LOCUS       NZ_CP138755             2913 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 071533A plasmid unnamed9, complete
            sequence.
ACCESSION   NZ_CP138755
VERSION     NZ_CP138755.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040193
            Assembly: GCF_033870135.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2913)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2913)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:40:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,640
            CDSs (total)                      :: 5,518
            Genes (coding)                    :: 5,392
            CDSs (with protein)               :: 5,392
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 43 of 126
            Pseudo Genes (incomplete)         :: 81 of 126
            Pseudo Genes (internal stop)      :: 17 of 126
            Pseudo Genes (multiple problems)  :: 14 of 126
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138755.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="071533A"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed9"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-07"
                     /collected_by="He Fang"
     gene            complement(495..1430)
                     /gene="kop"
                     /locus_tag="R8552_RS28195"
                     /old_locus_tag="R8552_28190"
     CDS             complement(495..1430)
                     /gene="kop"
                     /locus_tag="R8552_RS28195"
                     /old_locus_tag="R8552_28190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004026564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease Kop"
                     /protein_id="WP_004026564.1"
                     /translation="MNKSTIALMMAMLSGTAYADSTQLTPNFSPESVTVSTSAGMLSGK
                     SHEMVYDTGTGRKVSQLDWKIKNVAILKGDISWDAYSFLTLNARGWTSLASGAGHMDDY
                     DWMNDNQSGWTDHSSHPSTNVNYANEFDLNAKGWVFQNENYKAGVMAGYQETRFSWTAT
                     GGSYNYDNGAYTGEFPAGERGIGYSQRFSMPYIGLVGQYRINDFEFNALFKFSDWVRAH
                     DNDEHYMRDLTFREKTTSSRYYGTSIDAGYYVTPNAKVFAEFTYSKYEEAKGGTQIIDT
                     NSGESASIGGDAAGISNKNYTITAGLQYRF"
                     /name="kop"
     gene            complement(1672..2879)
                     /locus_tag="R8552_RS28200"
                     /old_locus_tag="R8552_28195"
     CDS             complement(join(1672..2558,2558..2879))
                     /locus_tag="R8552_RS28200"
                     /old_locus_tag="R8552_28195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /ribosomal_slippage=""
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="WP_094320042.1"
                     /translation="MTGILLGQEVRKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPS
                     LLFKWKKQYQEGSLTAVAAGEEVVPASELTAALKQVRELQRLLGKKTMEVEILKEAVEY
                     GQSPKMDSARALVAKGRGIAMVSRTMGVSRAQLSLRINRSADWQDRRCNRRNDEADAEI
                     LSAILDIISDMPSYGYRRVWGILRKQRRTEGQPPVNAKRLYRIMSEHNLLLLHHKPERP
                     KREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREAIDWAASTGGYDSST
                     VQDVMLRSVEKRFGDRLPDTAVQWLTDNGSAYTAYETRRFAKELNLEPCTTAVSSPQSN
                     GMAERFVKTMKEDYIAFMPKPDVRTALRNLAAAFTHYNENHPHSALGYHSPREYRRQRA
                     SLT"
                     /name="IS3 family transposase"
ORIGIN
        1 cttctttcgt ttcagctctc acgaatcttg tcctcagcca aagctaatgt acgcatacat
       61 tagcattaag tatcaggtta aacaaaaatc aggaaaccga tctgatttag tgcatgtggc
      121 tgtctctttt gaattatcgc ttttgcgtta tggtattcag ttaatccgat ttctgaaatc
      181 cgggcgtata catgttatct cttttcccgg tggtctactg tagtagacag aaaatacagg
      241 aacctcgata tttccatatc ttaataaatt ctgttcttat atcctccgaa atcttgatgg
      301 atgatatggt gcagcatcat actatggttc tgttttttat gtggatttca tcttctacgc
      361 ttgacgggta tgcctgactt ttaatttatg aaatctttca atgccagagc tgttactctg
      421 gcattaaata tggcatgtgt catgattagg taacgaatga aatggaacaa atcctcctaa
      481 tcaagatttt ttacttagaa tcgatattgc aggcccgctg taatcgtata gtttttattt
      541 gatatcccgg cggcatctcc cccaatggag gcggactcgc cactgttagt atcaataatc
      601 tgagtccctc ccttagcctc ctcatattta ctgtaggtga actcagcaaa tactttggcg
      661 ttcggagtta cgtaatatcc ggcatcaatt gaagtgccat agtaacgtga actggtcgtc
      721 ttctcacgga aagttaaatc ccgcatgtag tgctcatcgt tatcgtgcgc ccgaacccag
      781 tcactgaatt taaacaatgc attgaactca aaatcattaa tacgatactg acctacaagg
      841 ccaatgtacg gcatggaaaa ccgctggcta tagccaattc cacgttcacc agcagggaat
      901 tctccagtat atgcaccatt atcgtagtta taggaaccac cggttgcagt ccagctgaat
      961 cgagtctcct gataaccagc cattacaccc gctttatagt tttcattctg gaaaacccag
     1021 ccttttgcgt tcagatcgaa ttcattggca tagttgacgt tcgtgctggg gtgggatgag
     1081 tggtcagtcc atcccgattg attatcgttc atccagtcat agtcgtccat atgaccagcc
     1141 ccggaagcca gggatgtcca gcctcgtgca ttcagtgtca gaaacgaata tgcatcccag
     1201 gaaatgtcgc cttttaaaat ggctacattc ttgatcttcc agtccagctg gctgaccttt
     1261 cttcctgtac cagtatcata aaccatttca tgagatttac cgcttaacat cccggcggag
     1321 gtagatacag ttacactttc cggtgagaaa tttggcgtta actgcgtaga gtcagcataa
     1381 gcagtacctg aaagcatggc catcatcaat gcaattgtac ttttgttcat tttttattcc
     1441 cataatgaaa catttttccg tgtgttgcag agatagttta aaactcatac aaatatgtag
     1501 caactgtcaa tttttgtaat tttaggtttc tggaaacata tccagcttct ctattgaggt
     1561 tgattaatag gtatataatt cagtttctta tagttaaaat agtcagagta atcttctgat
     1621 ggttcttgga ctgctgatct tgacccgcca tttccggaca gcttttgtat cttaagttaa
     1681 cgatgcccgc tgccgccggt attctctcgg agagtgatat cccagcgcac tatgcgggtg
     1741 attttcattg taatgcgtga acgccgctgc aaggtttcgc agggctgttc tcacatccgg
     1801 tttcggcatg aacgcgatat agtcttcctt catcgtcttc acgaaccgtt cggccatgcc
     1861 attgctctgc gggctgctca ccgctgttgt acatggctcc agattcagct ctttggcgaa
     1921 cctccgcgtt tcatacgcgg tatacgctga accgttatcc gtcagccact gcaccgctgt
     1981 gtcgggcaac ctgtcgccga agcgcttttc caccgacctc agcatcacat cctgcacggt
     2041 cgaactgtca tagcctcccg tgcttgctgc ccagtctatg gcctcacggt cgcagcagtc
     2101 cagcgcgaac gttacccgca gtttttcgcc gttgtcgcag ccgaactcga agccatctga
     2161 acaccagcgc atatcgcttt ctgccaccgc tatcttgccc ttatgttcac gcttcggtcg
     2221 ctctggtttg tgatgcaaca acaacaggtt atgctcgctc attatcctgt aaagccgttt
     2281 ggcattcaca ggtggctgtc cctctgtgcg acgttgcttg cgcaggatgc cccacacgcg
     2341 tcgataacca taactcggca tatcgctgat gatgtcgagg atagccgaca gtatttctgc
     2401 gtctgcttcg tcattacgcc ggttacagcg cctgtcctgc cagtcggcag aacggttaat
     2461 ccgcagtgac agttgcgcac gcgacacgcc catggtccgg ctgaccatgg ctattccccg
     2521 tcctttggca acaagggcgc gtgcgctatc cattttcgcg actgaccgta ctccacggct
     2581 tctttcagga tctcaacttc catcgtcttc ttgcccagaa ggcgctgaag ctcccggacc
     2641 tgcttcagag cagcagtaag ctcagaagca ggaacgactt cctctccagc cgcaacggcg
     2701 gtgaggctgc cttcctgata ttgcttcttc cacttaaaca gcaggctggg ctggatacca
     2761 tgcaggcggg cgacatggga gacattcata cccggctcca tcgtctgctg gataatggcg
     2821 atcttctcct gaggagtttt acgtttacgg acttcttgcc ctaacaggat cccggtcatc
     2881 tcaaaattgg tgttagtgtt agacatatat tca
//
