LOCUS       NZ_CP138811             5459 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 11383 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP138811
VERSION     NZ_CP138811.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040185
            Assembly: GCF_033854795.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5459)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5459)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:43:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,043
            CDSs (total)                      :: 5,921
            Genes (coding)                    :: 5,721
            CDSs (with protein)               :: 5,721
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 200
            CDSs (without protein)            :: 200
            Pseudo Genes (ambiguous residues) :: 0 of 200
            Pseudo Genes (frameshifted)       :: 80 of 200
            Pseudo Genes (incomplete)         :: 127 of 200
            Pseudo Genes (internal stop)      :: 39 of 200
            Pseudo Genes (multiple problems)  :: 36 of 200
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138811.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="11383"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-05"
                     /collected_by="He Fang"
     gene            complement(276..866)
                     /locus_tag="R8562_RS30065"
                     /old_locus_tag="R8562_30055"
     CDS             complement(276..866)
                     /locus_tag="R8562_RS30065"
                     /old_locus_tag="R8562_30055"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032752184.1"
                     /translation="MMTFDHGDGQLEFEGATLTLDHLKNRKITIQIDETSALVAEISCS
                     SHCYTDETPFTTTLLEIRDHYGNKRYFCPKRYELSKNIHTWLENCANEICIKSVLPSGT
                     IHWLIIEDHDSGEKVSIVFEIEKHKSIDNAVYMMVKAVHAFDRKPPPNPSERDVTFKVV
                     GSSYAKNDEAPPRAKKKRNRKRKRSTAETKKDS"
                     /name="hypothetical protein"
     gene            complement(963..1625)
                     /locus_tag="R8562_RS30070"
                     /old_locus_tag="R8562_30060"
     CDS             complement(963..1625)
                     /locus_tag="R8562_RS30070"
                     /old_locus_tag="R8562_30060"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_048023464.1"
                     /translation="MKALVIFGSTARNERSFDSDIDMLGVYDKEKILSVSKESVSLFLY
                     PETTLREKMVSGDLFALHLVKESIPIYGSDIIKDIYGSFKYKESYIVEINTALKVSTEI
                     LSIYDKLRQHKSANKKIAWCLRTIIISISAQDRTPIFSKKKLSEYIKVTGFDSREILML
                     INIKSISKKLPSRIINRISCLFNELYIYSDFHNYSYKQDILYQMLHDIDRNNNSINY"
                     /name="hypothetical protein"
     gene            complement(1644..1907)
                     /locus_tag="R8562_RS30075"
                     /old_locus_tag="R8562_30065"
     CDS             complement(1644..1907)
                     /locus_tag="R8562_RS30075"
                     /old_locus_tag="R8562_30065"
                     /inference="COORDINATES: protein motif:HMM:NF020550.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1883 domain-containing protein"
                     /protein_id="WP_071571085.1"
                     /translation="MQYQHYNLNNLSAGKVVEINLSGNAANVKLMDSSNFLNYKNGRPH
                     RYYGGYVTSSQTRLKVPCSGNWYVTIDLGGRSGRVSSSVNVY"
                     /name="DUF1883 domain-containing protein"
     gene            complement(2053..2223)
                     /locus_tag="R8562_RS30080"
                     /old_locus_tag="R8562_30070"
     CDS             complement(2053..2223)
                     /locus_tag="R8562_RS30080"
                     /old_locus_tag="R8562_30070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018280556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086544399.1"
                     /translation="MAVNPPNDNRRIGMVRQRSQVFNPTTDTWVKRDSTTGRFMDVKSD
                     GTPFKGVRKEK"
                     /name="hypothetical protein"
     gene            2412..3305
                     /locus_tag="R8562_RS30085"
                     /old_locus_tag="R8562_30075"
     CDS             2412..3305
                     /locus_tag="R8562_RS30085"
                     /old_locus_tag="R8562_30075"
                     /inference="COORDINATES: protein motif:HMM:NF024676.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="WP_032752185.1"
                     /translation="MLLTSFNDILKEDQTLAIRLAFIDFKVFYTGMLSRIDIMNEFDVS
                     EITASRVISQYREFRRGNISYDNKSKRFELKKDTYEPLVKFNAKDALRMLSEGFDKNYL
                     IRGRGFIPYEPIGFIQPPLENSFVSIITRAIAAGKKIKCQYNSATSNDSSYRVLSPLVI
                     LFDGRNWIFRAYHENSTSDVKYKNFNFARVVDVLSDDEFVDYEHGLAYDDLWNITLPVE
                     IEINKSFSDVKKNEVRRDFGIKDGADKVLMTERAAFIWIILNQWMVHYDDGKKMTDDYI
                     FCLKNAEMLRTYKAIR"
                     /name="WYL domain-containing protein"
     gene            complement(3618..3761)
                     /locus_tag="R8562_RS30090"
                     /old_locus_tag="R8562_30080"
     CDS             complement(3618..3761)
                     /locus_tag="R8562_RS30090"
                     /old_locus_tag="R8562_30080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_077254526.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAAIGKSRCARDLE
                     ST"
                     /name="replication initiation protein"
     gene            4177..4368
                     /locus_tag="R8562_RS30095"
                     /old_locus_tag="R8562_30085"
     CDS             4177..4368
                     /locus_tag="R8562_RS30095"
                     /old_locus_tag="R8562_30085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4368..4769
                     /locus_tag="R8562_RS30100"
                     /old_locus_tag="R8562_30090"
     CDS             4368..4769
                     /locus_tag="R8562_RS30100"
                     /old_locus_tag="R8562_30090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_009310048.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(3653..4056)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.556"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ccctgaggcc gttttagcgg tgcgtacaat tagagtgtta tgttaaatgt tgttcttgtt
       61 gattagtatg caaaacgtag tgtcagcgta tgaagcctca cttcggagat ctttattgta
      121 gagttgacag gtggcgtcat ttttctgata ctactaggta gatggatgtg agcggggact
      181 ctaaagagta ttccattagc cacctaagag taattcttag gcctcagaca cctgagatat
      241 gaagtgcacc cgaagcttta aacgaaaaaa gactcctagg agtctttttt cgtttctgct
      301 gtagagcgtt ttctctttct atttcttttt ttcttggctc tcggcggtgc ttcatcgttc
      361 ttggcatagg aagaacctac caccttgaaa gttacatctc gctcacttgg atttggcggg
      421 ggttttctgt caaaagcatg aacagcctta accatcatgt atacagcatt atcaatactt
      481 ttatgtttct caatctcaaa cacaatgctt actttttcac cagaatcatg atcctcgatg
      541 attaaccagt gaatggttcc acttgggagt acgcttttta tacatatctc atttgcgcaa
      601 ttttccaacc aagtatgtat gtttttgctt agctcatatc ttttggggca aaagtaacgt
      661 ttgttaccgt agtggtctct aatctcaagt aaagttgtcg tgaatggtgt ttcatccgtg
      721 tagcaatgtg agctacacga aatttccgcc actagtgcag atgtctcatc aatctgtata
      781 gttatttttc tattttttag gtgatctagg gtgagtgttg ctccctcaaa ctctaattgg
      841 ccatcaccgt gatcaaatgt catcatgtca tttgcccatt tttggactgt tcttagttca
      901 tgctattgtg caatgtataa tttagatttg cactagcttc ttttcataat gtaagcttgt
      961 ttttagtagt ttatgctatt attatttcta tcaatatcat gtagcatttg gtatagaata
     1021 tcttgtttat aactatagtt atgaaagtcg ctatatatat atagttcgtt aaataaacat
     1081 gaaattctat ttattattct acttggtaat tttttactta tgctttttat attgatgagc
     1141 ataagtattt ccctagaatc gaatcctgtt acctttatat actcggatag tttttttttg
     1201 gagaaaatag gggttctatc ttgtgctgat attgaaatta ttatcgtgcg taaacaccat
     1261 gcgatttttt tattggcact cttgtgctgt cttaatttat cgtaaattga taatatctcg
     1321 gtggaaactt tgagtgcggt atttatttct acgatgtaac tctctttata tttgaatgag
     1381 ccgtatatgt ctttgattat atcagagcca taaattggaa ttgattcttt tactaggtgg
     1441 agtgcaaata aatcaccaga aaccattttt tcgcgtaagg ttgtttctgg atataaaaaa
     1501 aggctcacgc tctcttttga aacagatagt attttttcct tgtcatatac accaagcatg
     1561 tctatatctg aatcaaaaga cctctcattt ctagctgtgc tgccaaaaat tactaatgct
     1621 ttcatgagag gccttttata aggttaatat acgttaacac ttgagcttac gcgaccactg
     1681 cggccaccta aatctatggt tacgtaccag ttaccggagc aaggaacttt aagccttgtc
     1741 tgcgaggatg ttacgtatcc gccataatag cgatgcgggc ggccattttt atagttcaag
     1801 aagttgctag aatccattag cttaacgttt gcagcatttc cggaaagatt gatttcaact
     1861 acttttcctg ctgaaagatt gttcagattg tagtgttggt attgcataat gtggtctctt
     1921 gtataaggag actgttgacc taaattcaaa aaattgagat tgtagtcaac agcctgctag
     1981 ggttaagcac ttaacttccc caagaaagtg cattcaaacg aaataaagcg gattgtcgta
     2041 agacaatccg ctttattttt ccttccttac gcccttgaaa ggcgtaccgt cagattttac
     2101 atccatgaag cgcccggtcg ttgagtcacg ctttacccag gtatcagtcg ttgggttgaa
     2161 aacctgtgaa cgctgacgaa ccatgccaat tcgacgatta tcattaggtg gatttacagc
     2221 catttcagcc tccttaaggc tttctgtgaa ggaggtattt ccttcgacag ataccaatgt
     2281 aaacctgttt ttttcgattg tcaaccgata tgggtggtgt tgtgtgtact gaatgcatat
     2341 caaaaagata tgcgttttgc aggttgttta tgctagaata gttatgttta tgcattagat
     2401 aaggttgcat catgttactt acttcattca atgacattct taaagaagac caaacattag
     2461 ctattagatt ggcatttata gatttcaaag ttttctatac tggaatgtta tcaagaatag
     2521 atattatgaa tgagtttgac gtctccgaga taacagcttc aagagtgatt tctcaataca
     2581 gggagtttag aagggggaat atatcgtatg ataataaaag taaaaggttt gaattaaaaa
     2641 aagacacata cgagcctttg gtgaagttta atgctaaaga tgcgctgaga atgctttccg
     2701 aagggtttga taaaaattat ttgattaggg ggcgtgggtt tattccttat gaacctattg
     2761 gttttattca gccacctctt gaaaactcct ttgtttcgat aataactaga gctattgccg
     2821 caggaaaaaa aattaagtgc caatataact ctgctactag caatgattct tcttatagag
     2881 ttctttctcc gcttgttatt ctttttgatg gcaggaattg gatatttaga gcctaccatg
     2941 agaattcgac cagtgacgta aagtataaaa actttaactt tgctcgtgtt gtcgatgtct
     3001 taagtgatga tgagtttgtt gattatgaac atgggcttgc atacgatgat ttatggaata
     3061 taacactccc tgttgaaatc gaaataaata agtcatttag tgacgttaaa aaaaacgaag
     3121 tgagaagaga ttttggtatt aaagatgggg ccgataaagt gttaatgacg gaaagagctg
     3181 ctttcatttg gattatatta aatcaatgga tggtgcatta cgatgatgga aaaaaaatga
     3241 cagatgatta tattttttgt ctgaaaaatg ctgaaatgct acgaacttat aaggctatta
     3301 gataactgta tttgtgggca tgtttggttt ttttgattga gatgtgattc gttaagtgag
     3361 ttaagtttat gtgaggatta tttctatagt gatgtaaatg gattgtacgc tctttttttg
     3421 ggtagatcct tggaagatct tcttgagatc attgctgtca gcgcgtaatc tcttgctctg
     3481 aaaacgaaaa aaccgccttg cagggcggtt tgatcgaagg ttaagccagc ttgcaggctg
     3541 cttaaccagg taactgtctt gtgcgagacg agtcaccaaa actgtccttt cagtgtagcc
     3601 gcagtcaggc caccacttca agtactctct aaatctctcg cacatcgact cttaccaatg
     3661 gctgctgcca gtggcgcttt tgcgtgtctt tccgggttgg actcaagacg atagttaccg
     3721 gataaggcgc agcagtcgga ctgaacgggg ggttcgtgca tacagtccag cttggagcga
     3781 actgccttcc cggaactgag tgtcaggcgt ggaatgagat aaacgcggcc ataacagcgg
     3841 aatgataccg gtaaaccgaa aggcaggaac aggagagcgc acgagggagc catcaggggg
     3901 aaacgcctgg tatctttata gtcctgtcgg gtttcgccac cactgatttg agcgtcagtt
     3961 tctgtgatgc ttgtcagggg ggcgaagcct atggaaaaac ggccgctgtg cggcctttcc
     4021 ttttcccctt cacgcgaccg ctcggtttcc tcgagctatt atacgcatgc tcctgccgct
     4081 cgccgcagcc gaacggcagg agcgtagcga ctgagtgagc gaggaagcgg aaaagaggag
     4141 atccctacac tgaccactga cgctctgagg cctcttatga cgaaacaaca gaaaacagcg
     4201 ctgaacatgg ctaaattcat ccagaatcag tctctgctcc tgctggagaa gcttaacgag
     4261 cttgatctcg atgttgaggc cgacctttgt gagaaactcc acgatgatgc ggagcatctt
     4321 ttccgtacac tgtcctcgag actggatgca ttacaggatg gtaactgatg gccagagtgt
     4381 ctattagtga ggctgcccga ctgacgggta agagtagaac aacactgcac aggttaatta
     4441 aagcaggtga cctgtccacc tgtagcggtg aacgcaatgc aaaaatggta gatacttcag
     4501 agcttttacg tgtctttggt ccctttgaac aaccgaaggg tgaacaccat tctggacagg
     4561 tctctgaaca gcgtgataca gcctctgctg accagagtga acaggtgatt cgtcatctga
     4621 aacaggagat tgaacacctg aacaccttac ttttgtccaa ggattcgcac attgacagcc
     4681 tgaaacaggc catgctcctt cttgaaaatc accaggcaaa attaactgaa tccccggcgc
     4741 catggtggaa attctggaaa aaatcctgac cccgtcatgc ttcagttttc ctctcaggcc
     4801 atcccgggga gttcctgaac cttcccaaaa attgccagat ctctgaacgc tcctcaccac
     4861 taaaaatacc cacaccccac gcaaaattaa aattttgcag atttgtattt aatatcagca
     4921 gtttacttta ctgaaatttc gttttttaaa ttttatttat atagatccga ctctatgacg
     4981 agtcgtcata gagtccccgg cgagtcgtca tagagtcggt gacgactcag cactataaaa
     5041 acaatgagtt aataacgacc cgactctaga cccgactccc cgtttggttg ttttttagtc
     5101 gcggcgactc tgggtacgac tctagtgcag agtcgccggt gaatcgtgtg gtgagtcgtc
     5161 cggcgacttg ccataacgtg attgccggcc gtcgacgaac ccgattcctg atcgtgctga
     5221 aaaccggttt tccggctgcg ccggcaacgc ttcacggcca cgcaataaat tgcgtccccg
     5281 ttcaccgttt tcggatggaa agaacgccgg aaacagaact taccctggct gaatggtgtc
     5341 aatttccgcg ctatgcactt gcgcgcatac tcatgcatgc cgtaaaaaca gagcctgcgc
     5401 gtttctggcg ggttttcggg tggtttgttg cctgttttac cggtttcccg tcagaaacg
//
