LOCUS       NZ_CP138813             4355 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 11383 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP138813
VERSION     NZ_CP138813.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040185
            Assembly: GCF_033854795.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4355)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4355)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:43:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,043
            CDSs (total)                      :: 5,921
            Genes (coding)                    :: 5,721
            CDSs (with protein)               :: 5,721
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 200
            CDSs (without protein)            :: 200
            Pseudo Genes (ambiguous residues) :: 0 of 200
            Pseudo Genes (frameshifted)       :: 80 of 200
            Pseudo Genes (incomplete)         :: 127 of 200
            Pseudo Genes (internal stop)      :: 39 of 200
            Pseudo Genes (multiple problems)  :: 36 of 200
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138813.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4355
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="11383"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-05"
                     /collected_by="He Fang"
     gene            join(4250..4355,1..203)
                     /locus_tag="R8562_RS30145"
                     /old_locus_tag="R8562_30135"
     CDS             join(4250..4355,1..203)
                     /locus_tag="R8562_RS30145"
                     /old_locus_tag="R8562_30135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcdB family protein"
                     /protein_id="WP_094309572.1"
                     /translation="MQFMVYRNNSNNRAYPYLLDVQSDIIDELNTRLVIPLFLLDEVNG
                     RPARRLTPVLNVDGEDFLVMTHEMASVRQSQLGEEVVSVQEHRQAIKNALDFLLDGF"
                     /name="CcdB family protein"
     gene            complement(307..543)
                     /locus_tag="R8562_RS30150"
                     /old_locus_tag="R8562_30140"
     CDS             complement(307..543)
                     /locus_tag="R8562_RS30150"
                     /old_locus_tag="R8562_30140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_037427059.1"
                     /translation="MTETEKLLLSALERLQDDYETRQQAWQASYDSLQTMFTTTSAALM
                     RSDQACQHLSGQVESLRQQVMSLTEAVSRLTRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(604..1089)
                     /locus_tag="R8562_RS30155"
                     /old_locus_tag="R8562_30145"
     CDS             complement(604..1089)
                     /locus_tag="R8562_RS30155"
                     /old_locus_tag="R8562_30145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_139592782.1"
                     /translation="MSGILDLAKAFEETSKQQAQRTGESVKSEFVKLEQSISEALKSSG
                     KNISDAIHEQNTRQTTLLRRSVTIALIWILVCGVLLIGILSGILWFQGTLIASRLDEMN
                     SYSQQLTDLKAKSGAGVEILTDDTRKNKYYVVLPKSAKGVELYTSKNDKQVVTYTAK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1136..1558)
                     /locus_tag="R8562_RS30160"
                     /old_locus_tag="R8562_30150"
                     /pseudo=""
     CDS             complement(<1136..1558)
                     /locus_tag="R8562_RS30160"
                     /old_locus_tag="R8562_30150"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1758..2093)
                     /gene="mobC"
                     /locus_tag="R8562_RS30165"
                     /old_locus_tag="R8562_30155"
     CDS             complement(1758..2093)
                     /gene="mobC"
                     /locus_tag="R8562_RS30165"
                     /old_locus_tag="R8562_30155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_080202507.1"
                     /translation="MDKRTKEIKIRLTESEHERLLARCDRAHLAEWLRSLGLGEHVLRR
                     RRVPDVDPALLRQVTGIGNNLNQIARKLHGLDAIPAYQQVSLLAVLTSLDRQLSELLET
                     QRDRQNS"
                     /name="mobC"
     gene            complement(2339..2839)
                     /locus_tag="R8562_RS30170"
                     /old_locus_tag="R8562_30160"
     CDS             complement(2339..2839)
                     /locus_tag="R8562_RS30170"
                     /old_locus_tag="R8562_30160"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_047590535.1"
                     /translation="MFGFFRKKISSNQVDLYVSDKILGVAKKVVAIVEANGVTIVDGEG
                     VVFLAAGLFLNATYLKEHGRKSEAVRVKVIGFVKHYLDSTDDKNMLERLSDNTRWFSQG
                     NMSDSWFLNQVIGDLCGLKVNPIHQQILSTEVLDTLLKFFHERTVTISNTLCEDIYPFY
                     NPA"
                     /name="hypothetical protein"
     gene            complement(2839..3729)
                     /locus_tag="R8562_RS30175"
                     /old_locus_tag="R8562_30165"
     CDS             complement(2839..3729)
                     /locus_tag="R8562_RS30175"
                     /old_locus_tag="R8562_30165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001517860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_080202504.1"
                     /translation="MTNQALDLFNERLPRKPYFTDELQFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRPGAAIDWSDRNAPAPTLTIMNPENGHAHLLYALKTAVRTAPDGKMK
                     PLKYAAAVERALCQKLDADTGYSGLICKNPNHDHWQLAVWQPELYTLDWLADSLDLSAA
                     NDKEILPDYGLGRNCTLFDKTRKWAYRAIRQGWPEYEQWLQACYERASAYNLQFLAPLD
                     ENEVSGIAKSIAKWTYKNFSEANFVQYVADTHSSEIQSKRGMKSRGGGRPKIVGSPWLD
                     LGISRSKWYRDFRGL"
                     /name="replication initiation protein"
     gene            4011..4250
                     /locus_tag="R8562_RS30180"
                     /old_locus_tag="R8562_30170"
     CDS             4011..4250
                     /locus_tag="R8562_RS30180"
                     /old_locus_tag="R8562_30170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system CcdA family
                     antitoxin"
                     /protein_id="WP_064179603.1"
                     /translation="MPVSAMRHKKTVSVTIEPALLHQAREAGINLSATLTTALKHQIRE
                     SEAERWKRANRKAIQELNRITDEHGLLSDDHRTF"
                     /name="type II toxin-antitoxin system CcdA family
                     antitoxin"
ORIGIN
        1 cgctgtttct gctggatgaa gtgaatggac ggcccgcccg ccgcctgacc ccggtgctga
       61 atgtggacgg tgaggatttt ctggtcatga cacatgaaat ggccagcgtt cgccagtcac
      121 agctagggga agaggtggtg agcgtccagg agcaccggca ggccatcaag aatgcgctgg
      181 attttctgct cgacggtttc tgagtttacc tttccatccc gtgatcgtgt ccccggctgc
      241 gtccgggggc aaatgagcgc gttttctgtc gttcctgttt ctgcgccagc tccctgtcca
      301 gtctggctac ctgcgcgtca agcggctgac ggcttcggtt aagctcatga cctgctgccg
      361 caagctctcc acctgcccgc tcaagtgctg acacgcctgg tcgctgcgca tcagcgcggc
      421 ggaagtagtg gtgaacatgg tctgcaagct gtcgtaactg gcctgccatg cctgctgtcg
      481 tgtctcgtaa tcgtcctgta agcgctctaa cgcactcagc agcagttttt cggtctcggt
      541 catggatttg cttgtcctta tcgctaaaaa cgccgtatgg cgcttctgtg gcaactgacg
      601 gggctatttc gcggtgtagg tcactacctg tttgtcgttt ttcgaggtgt acagctcgac
      661 gcccttcgcg ctcttcggca gcaccacgta atacttgttc ttccgggtgt cgtccgtgag
      721 tatttccacc cccgcccccg atttcgcttt caggtcggta agctgctggc tgtagctgtt
      781 catctcgtcc agccgtgagg cgatgagtgt cccctgaaac cacagtatcc ccgacagaat
      841 accgatcagc agcacaccac aaaccagtat ccatatcagc gctatcgtga ccgagcgccg
      901 cagcagggtt gtctgccggg tgttctgctc gtggatagcg tcgctgatgt tcttcccgct
      961 tgatttcaag gcctcgctga tggattgctc gagcttcaca aactcgcttt tcacgctctc
     1021 cccggtacgc tgtgcctgct gcttcgaggt ctcctcgaag gctttcgcta aatctaaaat
     1081 cccgctcata taacgctcct tttaaccgga tatttcgtcc accgtccggg tcggcaatgc
     1141 tgagactgct tttcgtttct cgcaccactg tcaacccgcc gttttccagc gccctgacca
     1201 catcctcacg gtcgcggatc atcccctgtg ccaccatcgt ttccagcgag tccgtaatgg
     1261 tctgcgccgc cttctgacgg tcgccgggaa ggtcatttcc cggtgtcagg gttcgccttc
     1321 gggcgggatc atgagggtca tcaagattca ggcggtcatt ggtcagagtc tgccaggcgt
     1381 tgaccctggg acggtcagcc cggtcatagt agggttgcag gcgtttcccg ctctgcaatt
     1441 cgatgttcgg gatcacaaaa ttcagctcca gcctgtcctt gtcccggtgc tccacccaaa
     1501 ggcaggcgta ctggtcgcca tccagaccgg gcaacagtgt ctgctcgaac tcctccatca
     1561 gacgctcttt ctcatcgtca gggaggtttt cttcccggaa cgacaacacc ccggaggtgt
     1621 aggcgcgggc aaaatcacaa ccatcaatca gttgcctgat acgctcaggc tcaccgcgca
     1681 gcaccaccgc tttttccctg tctcgttctt tccccagcag gtaatccacc gggccactgc
     1741 ctgcacccgc accccggcta tgaattttga cgatcacgct gtgtctccag aagctcagat
     1801 aactggcgat caagactggt cagtaccgcc agaagagaga cctgctgata ggccgggata
     1861 gcgtccagac catgcagctt acgggctatc tgattaaggt tatttccgat gccggtcacc
     1921 tggcgaagca gtgccggatc tacgtcaggc acacgccgac gacgtaatac atgttcaccc
     1981 aaaccgagcg agcgcagcca ttcagcgaga tgagcacgat cacaacgtgc cagtagtcgc
     2041 tcatgttcac tctcagtcag gcggattttt atctctttcg ttcgcttgtc catgacactc
     2101 cgctgagaaa aaattcgcac ccagagtgcg aattttcgca gtggatgcca ggggtttcgg
     2161 ggggcggcga gccccctgaa ccagtcacag aaggaaccct cgcagagggg acgctgtgtg
     2221 tactggctta aagggtagta cagtatgtca ggttctgtgc tgtctgcaaa aaaaaagccc
     2281 tctgctagag agggctgtta tctgatatag gttgttttgt cccaaactac aaagacggtc
     2341 aggctggatt ataaaatgga tatatgtctt cacagagtgt gttactgata gtgactgtgc
     2401 gctcgtggaa gaatttcagc agtgtatcta gcacttcggt tgatagaatt tgttggtgga
     2461 tgggattaac cttcaacccg caaaggtccc caattacttg attaagaaac caagaatccg
     2521 acatattccc ttgagaaaac cagcgagtgt tatcagataa tctttccagc atattcttat
     2581 catctgttga atctaggtag tgctttacaa aaccaataac tttaactctt acagcttctg
     2641 attttctccc atgttcctta agataagtag cattgagaaa aagtccagcg gctaaaaata
     2701 caaccccttc accatcaaca atggttacgc cattagcttc aactatggct acaaccttct
     2761 ttgcaacacc tagaatctta tcgctaacgt ataagtcgac ttgattgctg ctaatttttt
     2821 ttctaaaaaa accaaacatt ataaccctct aaaatctcta taccatttag aacgactgat
     2881 ccctaaatca agccaagggc ttccgacaat ctttggcctt ccccctcctc ggcttttcat
     2941 tcctcttttc gattgaattt cagatgagtg agtatctgca acatattgca caaaattagc
     3001 ttcagagaag tttttgtatg tccatttagc aatgctctta gctattccac taacttcatt
     3061 ttcatccaga ggggctaaaa attgcaggtt ataggcactg gcacgttcgt agcaggcttg
     3121 cagccactgc tcatactcag gccagccctg acggatagca cggtatgccc acttgcgggt
     3181 tttatcgaac agggtgcagt tacggcctaa accataatcg ggtaggattt ctttgtcgtt
     3241 cgccgcactc agatcgagtg agtccgctaa ccagtccagc gtgtaaagtt ccggctgcca
     3301 cacggcaagc tgccagtggt catggttcgg attcttgcag attaaccccg aatagccggt
     3361 gtcagcgtcc agtttttgac acagcgcacg ctcaaccgct gccgcatact tcagcggctt
     3421 catttttccg tcaggtgcgg tgcgtactgc ggttttcagt gcgtacagca aatgggcgtg
     3481 accattttcg ggattcatga tggtcagtgt gggcgcgggg gcgttgcggt cgctccagtc
     3541 tatcgccgca ccagggcggt caacgtcaaa cccgagccag aacatcgcgt gtggctggtt
     3601 gaactggata tatttcgcaa gaatggcgcg ctctttcccg gcaatgcgta cgccgaactg
     3661 gagttcgtcg gtaaaatagg gtttgcgggg aagccgctcg ttaaaaaggt cgagtgcctg
     3721 gttagtcaat ctcgcctgcg cttatggcgg gctgttgttt cgcacggttc atgtgctagt
     3781 atccttctta ggttttgtgc ctgcgccctc gttaatcatg tccttccgcc aagtcgagca
     3841 tgattacggg ggcgtcgtct tttctgccgc ttaacgttac acaccccgcc gtattttgtc
     3901 acctgtcacc gtcagttatt gcctgaagca acagaccatt accttccggg taaaaaacgc
     3961 gtacactggc aacacgtgct atatacacgt gtaaaaatca ggagatcatc atgcccgtat
     4021 cagcgatgcg ccataaaaaa accgtcagtg tgacaatcga gcctgcgctt ttgcatcagg
     4081 cccgcgaagc cgggattaat ctgtctgcca cgctcaccac cgccctgaaa catcagatcc
     4141 gcgagtcaga agcggagcgc tggaaacgcg ccaaccgcaa ggcaatccag gagctcaacc
     4201 gtattacgga cgagcacggc ttactctctg acgatcacag gacgttctga tgcagttcat
     4261 ggtttaccgc aataacagca acaaccgggc ttatccctat ctgctcgatg tacagagcga
     4321 tattatcgac gaactgaata cccgcctggt gatcc
//
