LOCUS       NZ_CP138801             2058 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain T14441 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP138801
VERSION     NZ_CP138801.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040202
            Assembly: GCF_033869935.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:36:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,856
            CDSs (total)                      :: 5,733
            Genes (coding)                    :: 5,549
            CDSs (with protein)               :: 5,549
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 69 of 184
            Pseudo Genes (incomplete)         :: 125 of 184
            Pseudo Genes (internal stop)      :: 34 of 184
            Pseudo Genes (multiple problems)  :: 39 of 184
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138801.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="T14441"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021"
                     /collected_by="He Fang"
     gene            268..459
                     /locus_tag="R8553_RS29275"
                     /old_locus_tag="R8553_29275"
     CDS             268..459
                     /locus_tag="R8553_RS29275"
                     /old_locus_tag="R8553_29275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            783..1772
                     /locus_tag="R8553_RS29280"
                     /old_locus_tag="R8553_29280"
     CDS             783..1772
                     /locus_tag="R8553_RS29280"
                     /old_locus_tag="R8553_29280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          complement(1499..1690)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 ggagtaccgc catcacgatg ccggtaccaa aaacgatccg tcagggctgc gccccgacac
       61 cctgccaaca cctcacgccg ccagattaaa atctgtcagc gttcgccgtt cccgaaatcg
      121 tcaaacgcta aatcgcgggg tcccgctggc ttgccagtgg gttccgattt agtgattgac
      181 gacagcaccc gtaaaatact tacagggggt ggttgtgatc acgcagtgag cgcaaccacc
      241 tgataagcgt tttttgaggg ggtaggcatg atcgtcagac tggataaccg gctgtttgag
      301 attctcgatg agatgggtgc gcatgtggat cgggaaatgt tcatggcggc ctatgcgcag
      361 cggaaggccg aaaaagaaaa tgatccccgg catatccgtc aacggaaact gaccaggttg
      421 gctcatgatt tgatgtcaga atcggaccct gaattgtgag cctcgcgtgc gcgcgaggga
      481 aatcggtcag aaaatggccg gagtctcgtg cgcgcgatcc ttgtatttat acttaaggga
      541 taactctggc gtcaaaaaac gccgccagcc cttgtgccgc aagggtttga gtgtgatttg
      601 cctgaaaatg gttttggaag tattctgtcg ggagtggtcg cagaaaaaag cgacccccgc
      661 aactgcgcta acagttcggg ggtgtgacca cctgtaggaa ttcgaatttg gacacgacaa
      721 cacaggtgat atggcaatga taacacgtca aatgagccat cgcccagcat ggggcggtgt
      781 gcatgcaaaa tcctgaactc cagaacctaa ctgactactc cccctcagat gcgccgtggg
      841 acgctcacag aagcgtttct gacgacgtgg gagggattta cctgcttgcg gctgaatatg
      901 agcgctacgg ggcgcgtatg gcctcctgtg gcggtttact gaggtttggg tggtctaccc
      961 tcaaagaaac cggagaaacg cgcctgaggc tgcgtgaggc gcatttctgc cgtgtccggc
     1021 actgtcctgt ctgccagtgg aggcgctccc tgatgtggca agcccgtttc taccagtccc
     1081 tgccgcgtat cgtggcggat taccccgatt cccgctggat gtttctgacc ctgaccgtgc
     1141 gcaactgcgc gatcgaggag ctgggcgaga cgctgagccg gatgaacacg gctttccagc
     1201 gactgaagga ccgtaaagag ttccgaccag ttcagggctg gatacgcacc acggaagtca
     1261 cccgcggcag tgacggcagc gcacacccgc acttccacac cctgatgatg gttccgccgg
     1321 gcatgcttaa cgggaagagt tacgtcaggc atgaacgctg ggttgagctg tggcgtgagt
     1381 gcctgcgggt cagttacgat ccgaatgtcg atgtccgggc agtgaaaccc cgcaagccga
     1441 aggacggcga atcgctggcc tgcgcgaccg ccgaactggt gcgcggcgca gtggccgaaa
     1501 ccctgaaata ttccacgaag ccggccgaca tggtggccga tcctaaatgg ttcctcgaac
     1561 tgacccgcca gacgcacaag cgccgctttg tggcgaccgg cggcgcactc aaagacgtgc
     1621 tgaaactcga tcaggaaacc gacgccgaca tggtgatcgg ggatgatatt tccgagggcg
     1681 atgatgacgg ttcccgcatc gcgttcgagt ggaagaccga ggtcaaaaag taccggcgtt
     1741 cgccgacgaa agataaaacc gaatcagact aacagggtgt cggggctgcg ccctgaccat
     1801 gagggctttg ggcatccgtc accttggtgg cggtgtacca aagtcacatc ttgtccgatt
     1861 gattttactc cgatgcagga tagggctaac gccgcaaagt gacgtcactc gattactgag
     1921 ttcggattcc gaacctgggt ttttcttccg gtaattttcc ggaaggcgcg cttagtagtt
     1981 tctcatctgg cgatgagaaa cgcgcggtgg ggcaagccca cgaaaaacaa aaactgataa
     2041 cggacaagat gtgttttt
//
