LOCUS       NZ_CP138837             3897 bp    DNA     circular CON 25-NOV-2023
DEFINITION  Klebsiella quasipneumoniae subsp. similipneumoniae strain
            ACESH00366hy plasmid pACESH0366-4, complete sequence.
ACCESSION   NZ_CP138837
VERSION     NZ_CP138837.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38237310
            Assembly: GCF_033878155.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. similipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. similipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3897)
  AUTHORS   Liu,Y.
  TITLE     Klebsiella quasipneumoniae subsp. similipneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3897)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-NOV-2023) State Key Laboratory for Diagnosis and
            Treatment of Infectious Diseases, National Clinical Research Center
            for Infectious Diseases, National Medical Center for Infectious
            Diseases, Collaborative Innovation Center for Diagnosis and
            Treatment of Infectious, Zhejiang University, Qingchun Road,
            Hangzhou 310000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. NOV-2023
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/25/2023 12:58:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,444
            CDSs (total)                      :: 5,322
            Genes (coding)                    :: 5,146
            CDSs (with protein)               :: 5,146
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 176
            CDSs (without protein)            :: 176
            Pseudo Genes (ambiguous residues) :: 0 of 176
            Pseudo Genes (frameshifted)       :: 64 of 176
            Pseudo Genes (incomplete)         :: 112 of 176
            Pseudo Genes (internal stop)      :: 44 of 176
            Pseudo Genes (multiple problems)  :: 37 of 176
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138837.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Klebsiella quasipneumoniae subsp.
                     similipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ACESH00366hy"
                     /isolation_source="human urine"
                     /sub_species="similipneumoniae"
                     /db_xref="taxon:1463164"
                     /plasmid="pACESH0366-4"
                     /geo_loc_name="China:Guangxi"
                     /collection_date="2020-12"
     gene            join(3386..3897,1..241)
                     /locus_tag="SHK10_RS27180"
     CDS             join(3386..3897,1..241)
                     /locus_tag="SHK10_RS27180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001711308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023307481.1"
                     /translation="MGIENSNQGPGWHDHDTPYGTIHSYDGDTGTYGGGGTGGNAGGGH
                     TGLTANTWVDIATTKDYNGRYMSMCLNNLKDHEGSINTMYRDSKGNITVGIGHYLGSAE
                     MAQALPFNRTKVMHVHGDDLESEVAVSKSDIASAFNAYKSNPRDVPSMHLSNADVIGQC
                     IKDVQTTENGLRGLYPGYDRFSDPRKTALVDMGFNLGIPTLKSKFPKFNDAVNRGDWNV
                     AADESHRDLNQRGDKRNKDTADQLRYNR"
                     /name="hypothetical protein"
     gene            343..843
                     /locus_tag="SHK10_RS27185"
     CDS             343..843
                     /locus_tag="SHK10_RS27185"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_123829470.1"
                     /translation="MIRFVIAAFISILTIKGAFADINVFIAPNDLNYETNSTSEINHYL
                     DELKKNNTKVDVDKDPKISNELKKYIGIVNDRVSDVFSESEFKKYRGDVCKISITTGNT
                     APSDPVLTQVFTYDELADNKKQSCQKLNNELIKKVAKDKGLSYPKVVKDYGSLSIDMIF
                     LFK"
                     /name="hypothetical protein"
     gene            891..1025
                     /locus_tag="SHK10_RS27190"
     CDS             891..1025
                     /locus_tag="SHK10_RS27190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724569.1"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_process="GO:0019835 - cytolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="WP_110216848.1"
                     /translation="MSICVIILLAACQANYIRDVKGGTVAPSASSDIRTSSSQPIGSS"
                     /name="colicin release lysis protein"
     gene            complement(1190..1332)
                     /locus_tag="SHK10_RS27195"
                     /pseudo=""
     CDS             complement(1190..1332)
                     /locus_tag="SHK10_RS27195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            1748..1939
                     /locus_tag="SHK10_RS27200"
     CDS             1748..1939
                     /locus_tag="SHK10_RS27200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1939..2340
                     /locus_tag="SHK10_RS27205"
     CDS             1939..2340
                     /locus_tag="SHK10_RS27205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_049088770.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGLVSEQRDTASADHSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(1013..1514)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.415"
                     /coverage="99.0"
                     /evalue="1.02e-154"
ORIGIN
        1 aaatggtttg cgtggacttt acccaggtta tgatcgtttt tcagatccac gaaaaacagc
       61 attggtagat atgggtttta atcttggtat tcctacgctt aagtctaaat ttccgaagtt
      121 taacgatgca gttaatcgtg gtgattggaa tgttgctgca gatgaaagtc atcgagatct
      181 taatcaaaga ggtgataagc gtaataaaga tacggcagat caattgcgtt ataatcggta
      241 atgatttaga tttacaactc ctgccatcaa atggcaggag tgtcctcacg atattaaaac
      301 taagtcatga ggtttctaat cttatatttt atgggtggta ttatgattcg ttttgtgatt
      361 gctgctttta tttcaatctt gacaattaaa ggagcttttg ctgatatcaa tgtttttata
      421 gcgcctaacg atctaaatta tgaaacaaat tctactagtg aaattaatca ttatttagat
      481 gagctgaaaa aaaataatac taaagttgat gttgataaag acccaaaaat tagcaatgag
      541 ttaaaaaaat atattggtat tgttaacgat agagtgtctg atgttttcag tgaaagtgaa
      601 tttaagaagt atcgtggcga tgtctgtaaa atatcaataa caactgggaa tacggctcca
      661 tctgatcctg ttttgactca agtgtttact tatgatgaac tagctgataa taaaaaacaa
      721 tcatgtcaaa aattaaataa tgagctaata aaaaaagttg ctaaagataa gggtttatca
      781 tatccgaaag ttgttaaaga ttatggatct ttatcaattg atatgatctt tttatttaaa
      841 taaaaataaa tttacggtgt tgtttatgcc ttttaaaaaa gtcttttcca atttctattt
      901 gtgtaattat attgttggct gcctgccaag ctaactatat tagggacgta aaaggaggaa
      961 ctgttgctcc atcagcttct tcagatataa gaacgtcgag ttcgcaaccc ataggatctt
     1021 cttgagatcc ttagcggata gtcgtaatct ttgctctgta aacgaaaaaa ccacccggca
     1081 aggtggtttt ttcgaaggtt cattaaccgg caagtttctg aaccgtggta actggctttc
     1141 gcagagcaca gaaaccgaat tagttctaac agtgtagctg tagtttacct cacacttcaa
     1201 cacttctttg ttctgcgaat gcgttaccag tggctgctgc cagtggtgat aagtcgtgtc
     1261 ttttcgggtt ggactcaagt tgatagttac cgaaaaggcg cagcagtcgg actgaacggg
     1321 gggttcgtgc atacagtcca gcttggagcg aactgcctac ccggaactga gtgtcaggcg
     1381 tggaatgaga taaacgcggc cataacagcg gaatgacacc ggtaaaccga atggcaggaa
     1441 caggagagcg cacgagggag ccatcagggg gaaacgcctg gtatctttat agtcctgtcg
     1501 ggtttcgcca ccactgattt gagcgtcaga ttccgtgatg ctcgtcaggg gggcggagcc
     1561 tatggaaaaa cggccgcctt gcggcctttc cttcctctcc tccgttgaac gctctgcttt
     1621 ctcgagcttt tatacggatg ctcctgccgc tcgccgcagc cgaacggcgg aagcgtagcg
     1681 actgagtgag cgaggaagcg gaaaagagaa catccctata ctgagcactg acgctctgag
     1741 gcctcttatg acgaaacaac agaaaacagc gctgaacatg gctaaattca tccagaatca
     1801 gtctctgctc ttgctggaga agcttaacga gcttgatctc gatgttgagg ccgacctttg
     1861 tgagaaactc cacgatgatg cggagcatct tttccgtaca ctgtcctcga gactggatgc
     1921 attacaggat ggtaactgat ggccagagtg tctattagtg aggctgcccg actgacgggt
     1981 aagagtagaa caacactgca caggttaatt aaagcaggtg acctgtccac ctgtagcggt
     2041 gaacgcaatg caaaaatggt agatacttca gagcttttac gtgtctttgg tccctttgag
     2101 caaccgaagg gtgaacacca ttctggactg gtgtctgaac agcgtgatac agcctctgct
     2161 gaccatagtg aacaggtgat tcgtcatctg aaacaggaga ttgaacacct gaatacctta
     2221 cttttgtcca aggattcgca cattgacagc ctgaaacagg ccatgctcct tcttgaaaat
     2281 caccaggcaa aattaactga atccccggcg ccatggtgga aattctggaa aaaatcctga
     2341 ccccgtcgtg cttcagtttt cctctccggc catcccgggg agttcctgaa ccttcccaaa
     2401 aatcgccaga tctctgaacg ctcttcacca ctaaaaatac ccacacacta cgcaaaatta
     2461 aaattttgca gatttgtatt taatatcagt agtttacttt catgaaattt cgttttttaa
     2521 attttattta catagatccg actctatgac gactcgtcat agagtccccg gcgagtcgtc
     2581 atagagtcgg taacgactca ggactataaa aacaatgagt taataacgac ccgactctag
     2641 acccgactcc ccgtttggtt gttttttaga cgcggcaact ctgggtacga ctctagtgag
     2701 gagtcgccgg tgaatcgtgt ggtgagtcgt ccggcgactt gccataacgt gattgccggc
     2761 cgtcgacgaa cccgattcct gaacgtgctg aaaactggtt ttccggctgc gccggcaacg
     2821 cttcacggcc acgcaataaa ttgcgtcccc gttcaccgtt ttcggatggg aagaacgccg
     2881 gaaacaggac ttaccctggc tgaatggcgt gaattttctc gctatgcact tgcgtgcata
     2941 ctcatgcatg ccttaaaaac agagcctgcg cgtttctggc gggttttcgg gtggtttgtt
     3001 gcctgtttta ccggtttccc gtcagaaacg ccctgaggcc gttttagcgg tgcgtacaat
     3061 tatggcttta tgttaaatca ttgccgcaaa cagccacgaa aagcttactt ggcatcggct
     3121 ctactagcct gttaaaactc atattttgaa ctcaatcatt taaatttcgt cttttcaggc
     3181 gtacaacttc gataactaaa aatttatgtg aaatagatat ttatccaaca gttatgtaga
     3241 taagaataaa acatcaatat ttttttgaga gtgtcaagga agttatagtg agaatttttc
     3301 taaaagtatt gacagattca aagaagatga ataaatttat actgtttatt tatacagttg
     3361 tttttttgtc aaagaggtaa tgtttatggg tattgaaaat tcaaatcagg ggccaggatg
     3421 gcatgatcat gatactcctt atggcactat tcacagctat gatggtgata ctggtacgta
     3481 tggaggtggt ggaactggag ggaatgctgg tggtgggcat accggtctta ctgcaaatac
     3541 atgggtagat atcgcgacaa caaaagatta taacggtaga tatatgtcta tgtgtttaaa
     3601 taatcttaaa gaccatgaag gttcaattaa tacaatgtat agagactcta aaggtaatat
     3661 taccgttggt attggtcatt accttggttc tgctgagatg gctcaggcat taccttttaa
     3721 tcgaacaaaa gttatgcatg tgcatggtga tgatcttgaa agtgaggtcg ccgtatctaa
     3781 gtctgatata gcttcagcat ttaatgcata caaatcaaac ccaagagatg ttcctagtat
     3841 gcatctttca aatgctgatg taataggtca gtgtattaag gatgttcaaa ctactga
//
