LOCUS       NZ_CP138792             2058 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain T24441 plasmid unnamed9, complete
            sequence.
ACCESSION   NZ_CP138792
VERSION     NZ_CP138792.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040201
            Assembly: GCF_033869415.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:44:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,873
            CDSs (total)                      :: 5,750
            Genes (coding)                    :: 5,564
            CDSs (with protein)               :: 5,564
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 70 of 186
            Pseudo Genes (incomplete)         :: 126 of 186
            Pseudo Genes (internal stop)      :: 34 of 186
            Pseudo Genes (multiple problems)  :: 39 of 186
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138792.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="T24441"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed9"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021"
                     /collected_by="He Fang"
     gene            84..1073
                     /locus_tag="R8540_RS29350"
                     /old_locus_tag="R8540_29345"
     CDS             84..1073
                     /locus_tag="R8540_RS29350"
                     /old_locus_tag="R8540_29345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            1627..1818
                     /locus_tag="R8540_RS29355"
                     /old_locus_tag="R8540_29350"
     CDS             1627..1818
                     /locus_tag="R8540_RS29355"
                     /old_locus_tag="R8540_29350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(800..991)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 attcgaattt ggacacgaca acacaggtga tatggcaatg ataacacgtc aaatgagcca
       61 tcgcccagca tggggcggtg tgcatgcaaa atcctgaact ccagaaccta actgactact
      121 ccccctcaga tgcgccgtgg gacgctcaca gaagcgtttc tgacgacgtg ggagggattt
      181 acctgcttgc ggctgaatat gagcgctacg gggcgcgtat ggcctcctgt ggcggtttac
      241 tgaggtttgg gtggtctacc ctcaaagaaa ccggagaaac gcgcctgagg ctgcgtgagg
      301 cgcatttctg ccgtgtccgg cactgtcctg tctgccagtg gaggcgctcc ctgatgtggc
      361 aagcccgttt ctaccagtcc ctgccgcgta tcgtggcgga ttaccccgat tcccgctgga
      421 tgtttctgac cctgaccgtg cgcaactgcg cgatcgagga gctgggcgag acgctgagcc
      481 ggatgaacac ggctttccag cgactgaagg accgtaaaga gttccgacca gttcagggct
      541 ggatacgcac cacggaagtc acccgcggca gtgacggcag cgcacacccg cacttccaca
      601 ccctgatgat ggttccgccg ggcatgctta acgggaagag ttacgtcagg catgaacgct
      661 gggttgagct gtggcgtgag tgcctgcggg tcagttacga tccgaatgtc gatgtccggg
      721 cagtgaaacc ccgcaagccg aaggacggcg aatcgctggc ctgcgcgacc gccgaactgg
      781 tgcgcggcgc agtggccgaa accctgaaat attccacgaa gccggccgac atggtggccg
      841 atcctaaatg gttcctcgaa ctgacccgcc agacgcacaa gcgccgcttt gtggcgaccg
      901 gcggcgcact caaagacgtg ctgaaactcg atcaggaaac cgacgccgac atggtgatcg
      961 gggatgatat ttccgagggc gatgatgacg gttcccgcat cgcgttcgag tggaagaccg
     1021 aggtcaaaaa gtaccggcgt tcgccgacga aagataaaac cgaatcagac taacagggtg
     1081 tcggggctgc gccctgacca tgagggcttt gggcatccgt caccttggtg gcggtgtacc
     1141 aaagtcacat cttgtccgat tgattttact ccgatgcagg atagggctaa cgccgcaaag
     1201 tgacgtcact cgattactga gttcggattc cgaacctggg tttttcttcc ggtaattttc
     1261 cggaaggcgc gcttagtagt ttctcatctg gcgatgagaa acgcgcggtg gggcaagccc
     1321 acgaaaaaca aaaactgata acggacaaga tgtgtttttg gagtaccgcc atcacgatgc
     1381 cggtaccaaa aacgatccgt cagggctgcg ccccgacacc ctgccaacac ctcacgccgc
     1441 cagattaaaa tctgtcagcg ttcgccgttc ccgaaatcgt caaacgctaa atcgcggggt
     1501 cccgctggct tgccagtggg ttccgattta gtgattgacg acagcacccg taaaatactt
     1561 acagggggtg gttgtgatca cgcagtgagc gcaaccacct gataagcgtt ttttgagggg
     1621 gtaggcatga tcgtcagact ggataaccgg ctgtttgaga ttctcgatga gatgggtgcg
     1681 catgtggatc gggaaatgtt catggcggcc tatgcgcagc ggaaggccga aaaagaaaat
     1741 gatccccggc atatccgtca acggaaactg accaggttgg ctcatgattt gatgtcagaa
     1801 tcggaccctg aattgtgagc ctcgcgtgcg cgcgagggaa atcggtcaga aaatggccgg
     1861 agtctcgtgc gcgcgatcct tgtatttata cttaagggat aactctggcg tcaaaaaacg
     1921 ccgccagccc ttgtgccgca agggtttgag tgtgatttgc ctgaaaatgg ttttggaagt
     1981 attctgtcgg gagtggtcgc agaaaaaagc gacccccgca actgcgctaa cagttcgggg
     2041 gtgtgaccac ctgtagga
//
