LOCUS       NZ_CP138838             2299 bp    DNA     circular CON 25-NOV-2023
DEFINITION  Klebsiella quasipneumoniae subsp. similipneumoniae strain
            ACESH00366hy plasmid pACESH0366-5, complete sequence.
ACCESSION   NZ_CP138838
VERSION     NZ_CP138838.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38237310
            Assembly: GCF_033878155.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. similipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. similipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Liu,Y.
  TITLE     Klebsiella quasipneumoniae subsp. similipneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-NOV-2023) State Key Laboratory for Diagnosis and
            Treatment of Infectious Diseases, National Clinical Research Center
            for Infectious Diseases, National Medical Center for Infectious
            Diseases, Collaborative Innovation Center for Diagnosis and
            Treatment of Infectious, Zhejiang University, Qingchun Road,
            Hangzhou 310000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. NOV-2023
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/25/2023 12:58:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,444
            CDSs (total)                      :: 5,322
            Genes (coding)                    :: 5,146
            CDSs (with protein)               :: 5,146
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 176
            CDSs (without protein)            :: 176
            Pseudo Genes (ambiguous residues) :: 0 of 176
            Pseudo Genes (frameshifted)       :: 64 of 176
            Pseudo Genes (incomplete)         :: 112 of 176
            Pseudo Genes (internal stop)      :: 44 of 176
            Pseudo Genes (multiple problems)  :: 37 of 176
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138838.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Klebsiella quasipneumoniae subsp.
                     similipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ACESH00366hy"
                     /isolation_source="human urine"
                     /sub_species="similipneumoniae"
                     /db_xref="taxon:1463164"
                     /plasmid="pACESH0366-5"
                     /geo_loc_name="China:Guangxi"
                     /collection_date="2020-12"
     gene            complement(107..307)
                     /locus_tag="SHK10_RS27210"
     CDS             complement(107..307)
                     /locus_tag="SHK10_RS27210"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_073553799.1"
                     /translation="MLKKDDIILIKSYGNEKTKIFLRGVNEVLMIDASFEEVKFAINND
                     LQDLQDLQGMQAVSAPLKIVT"
                     /name="hypothetical protein"
     gene            1027..1216
                     /locus_tag="SHK10_RS27215"
                     /pseudo=""
     CDS             1027..1216
                     /locus_tag="SHK10_RS27215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1216..1650
                     /locus_tag="SHK10_RS27220"
     CDS             1216..1650
                     /locus_tag="SHK10_RS27220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_109873994.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKG
                     AVKARDEHIDSLRQAMQLLEHKHEPSSPPHSQWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 ggtaagactt actctttgtg gctgagggtg caaaaacgcg ctgagcgcgt ttgaggcggt
       61 gcacgcaacg gatgttatgg taaatgttga gtgctcttac taaaaatcag gttactattt
      121 ttagcggtgc gcttactgcc tgcattccct gaagatcctg aagatcctga aggtcattat
      181 tgatagcaaa ctttacctct tcaaagctcg cgtcaatcat tagaacctca ttcacacccc
      241 gtaaaaatat ttttgttttt tcgttaccat atgattttat taggataata tcatcttttt
      301 ttagcatgat actttcgtta cttattgttt tgagatgaag catcgtcatg gttttttttg
      361 catgtgcttg ttaaggggat tgagattatt cctaaatcct tgagtttgta catacaaaaa
      421 aaaacaaaaa aatcctaatg cccccgtggt gggtatataa aaatcacggg gagcgcagcg
      481 accttcgtcc agctcgtttc ttgtgtgtct caccctgcaa aaggtttgat tgtgtgggcg
      541 ctgtgctgac gtctgagaat cacactttgc cgcttactgc tgtcttattc gctcatttta
      601 tcaggtgctt gttatcgtac agcgagacgg ggtagagcct aactctttcg cggttaagtt
      661 acgttcccac caatttgcct gtttatcctg ccggagtccg gggcgtagac ctgagcgtct
      721 aaggtgcaga tatgatttta atgtcgttga atggtattaa gctggtagtg acaatgctag
      781 ccagccctgc taggatttga tttctgacgt ctattcctgg caggcatctg cgaagaatta
      841 gagtaccgaa gccctgtgat tctgtcacgg ggcttttgta catttaaagc ctgagaatca
      901 aaaacatccc cacaaataca ctttcaccgc tcgccgcagc cgaacgaccg agcgtagaga
      961 gttagtgagc gaggaagcgg aaaagaggct ggcttgacac tgagcactga cgctctgagg
     1021 ccctttatga ctaaacaaca taaaacagcg ctgaacatct aaattcatcc agaatcagtc
     1081 tctgctcctg ctggagaagc ttaacgagct tgatctcgat gctgaggctg acctttgtga
     1141 gaaactccac gatgatgcgg agcatctttt ccgtacactg tcctcgagac tggatgaatt
     1201 acaggatggt aactgatggc cagagtgtct attagtgaag cggcacggct tgttaaggtt
     1261 agtcgcccca caatttacaa gatgattaac agtgggaagt taagttacac ctctgttgta
     1321 aagcacggga aggctattaa agttattgat acttcagagc ttattagagt gtttggttct
     1381 cttgatggtg tcatcgatac tgtaaaatat gatgtaaaat atgatgtaaa aagtgacgca
     1441 gaatctacag gtattaacag cgttggttta catgatttac aacatagaat cgctttactt
     1501 gaagctgaaa acgatggtct taaaggggct gttaaggctc gagatgagca tattgattcc
     1561 cttcgtcagg ctatgcagct tctggagcac aagcacgaac cttcttcacc accccattcc
     1621 cagtggtgga aattctggaa aaaatcctga tcctgcaatg cttgagtttt cctctccggc
     1681 catcccgggg agttcctgaa ccttcccaaa aatcgccaga tctctgaacg ctcctcacca
     1741 ctaaaaatac ccacacacta cgcaaaatta aaattttgca gatttgtatt taatatcatt
     1801 tatttacgtt catgaaattt cgttttttta attttattta catagatccg actctatgac
     1861 gactcgccgg ggactctatg acgagtcgtc atagagtcgg taacgactca ggactataaa
     1921 aacaatgagt taataacgac ccgactctag acccgactcc ccgtttgggt gttttttaga
     1981 cgcggcgact ctaggtacga ctctagtgaa gagtcgccgg tgaatcgtgt ggtgagtcgt
     2041 ccggcgactt gccataacgt gattgccggc cgtcgacgaa cacgattcct gaaggtgctg
     2101 aaaaccggtt tccggctgcg ccggcaacgc ttcacggcca cgcaataaat tgcgtccccg
     2161 ttcaccgttt tcagtcggtt tggtgcgggt tttgagttgt ctggcgtgaa ttcaggatga
     2221 aatctgcctc cagccagtct ggtgcataac aattcatacc cgtaaaactc atctgcgcga
     2281 ttttgaggcg ttttcaggg
//
