     3181 atgtattcaa cgttgtctag aatgtgcaga tatttgtcag ttatgtgtgc gtatgcaaca
     3241 acataactca cctttcctca aagagatttg tgagctttgt gctaagatct gtgaatattg
     3301 tgcggaagag tgtgaaaaac attcacatga ttattgtaaa aaatgtgctg aggcttgccg
     3361 tcagtgtgca gaagaatgtc gaaaaattgc catgtaaaat acttcaataa tgttaattat
     3421 atggctctag actaacataa tcattctgct agtctagagc ctttcctaaa attaacataa
     3481 tacaccttat acgaagccca ggttaatcct gggctttttg ttgaatctga tcattggtag
     3541 caaacagatc aggattggta attttgatgt tttcctgaca actcctgcaa agcatcagcc
     3601 cagcaaaaag ttgtacatgt tcccttgatt cacagaaggc acatggctta ggaaaagaga
     3661 tgatattggc tgaattgact aattctgttg acataagaag taaccttgga ttgtacatat
     3721 ttatttttaa taaatttcaa tactttatac ctaatttagc cactaaaatt tgtacattat
     3781 tgtataatcc atgtgtacat attatttttt ataattttca ttcacttaga cccaaaatag
     3841 tatttatttt tgtacaacac catgtacaga acaataatca tataaatcaa atttttagca
     3901 taaaaaagtc cattaatttt gtacacaatt ctgaaactta aaaatctaaa ctttcatcaa
     3961 tttttttcat aatttcaata aattaacctt aattttaaga tatattctga aagttggttt
     4021 gaaagttgtt tttacattat atttcaatac tttaaatcaa aaaattggat attttttgaa
     4081 aaactcaatg aaagtttatt ttttatttaa aaacaactag ttatattagt ttttatccat
     4141 tttttttgaa acagtttcta tatgataaaa aaacctataa aaaccatatc tagcaaaggt
     4201 ttgagggtta tcatctttag atgcgtggtg tgtgacaaaa aaatcccggc atgtgccgga
     4261 ttctggatta gaaaattggc taaagtgacg taggactggt gcttggtttt acatggaaaa
     4321 aagtatttat tttctggttt ataaaaacgt aaaaagatca gtttttgttc attcatccag
     4381 gttaaaaatt tcaacctaaa actttaatta tgaaaagctt cacagaaagc attcaaatgc
     4441 gatttaagag cctttatcta aaaaacatag atctatagcg aaaaacagaa aacagctcaa
     4501 aaaacgcaaa agagagtgaa gtaaagagat gttttgactt tagatagctg catagagcga
     4561 gtgtctacga gcgaactatc aaaatttgcg cctagactct ctgaaaaaca tttttttgcc
     4621 ctctttagcc taagaaagct taagtttcat gcagaaattt gctcctggac cgagcgtagc
     4681 gagaaaaaag ctcatgagcg aagcgaattc cgagttgctt ttgctttttc ttaaagtcac
     4741 gcaagtatta accaaaaaat tgccccgacg aactgagcga aagcgaagtt caatagagtt
     4801 tgagcgaagc gaaaaccaag ggcaattttt tatgacctga gcttttaaat atttttaaat
     4861 cttttaaatg cttttagaca tgctgaaagc ctttatttat aaaattctta gagactataa
     4921 aacgaggttt accttgcatt aaaacgaggt ttaccttgca ttaaaacgag gtttaccttg
     4981 cattaaaacg aggtttacct tgcattaagc gagtttatga tatagcctcg tcttattgaa
     5041 ttaaaaatat aaccttttca t
//
