LOCUS       NZ_CP139034             2570 bp    DNA     linear   CON 26-JAN-2024
DEFINITION  Klebsiella aerogenes strain KA04 plasmid pKA04-7, complete sequence.
ACCESSION   NZ_CP139034
VERSION     NZ_CP139034.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38257105
            Assembly: GCF_034044195.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella aerogenes
  ORGANISM  Klebsiella aerogenes
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   fang,y., wu,z. and hu,l.
  TITLE     First Report of OXA-181-Producing Klebsiella aerogenes in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   fang,y., wu,z. and hu,l.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-NOV-2023) Department of Clinical Laboratory,Affiliated
            Jinhua Hospital, Zhejiang University School of Medicin, yinfei fang,
            renmin road 365, Jinhua, zhejiang 321000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2023
            Assembly Method                   :: SPAdes v. 3.11.1
            Assembly Name                     :: KA04
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 12.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 12:21:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,656
            CDSs (total)                      :: 5,535
            Genes (coding)                    :: 5,395
            CDSs (with protein)               :: 5,395
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 60 of 140
            Pseudo Genes (incomplete)         :: 91 of 140
            Pseudo Genes (internal stop)      :: 31 of 140
            Pseudo Genes (multiple problems)  :: 30 of 140
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP139034.1.
            Bacteria and source DNA available from Affiliated Jinhua Hospital,
            Zhejiang University School of Medicine.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Klebsiella aerogenes"
                     /mol_type="genomic DNA"
                     /strain="KA04"
                     /isolation_source="faeces"
                     /host="Homo sapiens"
                     /db_xref="taxon:548"
                     /plasmid="pKA04-7"
                     /geo_loc_name="China: zhejiang"
                     /lat_lon="29.06 N 119.39 E"
                     /collection_date="2022-11-27"
     gene            <1..444
                     /locus_tag="SH589_RS28275"
                     /old_locus_tag="SH589_28280"
     CDS             <1..444
                     /locus_tag="SH589_RS28275"
                     /old_locus_tag="SH589_28280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005220837.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0000150 - DNA strand exchange activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="WP_088492131.1"
                     /translation="TQRPQLEALLSFVREGDTVVVHSMDRLARNLDDLRRLVQKLTQRG
                     VRIEFLKEGLVFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRK
                     KALSDEQAATLRQRATAGEPKAQLAREFNISRETLYQYLRTDD"
                     /name="recombinase family protein"
     gene            448..>2570
                     /locus_tag="SH589_RS28280"
                     /old_locus_tag="SH589_28285"
     CDS             448..>2570
                     /locus_tag="SH589_RS28280"
                     /old_locus_tag="SH589_28285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element TnAs1 family transposase"
                     /protein_id="WP_327062024.1"
                     /translation="MPRRLILSATERDTLLALPESQDDLIRYYTFNDSDLSLIRQRRGD
                     ANCLGFAVQLCLLRYPGYALGTDSELPEPVILWVAKQVQAEPASWAKYGERDVTRREHA
                     QELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPALSVID
                     RACSEAIARANRRVYRALVEPLTDSHRAKLDELLKLKAGSSITWLTWLRQAPLKPNSRH
                     MLEHIERLKTFQLVDLPEGLGRHIHQNRLLKLAREGGQMTPKDLGKFEPQRRYATLAAV
                     VLESTATVIDELVDLHDRILVKLFSGAKHKHQQQFQKQGKAINDKVRLYSRIGQALLEA
                     KESGSDPYAAIEAVIPWDEFTESVSEAELLARPEGFDHLHLVGENFATLRRYTPALLEV
                     LELRAAPAAQGVLAAVQTLREMNADNLRKVPADAPTAFIKPRWKPLVITPEGLDRKFYE
                     ICALSELKNALRSGDIWVKGSRQFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYLE
                     ERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRI
                     KITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTY
                     AKLSWLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRGESTG
                     HVNPKYGSEPGRL"
                     /name="Tn3-like element TnAs1 family transposase"
ORIGIN
        1 acccagcgcc cccagctcga agcgctgctg agcttcgtcc gcgaaggcga tacagtggtg
       61 gtgcacagca tggatcggct ggcccgcaac ctcgatgacc tgcgtcgctt ggtacagaag
      121 ctgactcagc gcggcgtgcg catcgagttc ctgaaggagg gcctggtgtt cactggcgag
      181 gactcgccga tggccaacct gatgctgtcg gtgatggggg ccttcgctga gttcgagcgc
      241 gccctgatcc gcgagcggca gcgtgagggc atcgccttgg ccaagcagcg tggcgcgtac
      301 cggggccgca agaaagccct gtccgatgag caggctgcta ccctgcggca gcgagcgacg
      361 gccggcgagc ccaaggcgca gcttgcccgc gagttcaaca tcagccggga aaccctctac
      421 cagtacctcc gcacggacga ctgacacatg ccgcgtcgct tgatcctctc ggccacggag
      481 cgggacaccc tgcttgcgct gccggaaagc caggatgacc tgatccgcta ctacaccttc
      541 aacgactccg acctgtcgct gatccgccag cgacgcggcg acgccaactg cctcggcttc
      601 gccgtgcagc tctgcctgct gcgctacccc ggttacgcgc tgggaaccga cagcgagctg
      661 cccgagccgg tcatcctgtg ggtggcgaag caagtccagg ccgagccggc gagctgggca
      721 aagtacggcg agcgcgacgt gacccgtcgc gagcatgccc aggaactgcg cacctacctg
      781 caactggccc cgttcggcct gtccgacttc cgcgccctgg tgcgcgagct aaccgagctg
      841 gcccagcaga ccgacaaagg cttgctgctg gccggtcagg ccctggagag cctacggcag
      901 aaacgacgca tcctgccggc gctgagcgtg attgaccggg cctgctcgga agccattgcg
      961 cgagccaatc ggcgggtcta ccgcgccctg gtcgaaccac tcacggactc gcatcgggcc
     1021 aagctggacg agctgttgaa gctcaaggcc ggcagcagca tcacctggtt gacctggctg
     1081 cgccaggcac cgctgaaacc caactctcgg cacatgctgg aacacatcga gcggctgaag
     1141 acatttcagt tggtggactt gcccgaaggc ctgggccggc acatccacca gaaccgcctg
     1201 ctcaagctgg cccgcgaggg tgggcagatg acgcccaaag acctcggtaa gttcgagccg
     1261 cagcgccgct acgcgaccct ggccgccgtg gtgctggaga gcaccgcgac cgtgatcgat
     1321 gagctggtcg atctgcatga ccgcatcctg gtcaagctgt tcagcggcgc gaagcacaag
     1381 catcagcagc agttccagaa gcagggcaag gcgatcaacg acaaggtgcg cctgtactcc
     1441 aggatcggcc aggcgctgct ggaagcgaag gaaagcggca gcgaccccta tgccgccatc
     1501 gaggcggtga ttccctggga cgagttcacc gagagcgtca gcgaggccga gctgctggcc
     1561 cggccggaag gcttcgacca cctgcacctg gtcggcgaga acttcgccac cctgcgccgt
     1621 tacacgccgg ccttgctgga ggtgctggaa ctgcgcgccg cgccggccgc gcaaggcgtg
     1681 ctggcagccg tgcagaccct gcgtgagatg aacgccgaca acctgcgcaa ggtgccggcc
     1741 gatgcaccca cggccttcat caagccgcgc tggaagccgc tggtgatcac cccggaaggc
     1801 ctcgaccgga aattctacga aatctgcgcc ctgtccgagc tgaagaacgc cctgcgctcc
     1861 ggcgacatct gggtcaaggg ctcgcggcag ttccgcgact tcgacgacta cctgctgccg
     1921 gccgagaagt tcgccgcact caagcgcgag caggccctgc ccctggcgat caacccgaac
     1981 agcgaccagt acctggaaga gcgtttgcag ctgctggacg agcagttggc caccgtcacc
     2041 cgcctggcca aggacaacga gctgcccgat gccatcctca ccgagtcagg gctgaaaatc
     2101 accccgctgg atgcggcggt gccggatcgg gcgcaggcgc tgatcgacca aaccagccag
     2161 ttactgccgc gcatcaagat caccgaactg ctgatggacg tggacgactg gacgggcttc
     2221 agccgccact tcacccactt gaaggacggg gccgaggcca aagacaggac gttgctgctg
     2281 tccgcaatcc tcggtgatgc gatcaacctc gggctgacca agatggccga gtcgagcccc
     2341 ggcctgacct acgccaagct gtcctggctg caagcctggc acatccgcga cgaaacctat
     2401 tcggcggcct tggccgagct ggtcaaccac cagtatcgcc acgcctttgc cgcccactgg
     2461 ggcgacggca cgacctcatc ctccgatggc cagcgcttcc gcgcgggtgg ccggggcgag
     2521 agcaccgggc acgtcaaccc gaagtacggt agcgagccgg gacggctgtt
//
