LOCUS       NZ_CP138793             1955 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain T24441 plasmid unnamed10, complete
            sequence.
ACCESSION   NZ_CP138793
VERSION     NZ_CP138793.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040201
            Assembly: GCF_033869415.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:44:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,873
            CDSs (total)                      :: 5,750
            Genes (coding)                    :: 5,564
            CDSs (with protein)               :: 5,564
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 70 of 186
            Pseudo Genes (incomplete)         :: 126 of 186
            Pseudo Genes (internal stop)      :: 34 of 186
            Pseudo Genes (multiple problems)  :: 39 of 186
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138793.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="T24441"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed10"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021"
                     /collected_by="He Fang"
     gene            560..796
                     /locus_tag="R8540_RS29360"
                     /old_locus_tag="R8540_29355"
     CDS             560..796
                     /locus_tag="R8540_RS29360"
                     /old_locus_tag="R8540_29355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_094319700.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNKARAQ
                     IELQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            1058..1270
                     /locus_tag="R8540_RS29365"
                     /old_locus_tag="R8540_29360"
     CDS             1058..1270
                     /locus_tag="R8540_RS29365"
                     /old_locus_tag="R8540_29360"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_039509481.1"
                     /translation="MGDFERTYGAGADFDRIIDENNSEYFRDERQKAKNSKKEFSSFQD
                     ALVWAKANPGKTIVRSPDGVGFIEK"
                     /name="hypothetical protein"
     Typing          223..406
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.166"
                     /coverage="86.0"
                     /evalue="2.69e-52"
     Typing          complement(2..240)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.553"
                     /coverage="92.0"
                     /evalue="5.35e-58"
     Typing          complement(1508..1955)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.535"
                     /coverage="89.0"
                     /evalue="3.810000000000001e-129"
ORIGIN
        1 taccaggggg aaacgcctgg gatctttaag tcctgtcggg tttcgccgcc actgatttga
       61 gcgtcagatt tcgtgatgct tgtcaggggg gcggagccta tggaaaaacg gcaacgccgc
      121 atccttttcc cagcccttcc tgacttctct ctatctgcta tttcgttatt tgtaagcccg
      181 taacgcccgc cgcagcctca cggcaggagc gtagcgaccg agtgagcgag gaggcgtcat
      241 gtcatcgcca tctgcatttc gcacttacgc cccgcagccg catttttctc ctgccacatg
      301 aagcgcttcc ctgaatcacc actccgaact aatatattaa gccagtatac actccgctag
      361 cgctatgtga ctggttcagg gctgcgcccc gaaacccgct aaaaccactg acgcgcctgc
      421 ggcttgccca acgtctcacg tcaccggatt aaaatccgct cccgttcacc gtttctggct
      481 gtctttcagc accgccagcg cttcatcggt tctgctgtgt ctggcagact gtgcggagtt
      541 attctgacgg gagaatgcta tgaacagact gacaaacctg acacctgcag agaaaaaatt
      601 tcttgatgat gctattgccg cagctgagag agcgtcaggc aaaaagctaa atcagccgaa
      661 ccggcatatc gtcctgaaca aagcgcgtgc gcagattgag ttgcagcgtt acgccgaccg
      721 ccagcgtgca ttacgtgagg atgagcggca gcagtccgag tttgcctggt cacgtccgcg
      781 cgcgccgcgc cgctgattgc gccttttggc ggtttagtgg tgctgacact ccgaaatcgt
      841 ctgccattca cccgcgtgca tagccatgca gtcgcgcaga aatcatcagg tgcgtttttc
      901 agggttatgg ccatggaaag gtgctggaaa tggctaactc gttacagagt ggcgctgagg
      961 gcctttcaga gggtgcgtcc aagagatgtt atggtaaata agagtgtctg ttggatattt
     1021 taaatctgtt tttttattaa atttatgggg gtaggaaatg ggggattttg agcgtaccta
     1081 cggagctggt gctgattttg atcggataat tgatgagaat aacagcgaat attttcgaga
     1141 tgagcgccaa aaagctaaaa attcgaaaaa agaattctct tcttttcaag atgctttggt
     1201 ttgggcgaaa gctaatcctg gtaaaacgat agtaagatct ccagacggtg tgggatttat
     1261 tgaaaaatga aagagtggat tcactgtaaa acggcagtca ttttttggac aacactggct
     1321 atatacgtac tcatatgttt cacagtgtcg tatgttggag tctatgttac gtacattgca
     1381 gggcctattt tgttagttac aggaattctt gcatggctta cgaaacctag tagtaattca
     1441 aataaatcta atatgtgact gggtaagacg aacttcatcc aaccataaaa cccgcttttt
     1501 taaacggatc ttcttgagat catttaggga gaatcgtaat ctcttagctc tgtaaacgaa
     1561 aaaaccaccc ggcaaggtgg ctttttcgaa ggttcgcaag agttgacgct cttttgaacc
     1621 gcggtaactg gcttggagga gcacagtcac caaattagtc ctttcagtgt agccttatcg
     1681 cacccgaaac ttcaagactc tcctcctcta aacctgttac cagtggctgc tgccagtggc
     1741 gctttgtcgt gtctttccgg gttggactca agacgatagt taccggataa ggcgcagcgg
     1801 tcggactgaa cggggggttc gtgcatacag tccagcttgg agcgaactgc ctacccggaa
     1861 ctgagtgtca ggcgtggaat gagacaaacg cggccataac agcggaatga caccggtaaa
     1921 ccgaaaggca ggaacaggag agcgcacgag ggagc
//
