LOCUS       NZ_CP138812             4842 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 11383 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP138812
VERSION     NZ_CP138812.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040185
            Assembly: GCF_033854795.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4842)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4842)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:43:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,043
            CDSs (total)                      :: 5,921
            Genes (coding)                    :: 5,721
            CDSs (with protein)               :: 5,721
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 200
            CDSs (without protein)            :: 200
            Pseudo Genes (ambiguous residues) :: 0 of 200
            Pseudo Genes (frameshifted)       :: 80 of 200
            Pseudo Genes (incomplete)         :: 127 of 200
            Pseudo Genes (internal stop)      :: 39 of 200
            Pseudo Genes (multiple problems)  :: 36 of 200
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138812.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4842
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="11383"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-05"
                     /collected_by="He Fang"
     gene            238..489
                     /locus_tag="R8562_RS30105"
                     /old_locus_tag="R8562_30095"
     CDS             238..489
                     /locus_tag="R8562_RS30105"
                     /old_locus_tag="R8562_30095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016241876.1"
                     /translation="MKIVLSVSKCLYINDLDRLLPCDRFFVHLDYKDISKNESFEMNRH
                     DKESYKLIIDKIVGNEVMLAIDEDIYSEVVENLTLLLK"
                     /name="hypothetical protein"
     gene            509..682
                     /locus_tag="R8562_RS30110"
                     /old_locus_tag="R8562_30100"
     CDS             509..682
                     /locus_tag="R8562_RS30110"
                     /old_locus_tag="R8562_30100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016241875.1"
                     /translation="MIIAIGMMLLCIMLGGFMIRSCMGKTNSSSEAKQSISDVRKIIDK
                     KELIKYKRRNQR"
                     /name="hypothetical protein"
     gene            679..948
                     /locus_tag="R8562_RS30115"
                     /old_locus_tag="R8562_30105"
     CDS             679..948
                     /locus_tag="R8562_RS30115"
                     /old_locus_tag="R8562_30105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016241874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_150316402.1"
                     /translation="MIMEYEMKLNVLARFFYYIEQAKDIPFDYSSYDEQGLCYFVANRY
                     INENKADDLIQALIDTNDDDYIKAIRDYVQYTALNEVRKKYEDR"
                     /name="hypothetical protein"
     gene            935..1306
                     /gene="mobC"
                     /locus_tag="R8562_RS30120"
                     /old_locus_tag="R8562_30110"
     CDS             935..1306
                     /gene="mobC"
                     /locus_tag="R8562_RS30120"
                     /old_locus_tag="R8562_30110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_064374444.1"
                     /translation="MKTDRKRGRIELNHEVRRDISIQFRVNKAEFEYLKELVEASGLER
                     GHYIRREILNSEPIVKRKMPDFEQSLYKEIQHQGNNINQIAKKLNTNEDFKQSVAAEAN
                     FAIKQLMKRILKACEVYTI"
                     /name="mobC"
     gene            1303..2793
                     /locus_tag="R8562_RS30125"
                     /old_locus_tag="R8562_30115"
     CDS             1303..2793
                     /locus_tag="R8562_RS30125"
                     /old_locus_tag="R8562_30115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000678150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_301717673.1"
                     /translation="MKGNVAKPGRSFKNRVDYILKDDHDFICSNMASDYNNVSDLTDEF
                     KTVSSFRQDIKKPVFHAFLSLPKNEHLTDEQWQEIAKDYLKEMNIDIDKHQYICVRHND
                     TDKEHIHIVANRVGLDGSVWLGQHSAFNTIAACERLEVKHGLTITDGLKGQKSEVSAPT
                     KNEIEQALRTGEKPARIVLQNALQAAMVGKPDLETFIDRLQAVGIEAAFNVASTGNVAG
                     VSFGIKNNEKNIYFKGSQLGKKYSWNTIKNKVIYDKNRDDELVRRFAARKTDDENSIRR
                     SPTEPDFNDSRAVDRIDDDTIGVSQHGIKPDTTDTNQSEQLIRSNNNRFKLSEKYNRPA
                     SHKVRRTTQKAAQILNRVKKQYNKEPIKTYNKNGLNSWRDKSDSGSIGRILDHAETANA
                     ATHSFRLKGRGSFNSRATKIEEIRDKLGIKKPVIQPKNKEKVIEKEIKKKPLGLSMNEN
                     RFKSKLKEALKKEKPKNETTPLQQEDDQHLKPRGFKPR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2802..3077)
                     /locus_tag="R8562_RS30130"
                     /old_locus_tag="R8562_30120"
     CDS             complement(2802..3077)
                     /locus_tag="R8562_RS30130"
                     /old_locus_tag="R8562_30120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="WP_224373719.1"
                     /translation="MTALHTVKRNKTAKEMAQRLNISDRTVRKLIALPREDYEKEAKQR
                     RLKAFVLRESGMKWADVGIALGTTKHGAIALYKRYQQIDAPTTKEA"
                     /name="HTH domain-containing protein"
     gene            complement(3081..3947)
                     /locus_tag="R8562_RS30135"
                     /old_locus_tag="R8562_30125"
     CDS             complement(3081..3947)
                     /locus_tag="R8562_RS30135"
                     /old_locus_tag="R8562_30125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000481810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_057483990.1"
                     /translation="MFKIENNKDILKSQMPLKPYATNDLEFGLTIQNKNKALDMLYLQV
                     NHPLYLHTMIFDLDKENCFYEFENAHLPIPSFITKSPDSGRCHYGYMLNAPITSTEKSR
                     QKPVKFARALYYNMATRLGADLGYAGLITKNPLNPHWSPYWSDADLYELNDLADCFDDL
                     EDPKKRENTELAFGRNVEIFDTQRQWAYKNVLKYKNESSFDAFYKELLLKCETFNSFAN
                     YNNLLPYKELVSTAKSIAKFCWKEFSNEKLHDIQSKKQKARRSKRTEKQKLHTKTLLEK
                     AIMINEE"
                     /name="replication initiation protein"
     gene            4248..4463
                     /locus_tag="R8562_RS30140"
                     /old_locus_tag="R8562_30130"
     CDS             4248..4463
                     /locus_tag="R8562_RS30140"
                     /old_locus_tag="R8562_30130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001171587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_224373721.1"
                     /translation="MQKTKRRLGFMVGKSNATLPPDDETEAELDQEVLKLFYPNQETQD
                     TIERSEAGTDVFMASGSDDLFKKLKL"
                     /name="hypothetical protein"
ORIGIN
        1 gacaaacttt ttagatcggt tatttattta aatataggtt gagttcagct ttatttttat
       61 cttttcggaa actgaggcaa ggtgtaatag cgtatccgct attttaccca atcctatcgg
      121 attgccttgt ctcgtttcac tcgcaaggtt gaaaaagatc tacccttccg cttatttccc
      181 ctatcaaggg gaagcggtaa accatagtta gatattataa atataggaga aataaatatg
      241 aaaatagttt tatcagtatc aaaatgttta tacataaacg atttagatcg cttacttccg
      301 tgtgatcgtt tttttgttca tttagattat aaggatatta gcaaaaatga gtcatttgag
      361 atgaatagac acgacaaaga aagctacaaa cttatcattg ataagattgt aggtaatgaa
      421 gtaatgcttg ctattgatga agatatatat agcgaagttg tcgaaaactt aactttatta
      481 ttaaaatgag gcttatggag attaatatat gattatagca ataggaatga tgcttctttg
      541 tattatgctc ggtggtttca tgatccgtag ttgtatggga aaaacaaact cttcaagtga
      601 agcaaagcaa tcaatatcag atgttagaaa aataatagat aaaaaagaac tgattaaata
      661 caaaagaagg aaccaaagat gattatggaa tatgaaatga agcttaatgt gttagcacgt
      721 tttttttatt atatcgagca agctaaagat ataccttttg attactcaag ctatgacgaa
      781 caaggattat gttattttgt agctaataga tacattaacg aaaataaagc tgatgatctt
      841 atacaggcat tgatagatac taatgacgat gattatataa aagctataag agattatgtt
      901 cagtatacag ctttaaatga agtgagaaag aaatatgaag acagatagaa aaagaggacg
      961 tatagagtta aatcacgaag tacgtagaga tatatctata cagtttagag taaacaaagc
     1021 agagtttgaa tatttaaaag aacttgttga ggcgtctggc cttgaaagag gtcattacat
     1081 tagaagagag attttaaact ctgaacctat tgttaaaaga aaaatgccgg attttgagca
     1141 atcattgtat aaagaaatac aacatcaagg taataatata aatcagattg ctaaaaagct
     1201 aaatacgaat gaagacttta aacaatctgt agccgcagaa gctaactttg ctataaagca
     1261 acttatgaaa agaatattaa aggcttgtga ggtttatacc atatgaaagg aaatgtagca
     1321 aaacccggaa gatcatttaa aaatagagtt gattacattc ttaaagatga ccacgatttt
     1381 atatgtagca atatggcaag tgattataat aatgttagtg atttaactga tgagtttaaa
     1441 actgtaagca gctttagaca agatataaaa aaaccagtat ttcacgcttt tttatctctt
     1501 ccaaaaaatg aacatttaac agatgaacaa tggcaagaga tagcaaaaga ctatttgaaa
     1561 gaaatgaata ttgatataga caaacatcaa tatatttgtg ttcgtcataa cgatacagat
     1621 aaagaacata tccatattgt agctaatcgt gttggccttg atggttctgt atggctcggt
     1681 cagcactcag catttaacac aatagcagct tgtgaacgtt tagaagtaaa acacggctta
     1741 accatcacgg atggcttaaa aggtcaaaaa tcagaggtat cagcaccaac caagaacgag
     1801 atcgagcaag ccttgaggac aggtgagaaa ccagctcgta tcgtgctaca gaacgcatta
     1861 caggcggcta tggtaggaaa accagatctt gagacattca tagacagact gcaggctgta
     1921 ggcatcgagg cggcctttaa cgttgcaagc actggcaacg tcgccggggt gtcgtttggt
     1981 atcaaaaata atgaaaaaaa tatttatttc aagggatctc agttgggtaa aaaatacagt
     2041 tggaacacta taaaaaacaa ggtgatatat gacaaaaata gagatgatga acttgttaga
     2101 agattcgcag caagaaaaac agatgacgaa aatagtatta gacgatcacc tactgaacca
     2161 gatttcaatg acagtagagc cgttgacaga atcgatgatg atactatcgg agtcagtcag
     2221 cacggcatta aaccagacac aacagacact aaccagagtg aacaactcat tagaagcaac
     2281 aacaaccgct ttaaactcag cgaaaaatat aatagaccag caagccataa agttagaaga
     2341 acaacacaaa aagctgcaca aatactcaac agagttaaaa aacaatacaa taaagaacca
     2401 atcaaaactt ataataaaaa tggcctcaat agttggcgtg ataaatctga tagcggttct
     2461 attggtagga tacttgatca tgcagaaaca gccaacgcag ccacccattc atttagactc
     2521 aaaggccgtg gcagtttcaa tagtagagca actaagatcg aagagataag agataaactt
     2581 ggaataaaaa aaccagttat tcagccaaag aataaagaaa aagtgattga aaaagaaata
     2641 aagaaaaaac ctttaggatt aagcatgaat gaaaatagat ttaaatcgaa gttaaaagaa
     2701 gctcttaaaa aagaaaaacc aaaaaatgaa acaacaccac tacagcagga agacgatcag
     2761 catttaaaac caagaggttt taaaccgcga taaaagaggc tttaagcctc ttttgttgtt
     2821 ggtgcgtcta tttgttgata acgtttataa agagctatag caccgtgttt tgtagttcca
     2881 agagcaatac caacatctgc ccatttcatc ccgctttcac gtaatacaaa ggcttttaat
     2941 cgtctttgtt ttgcttcttt ctcatagtct tcacgaggta aagcaatcaa cttcctgacg
     3001 gttctatcac tgatatttaa tctttgagcc atttctttgg ctgttttatt cctttttacc
     3061 gtatgtaatg ccgtcatatt ttactcctcg ttaatcatta ttgctttttc taaaagtgtt
     3121 ttagtgtgta gcttttgttt ttctgttctt ttagatcttc ttgctttctg ttttttactc
     3181 tgaatatcat gaagtttttc gttactaaat tctttccagc aaaacttggc tatacttttt
     3241 gctgttgata caagttcttt gtaaggtaat agattattat agttagcaaa gctattaaat
     3301 gtttcgcatt tcaataataa ctctttataa aatgcatcaa atgagctttc attcttatat
     3361 tttagcacgt ttttataagc ccattgcctt tgtgtatcaa atatttcaac attgcgacca
     3421 aaagctaact ctgtattttc tcttttcttt gggtcttcca aatcatcaaa acaatcagct
     3481 aaatcattta gctcatataa atcagcatct gaccaataag gcgaccaatg aggatttagc
     3541 gggttttttg taatcagtcc cgcataaccc agatcagcac caagacgagt agccatattg
     3601 taatataatg ctctggcaaa ctttacgggc ttctgtctgc ttttctctgt tgatgttata
     3661 ggagcattaa gcatataacc gtagtggcaa cgtccactat cagggctttt agttataaaa
     3721 gacggtatag gtaaatgggc attttcaaac tcgtaaaagc agttttcttt gtctaaatca
     3781 aatatcattg tatgaagata aagcgggtga tttacttgta gataaagcat atctaaagct
     3841 ttattcttat tttgaatagt caatccaaac tctaaatcat ttgtagcata tggctttaaa
     3901 ggcatttgac tttttaatat atctttgtta ttttctatct tgaacatata gcagtatcct
     3961 ttctgtaatg ccccgttctc tcactggtcg ccaaactaat cagagaacgc gggcttttct
     4021 tttatttata atctcttaca gttttactat atcaaaatat cttgtcaata gatccgtcaa
     4081 aaaaagttgt taagtaggaa gtctaccaat atcaggtatt agacggagtt ttggggatcc
     4141 tacaccacag cgaagcacag gccgaaggcc atctacagag taagtcacac tgtaacgtat
     4201 actaaactct atgtaagatc tggctgtgct ggataggaga gcatgatatg cagaaaacaa
     4261 agcgtagact cggctttatg gttggtaaga gcaatgcaac attgccacca gatgacgaaa
     4321 cagaagcaga gcttgatcag gaagtcctga agctgtttta tcctaaccaa gagacacaag
     4381 acactataga acgctcagaa gccggtacag acgttttcat ggcctccggt tctgatgacc
     4441 tgttcaaaaa actgaagctg tagggcaggg gagagccggc catcttcacc agtagaacaa
     4501 accgacccgg aacggtgaga gaaggccaac cctcgatgca gtatatacta tactaatata
     4561 tactatagtc tgttgatttt atgagcattt caaacacata gacgccagca acagcagaaa
     4621 agcgagtttt ctactgttct gtcgccgccg atcaaacccc attccttaaa atctgcctac
     4681 caagtggtca cgaacttttc cagatttcac gtagcagcgg cattttttac gcaaagctac
     4741 ctattacgca cagctaccca tcaagacaat atattattta ccctattttt tatttgcatt
     4801 ttatttgttg tgcagggtat ttatttatgt agccgctata tt
//
