LOCUS       NZ_CP139274             5688 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Acinetobacter pittii strain HCG62 plasmid pApiHCG62a, complete
            sequence.
ACCESSION   NZ_CP139274
VERSION     NZ_CP139274.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38315707
            Assembly: GCF_034071845.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter pittii
  ORGANISM  Acinetobacter pittii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5688)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S., Guerrero,G., Garza-Gonzalez,E.,
            Lozano-Zarain,P., Volkow,P., Morfin-Otero,Md.R. and Cevallos,M.A.
  TITLE     Acinetobacter pittii: intercontinental dissemination, pathogenetic
            potential, and antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5688)
  AUTHORS   Bello-Lopez,E., Escobedo-Munoz,A.S. and Miguel,C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2023) Programa de Genomica Evolutiva, Centro de
            Ciencias Genomicas, Av. Universidad s/n, Col Chamilpa, Cuernavaca,
            Morelos 62210, Mexico
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAY-2022
            Assembly Method                   :: unicycler v. 0.4.8
            Assembly Name                     :: HCG62_genome
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1832x
            Sequencing Technology :: DNBseq; Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 00:41:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,047
            CDSs (total)                      :: 3,950
            Genes (coding)                    :: 3,791
            CDSs (with protein)               :: 3,791
            Genes (RNA)                       :: 97
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 55 of 159
            Pseudo Genes (incomplete)         :: 95 of 159
            Pseudo Genes (internal stop)      :: 34 of 159
            Pseudo Genes (multiple problems)  :: 22 of 159
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139274.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5688
                     /organism="Acinetobacter pittii"
                     /mol_type="genomic DNA"
                     /strain="HCG62"
                     /isolation_source="tracheal aspirate"
                     /host="Homo sapiens"
                     /db_xref="taxon:48296"
                     /plasmid="pApiHCG62a"
                     /geo_loc_name="Mexico: Jalisco, Guadalajara"
                     /lat_lon="20.6871 N 103.3438 W"
                     /collection_date="2018-11-29"
                     /collected_by="Hospital Civil de Guadalajara"
     gene            1..951
                     /gene="repM"
                     /locus_tag="SOI80_RS20190"
                     /old_locus_tag="SOI80_20195"
     CDS             1..951
                     /gene="repM"
                     /locus_tag="SOI80_RS20190"
                     /old_locus_tag="SOI80_20195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004786597.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_001208778.1"
                     /translation="MRELVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDP
                     LEVHAEGYINQFGVHRNTAYQALKDACNDLFARQFSYQKINERGNIENYRSRWVSEIGY
                     VDNEAVVKLIFAPAIVPLITRLEEHFTKYELQQVSNLSSAYAVRLYELLIAWRSTGSTP
                     VIELSDFRQRIGVLDTEYKRMERFKTSVLELAIKQINEHTDITVKYEQHKRGRSISGFS
                     FTFKQKKKDNPPIERDPNTLDLFTKMTDAQRHMFANKLSELPEMGRYSQGTESYPQFAV
                     RIAEMLQDPDRIKELYPYLKKVGYMPSNKKDTVNG"
                     /name="repM"
     gene            944..1519
                     /locus_tag="SOI80_RS20195"
                     /old_locus_tag="SOI80_20200"
     CDS             944..1519
                     /locus_tag="SOI80_RS20195"
                     /old_locus_tag="SOI80_20200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005102333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication DNA-binding protein"
                     /protein_id="WP_017725651.1"
                     /translation="MAKLSLSEVSKKFHVDRSTIYRAVRNGRLSRSSDGQFDLAEVIRC
                     FGEPEQTSQKIESSRQEGDESTKKLIAHLENEVKKYQEREERLMQQIDRMQTLIELKSV
                     APATALPQQDATACDTDMPQHATTQQDNDNKKNNEFNIAENVAVPQQETTAYHTQTLQH
                     ATLQNVAVPQHKKRGLFGRVLNAVFDHD"
                     /name="plasmid replication DNA-binding protein"
     gene            1540..1683
                     /locus_tag="SOI80_RS20200"
                     /old_locus_tag="SOI80_20205"
     CDS             1540..1683
                     /locus_tag="SOI80_RS20200"
                     /old_locus_tag="SOI80_20205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004786602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004786602.1"
                     /translation="MPKLKDIALGIIVAPLLIPIMLVASYQDKKALKKELNERQKEKDQ
                     AS"
                     /name="hypothetical protein"
     gene            2028..2345
                     /locus_tag="SOI80_RS20205"
                     /old_locus_tag="SOI80_20210"
     CDS             2028..2345
                     /locus_tag="SOI80_RS20205"
                     /old_locus_tag="SOI80_20210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005065053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032023430.1"
                     /translation="MLGKNHHFLKKFSISDAAIAYKKPRSTILKYIKSGDFELDYNKLI
                     EYSQLVRKFGELTYPIQDEREQQIKELKDEVMHLKKQLNFFKYTSISNKNRLLISHKHS
                     I"
                     /name="hypothetical protein"
     gene            complement(2820..3092)
                     /gene="nadS"
                     /locus_tag="SOI80_RS20210"
                     /old_locus_tag="SOI80_20215"
     CDS             complement(2820..3092)
                     /gene="nadS"
                     /locus_tag="SOI80_RS20210"
                     /old_locus_tag="SOI80_20215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000369784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NadS family protein"
                     /protein_id="WP_000369780.1"
                     /translation="MDNNLFDDLVASIKEAGAIKRKEIKASRVTELELPDIKEVREKTG
                     LTQAEFAARLHISARTLQNWEQGRRYPTGPAATLIRILDAHPTLI"
                     /name="nadS"
     gene            complement(3085..3405)
                     /locus_tag="SOI80_RS20215"
                     /old_locus_tag="SOI80_20220"
     CDS             complement(3085..3405)
                     /locus_tag="SOI80_RS20215"
                     /old_locus_tag="SOI80_20220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000897307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_000897309.1"
                     /translation="MLFIETSIFTKQIKELVSDEEYRQLQQDLLVQPDKGDLIKNGGGI
                     RKVRCAQGNKGKSGGIRVIYYWVTEDDQIFFLVAYPKSVKDNLTDKETSILRQLVKEQF
                     HG"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(3592..3789)
                     /locus_tag="SOI80_RS20220"
                     /old_locus_tag="SOI80_20225"
     CDS             complement(3592..3789)
                     /locus_tag="SOI80_RS20220"
                     /old_locus_tag="SOI80_20225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005237334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000476222.1"
                     /translation="MFKQTLSVKDQFGVKHAIQATVDHEFANTQSHLNIKHITVDGEDI
                     RPSFEMLFQSTLSGKIFKII"
                     /name="hypothetical protein"
     gene            complement(3856..4083)
                     /locus_tag="SOI80_RS20225"
                     /old_locus_tag="SOI80_20230"
     CDS             complement(3856..4083)
                     /locus_tag="SOI80_RS20225"
                     /old_locus_tag="SOI80_20230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005166620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000921865.1"
                     /translation="MLKVNDLIAKSKNGTEIIVSLIPLHKMQNTRQGLKQIEVGKRVLL
                     ESGIEVDLNLDGRTFYTSLNQLFKLNHKVA"
                     /name="hypothetical protein"
     gene            complement(4181..4396)
                     /locus_tag="SOI80_RS20230"
                     /old_locus_tag="SOI80_20235"
     CDS             complement(4181..4396)
                     /locus_tag="SOI80_RS20230"
                     /old_locus_tag="SOI80_20235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004693381.1"
                     /GO_component="GO:0005829 - cytosol [Evidence IEA]"
                     /GO_function="GO:0003676 - nucleic acid binding [Evidence
                     IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 -
                     transcription antitermination factor activity, RNA binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="WP_000071892.1"
                     /translation="MSNSNVVKGTVKWFNETKGFGFIQQESGPDVFAHFSEIASSGFKT
                     LFEGQQVEFSVAQGQKGPNAVNIVAI"
                     /name="cold-shock protein"
     gene            <4952..5155
                     /locus_tag="SOI80_RS20235"
                     /old_locus_tag="SOI80_20240"
                     /pseudo=""
     CDS             <4952..5155
                     /locus_tag="SOI80_RS20235"
                     /old_locus_tag="SOI80_20240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005248576.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     Typing          2..951
                     /name="rep_cluster_1172"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgagagaat tagtggtaaa agacaatgcc ttaatcaatg caagctataa cttagattta
       61 gtagaacaac gtttaatttt attggccatt gttgaggcaa gagaaagcgg gaaaggtatt
      121 aatgcgaatg atccccttga agtacatgca gaaggctata tcaatcaatt tggcgtacat
      181 cgcaatacgg cttatcaagc attaaaagat gcctgtaatg atttatttgc aagacaattt
      241 agctatcaaa aaataaatga acgagggaat attgagaact atagatcccg ttgggttagt
      301 gaaattggat atgtagataa tgaagcagtg gttaaactta tctttgcccc agccatagtt
      361 cccttaatta cacgcttaga agagcatttc actaaatacg aattgcagca agttagtaat
      421 ctcagcagtg cttatgctgt tcgcttatat gaattattaa ttgcttggag aagtactggc
      481 tctactcctg ttatagagct aagtgatttc cgtcaaagaa ttggcgtact cgatacagag
      541 tacaagcgta tggaacgctt taaaactagt gtacttgagc ttgctattaa acaaattaac
      601 gaacatacag atatcactgt gaagtatgag caacacaaaa gaggtcgatc aatttcagga
      661 ttctctttta cttttaaaca gaaaaagaag gacaacccac cgatagaaag agatccgaat
      721 acgttagatc tctttacaaa gatgactgat gcacaacgcc atatgtttgc aaataaactt
      781 tctgaacttc ctgaaatggg tcgttattcc cagggaactg aaagctatcc gcaatttgct
      841 gttcgtattg ctgagatgct gcaagaccct gaccgaataa aagaactata cccataccta
      901 aaaaaagtgg gatatatgcc atcaaataaa aaggacaccg taaatggcta agttatcact
      961 aagtgaagta tctaaaaaat tccatgtgga tagatcaacc atttacagag ctgtacgtaa
     1021 tggacgttta tcacgctcca gtgatggaca attcgatcta gcagaggtca tccgatgctt
     1081 tggagaacct gagcaaacat ctcaaaaaat tgaatcatct aggcaagaag gtgatgaatc
     1141 tacaaaaaaa cttattgccc atttagaaaa tgaagtcaaa aaataccaag aacgtgaaga
     1201 acggttaatg caacaaattg accgtatgca aacactcatt gagctgaaaa gtgttgcacc
     1261 tgccacagca ttaccacaac aagatgctac ggcatgcgac accgacatgc cacagcatgc
     1321 gacaacacaa caagacaatg ataataaaaa gaataatgaa ttcaatattg cagaaaatgt
     1381 ggcagtgcca cagcaagaaa ctacggcata ccacacccaa acgctacagc atgccacgtt
     1441 gcaaaatgtg gcagtgccac aacacaaaaa gcgtggctta tttggccgtg tgctgaatgc
     1501 tgtgtttgat catgactgag caatcaaggg agagagatca tgccaaaatt gaaagacatt
     1561 gccctgggca ttattgtggc cccactgtta atcccaatca tgctggttgc atcgtaccag
     1621 gataaaaagg cactcaaaaa agagctgaat gaacgccaaa aagaaaaaga ccaggcatcc
     1681 tgattattca attaacctaa acaaagttgt gaaacattga tcaaataata ggcgtggaac
     1741 gtgaaaaatc ataaaaaaaa cccaccttgg ggaagatggg ctataaacta gaaactacag
     1801 cattgatttc tatagataat tataacgcat ttcgtataag gtgtattatg ttaataatat
     1861 aaatttttaa aagcatattg atttaataat agaaaaatta tcagagtagg gcatgtgtaa
     1921 agtaaacgtt cgattattaa ccaataatga ttaaagattt atatcttgta tgtgttaatt
     1981 ttattaacat atatatacga aattaataat gccttaagtg aaatagtatg ctaggtaaaa
     2041 atcatcattt tttaaaaaaa ttttcgatca gtgatgctgc tatagcgtat aaaaaacctc
     2101 gctcgactat acttaaatat ataaaaagcg gagatttcga acttgactac aataaattga
     2161 ttgaatacag tcagttagtt agaaaatttg gtgaacttac ttaccctata caggacgaaa
     2221 gagagcaaca aatcaaagaa ctaaaagatg aagttatgca tttaaaaaaa caacttaact
     2281 tttttaaata tacttcaatc tcaaacaaaa atagactatt aatttctcat aaacattcca
     2341 tttaacataa tacaccttat acgaagtaca cttgtatatt aacatttaaa tcaataactt
     2401 aaaaaattca tcctgatcat aaaaaccgca aaaagccgat tttgaaataa gtcggctttt
     2461 ttatgatcgg ttttgatagt tcttgccaac acttttgctc aaaaaacact caaaacccaa
     2521 aatcacatac actctataag gctttcagcc taaaaacaat ccacaatttt tgcggataaa
     2581 ccttggggta agttttgagc aatgttgtac gctcaggctg acatgaatta aggaacattg
     2641 cgtctatgtc atctctgcga attttcttat gatggggaca tagagaacag gatgttccaa
     2701 cacataaaac aataatgata agtgcaacac caggacgtga ggtacgacag gagttatacc
     2761 taaacaccta atacgaaaaa gcccgacagg atgtcgggct tttttattat ctaaacttct
     2821 taaattaaag ttggatgagc atctaaaata cgaattaaag tcgctgcagg accagtcgga
     2881 tagcgacggc cttgttccca gttttgcagg gttctcgcgc tgatatgcaa acgtgcagca
     2941 aattcagcct gggttaagcc tgttttctca cgtacttctt taatatccgg taattcaagc
     3001 tctgtgactc gacttgcctt tatctcctta cgcttgatgg caccagcttc tttgattgaa
     3061 gcaaccaggt catcaaataa gttgttatcc atgaaattgc tcctttacta attgacgtag
     3121 aatcgaggtt tctttgtctg tcagattatc tttcacagac tttggataag ccaccaggaa
     3181 aaagatctga tcatcttctg taacccaata atagatcaca cggataccgc cacttttgcc
     3241 tttattgccc tgagcacaac gtactttacg aattccacca ccattcttga ttaagtcgcc
     3301 cttatcaggc tgtaccaaga gatcttgctg gagctgacga tactcttcat cactcacaag
     3361 ctctttgatt tgcttagtaa aaatactggt ttcaatgaat aacataggtt taagtacgtc
     3421 aatggcgtat aagaatttta gcagttttag aataaaaaaa cgagagctgt gaactctcgt
     3481 ttcgcataag caaaggctta caaatataaa tattaggtat aaaaaacccg catgatagcg
     3541 agtaggtcct gatatttcat tcagactata gattttataa aaactatatt tctagatgat
     3601 tttaaatatt tttccactta aggtactttg aaaaagcatt tcaaaactag gtcgaatatc
     3661 ttcaccatca acggtgatat gttttatatt caaatgagat tgtgtgttgg caaactcatg
     3721 atccactgtg gcttgaatag cgtgtttaac gccaaactgg tcttttacgc tgagagtctg
     3781 tttaaacata tatatttcct taaaaaaatt gcagtggaaa tcccacataa attattgatg
     3841 tttaaaaatt tatcgctaag caactttatg atttaattta aatagctgat ttagagaagt
     3901 gtaaaatgta cggccatcca aatttaaatc aacttcgatt ccagattcca gtagaactct
     3961 tttacctact tcgatttgtt ttaaaccttg acgtgtattt tgcattttat gtagaggaat
     4021 taatgaaaca ataatttcag taccattttt agattttgca attaaatcat ttacttttaa
     4081 caacttatat cctatttttt agagattttt tcaattttga aaacatttta aagcttaaaa
     4141 aaagcactta tgagtgcttt ttattactgc ttattattac ttagatagca acaatattta
     4201 cagcattcgg tcctttttga ccttgagcta cactgaattc aacttgctgg ccttcaaata
     4261 aggtcttgaa acctgaactc gcgatttcgc tgaaatgagc aaaaacgtct ggacctgatt
     4321 cttgttgaat gaaaccaaaa cctttagttt cgttaaacca cttaacagta cctttaacaa
     4381 catttgagtt tgacataata tatcctacta atttttaata attttttagt cattttattg
     4441 actgattaat aactttgaaa ataataaaga atgagactta aaatctaaaa aacgaaggat
     4501 tatgactaaa actgcgatac ttaaggaaga tttaccgaaa caagactttt tttctagtta
     4561 agttaaatat acagtaaaaa taaaaataat caagtttttt gatataaata ttaatttttc
     4621 ttataaaatc catatttttt tctttaaaaa ttaattaaat tcaataagtt atttattata
     4681 ttatttaata ttttctttaa cataaaatct cttatgcgaa attacatacc aactttaacc
     4741 acattgtgga caggttggag tttagagata agaaaaattt ctagagcatt tgctaaataa
     4801 gccctatcac gttcaaagcc tatcgtaatg atggatccag catcttttaa tcttggatct
     4861 atcgcaatat attcagtttt atcttcattc catcggcaat atttcattac cctggcgctt
     4921 aagccattac cacgataacg gccagcacct cttcaaagaa catgcctgga agcagtacca
     4981 acaacaacat ccggccaaag ccaagcaata ccagactcta tacccatcct atcaagtcat
     5041 taaaaaatgt gtggatgaga tcaaagcaga acaacaaatg aaacttagac aagaacaaca
     5101 gctcaaagca aagcaacatg cgccaaaaat gaaatctcgt ggcatgagtc gataaacaga
     5161 gcgaatgtct acgagcgaac tgaaaaaatt tgcttatccc tttccctgat tacaagctct
     5221 ctatccatca atcacctgct ttacagagca tcccgaatgg gtgcgaactt tccaaatttg
     5281 attcctaaac cgagcgtagc gagaaaaaaa agcttatgag cgaagcgaat tccgagttgc
     5341 ttttgctttt tctaaaattc acgaaaatat gaaccaaaaa ttgccccgac gaatcgagcg
     5401 aaagcgagat tcaatagagt ttgagcgaac gaagtgaagc gaaaaccaag ggcaattttt
     5461 cactccttgg gcttttaatt attttaaagt ttttaaatgc ttttagatat gctgaaagcc
     5521 tttgttcaca atgcttttaa ggtttatatg acaccgttta ccttgcaata tgacaccgtt
     5581 taccttgcaa tatgacaccg tttaccttgc aatatgacac cgtttacctt gcttatagca
     5641 ctaaaattaa ttattgtgtc atagcataat aattaatact ggtgcttc
//
