LOCUS       NZ_CP138790             4858 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain T24441 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP138790
VERSION     NZ_CP138790.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040201
            Assembly: GCF_033869415.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4858)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4858)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:44:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,873
            CDSs (total)                      :: 5,750
            Genes (coding)                    :: 5,564
            CDSs (with protein)               :: 5,564
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 186
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 186
            Pseudo Genes (frameshifted)       :: 70 of 186
            Pseudo Genes (incomplete)         :: 126 of 186
            Pseudo Genes (internal stop)      :: 34 of 186
            Pseudo Genes (multiple problems)  :: 39 of 186
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138790.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4858
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="T24441"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021"
                     /collected_by="He Fang"
     gene            complement(join(3741..4858,1..601))
                     /locus_tag="R8540_RS29290"
                     /old_locus_tag="R8540_29285"
     CDS             complement(join(3741..4858,1..601))
                     /locus_tag="R8540_RS29290"
                     /old_locus_tag="R8540_29285"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006508 - proteolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="WP_117105082.1"
                     /translation="MHTENTPKETQKNKLATSIQIDTPSNTNQQQPSTRVENIPQQEKQ
                     ITITDGSKDKINIAILIGISDYGSQSTNLPQCENDVSLAKEIITRTKNPRYTLHISNRC
                     SGQDATDKIINFFRDIKEKEEKIDELFFYFTGHGIAHEKNNGEIESRLVFSDYSPSRIN
                     QTTIPSEFIDNQARNLSPNTYVKIIDSCYSGSKIIKGNIEQREKFLNELSKDEKHYTQI
                     GFNSVYVMASSRSDQVSFANSKFSDFSESLFISLSELPGDVKYRHVVNRLADDFTTKEQ
                     RPVFVTQGSLDEGFGVISKDLKDYIYKVLTTEESTEVPSNKGNRSNEEKILKELAESIR
                     QKTSTKLFSKDDFYDFLKLVNKKTLTLLDLLSPFYTVAIDASEKQIVPNEKFIGDWLKS
                     NTHSYFARVRYKKPESTISDSLASNFLNTTLGRSIQNTKPTSKDSASDPQLIIGFTPVG
                     MIDDAHEENSRVREIRLIPKGEMKILDSILIYLIIINSQERIAIFTSIEACPLIDWDKY
                     SSPKCPAWKVHEIKSANQKVETSNELDTIFNNMKSIAIALINSKSLDQEKNIPEA"
                     /name="caspase family protein"
     gene            1463..1654
                     /locus_tag="R8540_RS29295"
                     /old_locus_tag="R8540_29290"
     CDS             1463..1654
                     /locus_tag="R8540_RS29295"
                     /old_locus_tag="R8540_29290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_116484557.1"
                     /translation="MTKQHKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1654..2055
                     /locus_tag="R8540_RS29300"
                     /old_locus_tag="R8540_29295"
     CDS             1654..2055
                     /locus_tag="R8540_RS29300"
                     /old_locus_tag="R8540_29295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_074075293.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHYGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLSSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            2425..2790
                     /locus_tag="R8540_RS29305"
                     /old_locus_tag="R8540_29300"
     CDS             2425..2790
                     /locus_tag="R8540_RS29305"
                     /old_locus_tag="R8540_29300"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_186965635.1"
                     /translation="MNRVVSRPATCHNVIAGRRRTGFLNVLKTGFPAAPATLHGHAINC
                     VPVHRFRMGRTPETGLTLAEWREFSRYALVCILMHAVKTESARFWRVFGWFVACFTGFP
                     SETLPTRFSGARNQALW"
                     /name="hypothetical protein"
     gene            2843..3289
                     /locus_tag="R8540_RS29310"
                     /old_locus_tag="R8540_29305"
     CDS             2843..3289
                     /locus_tag="R8540_RS29310"
                     /old_locus_tag="R8540_29305"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_125450400.1"
                     /translation="MNDKSGFSFMKIGAGAKVTGLRMKRNVMVVDDLSHVESFVTVGER
                     GEVINLDADGNELHTPDSYREKLKIERGELQASLEKAKEEINSIDNDITSQKIKNQLSA
                     ALSQPMDAEGEWNTKRILQGVLDLSKQVGCGVLTAAITHYLGVS"
                     /name="hypothetical protein"
     Typing          complement(931..1342)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="80.576"
                     /coverage="99.0"
                     /evalue="6.73e-81"
ORIGIN
        1 tgccttttat tattttgcta ccgctataac aagagtctat tattttaacg tatgtgtttg
       61 gggataagtt cctagcttga ttgtcaataa actctgaagg tattgttgtt tggtttattc
      121 tgcttgggga gtagtcagaa aataccaatc tagactcaat ttcgccattg tttttttcat
      181 gggcaattcc gtgcccagta aagtagaaga ataactcatc aattttttct tctttctctt
      241 taatgtctcg aaagaaatta attattttgt ctgttgcatc ctgtccagag cagcgattgg
      301 aaatgtgaag agtatatcta gggttttttg ttctagttat tatctcttta gctagagaaa
      361 cgtcattttc acactgaggt agatttgtgg attgagagcc ataatccgaa atcccaatta
      421 atattgctat atttattttg tctttacttc cgtcagttat tgttatttgt ttttcttgct
      481 ggggaatgtt ttctaccctt gttgagggtt gttgttgatt tgtattagat ggtgtatcaa
      541 tttgtatgct ggttgccagt ttgttttttt gtgtttcttt cggagtgttt tcagtgtgca
      601 taatctatcc ctttatcctt agcggaagag ctattgcgtc aaggttgctt ttgttttttt
      661 acacttatat cactgtttaa cacaagtaaa acttaatcct aaactcttga gtttcatgca
      721 ttatcgtcgt agtctgtgct cgtaaacaaa aaaaccgcct tggcgggcgg ttttttgaag
      781 gttctcgaga gttggcgctc ttttgaaccg tggtaactgg ctttagcgga gctcagtcac
      841 ctaatctgtc ctttcagtgt agccgtactc gggctttcac ttcaagaact cttgtaaagt
      901 ccgttggaca aacttgctcc gcaaaccttt taccaatggc taccgccagt ggcgctttgt
      961 cgtgtctgtc agggttggaa tcaagagaac agttacctga ataggcgtgg tagtcggact
     1021 aaacggggag ttcgtgcata tagtccagct tggagcgaac cacctaagca gcacccagtg
     1081 tcaggcgtgg tatgagaaaa cgcggccata acagcggaaa gacacgggct aagctgtaag
     1141 gtgggaacag gagagcgcac gagggagcca ccggagggaa acgtccggta tctttaagtc
     1201 ctgtcgggtt tcgccccttc tgatttgagc gccggaaatc atcagatttc tgcgatgttc
     1261 atcaggaggg cggagcctat ggaaaaacgg ccgcttcgcg gcctttcctt cttccccatt
     1321 tgaccgctcg gtcttctcga gcttttatac gcatgctcct gccgctcgcc gcagccgaac
     1381 gaccggagcg tagcgactga gtgagcgagg aagcggaaaa gagactggtt ttacactgag
     1441 cactgacgct ctgaggccat ttatgacgaa acaacataaa acagcgctga acatggctaa
     1501 attcatccag aatcagtctc tgctcctgct ggagaagctt aacgagcttg atctcgatgt
     1561 cgaggccgac ctttgtgaga aactccacga tgatgcggag catcttttcc gtacactgtc
     1621 ctcgagactg gatgcattac aggatggtaa ctgatggcca gagtgtctat tagtgaggct
     1681 gcccgactga cgggtaagag tagaacaaca ctgcacaggt taattaaagc aggtgacctg
     1741 tccacctgta gcggtgaacg caatgcaaaa atggtagata cttcagagct tttacgtgtc
     1801 tttggtccct ttgagcaacc gaagggtgaa caccattatg gacaggtctc tggacagcgt
     1861 gatacagcct ctgctgacca gagtgaacag gtgattcgtc atctgaaaca ggagattgaa
     1921 cacctgaaca ccttactttc gtccaaggat tcgcacattg acagcctgaa acaggccatg
     1981 ctccttcttg aaaatcacca ggcaaaatta actgaatccc ctgcgccatg gtggaaattc
     2041 tggaaaaaat cctgaccccg tcatgcttca gttttcctct ccggccatcc cggggagttc
     2101 ctgaaccttc ccaaaaatcg ccagatctct gaacgctcct caccactaaa aatacccaca
     2161 ccccacgcaa aattaacatt ttgcggattt gtatttaata tcagtagttt aagttggtga
     2221 aatttcgttt tttaaatttg atttatatag atccgactct atgacgactc gtcatagagt
     2281 ccccggcgag tcgtcataga gtcggtaacg actcaggact ataaaaacaa tgagttaata
     2341 acgacccgac tctagacacg actcccagtt tggttgtttt ttagacgtgg cgactctggg
     2401 tacgactcta gtgaagagtc gccggtgaat cgtgtggtga gtcgtccggc gacttgccat
     2461 aacgtgattg ccggccgtcg acgaaccgga ttcctgaacg tgctgaaaac cggttttccg
     2521 gctgcgccgg caacgcttca cggtcacgca ataaattgcg tccccgttca ccgttttcgg
     2581 atgggaagaa cgccggaaac aggacttacc ctggcggaat ggcgtgaatt ttcgcgctat
     2641 gcacttgtgt gcatactcat gcatgccgta aaaacagagt ctgcgcgttt ctggcgggtt
     2701 ttcgggtggt ttgttgcctg ttttaccggt ttcccgtcag aaacgctgcc aacccgtttc
     2761 agtggtgcgc gtaatcaggc gttatggtaa ataattgctc gtgaaaacgt tattaacatt
     2821 tttatcttat gaggtgatgt gagtgaacga taaatcaggc tttagtttta tgaagatcgg
     2881 tgcaggtgca aaagtgactg gtttaagaat gaaaaggaat gtgatggttg ttgatgatct
     2941 gtctcacgta gagagctttg ttactgttgg tgagcgaggc gaagttatta atctcgatgc
     3001 ggatgggaac gaactacaca caccagacag ttatcgtgaa aagttaaaaa tagaacgcgg
     3061 tgaactccag gcttccttgg agaaagccaa ggaggaaatc aactcaatag ataacgatat
     3121 aacttcgcaa aagattaaga accagttgag tgctgcacta tctcaaccaa tggatgcaga
     3181 aggtgagtgg aacactaaga gaatcctaca aggggtttta gatttatcta aacaagtggg
     3241 ctgtggtgta ctcacggctg cgatcacgca ttatcttgga gttagttaat aaactaccta
     3301 tgcccccatg gtgggtatac aaaaaccatg gggagcggag cgaccttcgt ctagctcttt
     3361 tcttgtgtgt ctcatcttgc aacggattcg atttgtgtgg ggttagtgtc agacttcttg
     3421 gggtcagttt ggatatagag aattattgta cggtaagcct gtgttttgaa caggcttacc
     3481 tctcgcaatg atgtactccc gcgctatacg ccgtttcccg tgaattttcc ttaatcggat
     3541 aacctaaatg cgatacagaa agagcggtga cttaaaagcg atcgtagctg aggcaaaatc
     3601 aatcccttac gcatcaatat tggttaaata atgcgcttaa cgtacaaaag tttccgatat
     3661 ccaaactgac cccttctagg attaaatatg aaaaaggcca ctgatgtgag ggcctttttt
     3721 acctgacgta actattatta ctatgcctct ggaatgtttt tttcttgatc aagactcttt
     3781 gaatttatca aggctattgc tatggacttc atgttattga aaatagtgtc taattcattt
     3841 gatgtttcga ctttttggtt cgctgacttt atttcatgaa ctttccatgc tgggcatttt
     3901 ggtgatgagt acttgtccca atcaattagt gggcatgcct ctatagatgt aaaaattgcg
     3961 attctttcct gtgaattaat tatgattaag taaattaata ttgaatccaa tattttcatc
     4021 tcacccttag gtattaacct tatttctcgg accctgctgt tttcttcatg agcgtcatca
     4081 atcataccta caggagtgaa tccaattatt agttgagggt ccgaagcact gtcttttgaa
     4141 gttggttttg tattctgaat gcttcttcct agtgttgtat tcaggaaatt tgatgctaag
     4201 ctatcactta tggtgctttc tggtttctta tatctaaccc tagcaaagta agagtgagtg
     4261 ttgcttttta gccaatcacc tatgaatttt tcatttggaa ctatttgttt ttcacttgca
     4321 tcaattgcta ctgtgtagaa aggcgataga agatcaagga gtgtgagtgt tttcttattg
     4381 actaacttta aaaaatcata aaagtcgtct ttactaaaca actttgtaga tgttttttgt
     4441 cttatgcttt ctgctagttc ttttagtatt ttttcttcat tgcttctgtt acccttgttg
     4501 cttggtacct cagtggattc ttcagttgtt aaaaccttgt agatgtaatc ttttaaatct
     4561 ttacttatta caccaaaccc ctcatcgaga gatccttgcg tcacgaacac tggccgctgt
     4621 tcttttgttg taaagtcgtc agccaggcgg tttacaacat ggcgatattt tacatcacct
     4681 ggtaattcac taagtgatat aaataatgac tcggagaagt cactaaattt actattggcg
     4741 aatgagactt gatcgctcct tgatgaggcc ataacatata cgctgttaaa accaatttgc
     4801 gtataatgtt tttcatcctt agatagctcg tttaagaact tttctcgttg ctcaatat
//
