LOCUS       NZ_CP138753             3478 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 071533A plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP138753
VERSION     NZ_CP138753.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040193
            Assembly: GCF_033870135.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:40:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,640
            CDSs (total)                      :: 5,518
            Genes (coding)                    :: 5,392
            CDSs (with protein)               :: 5,392
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 43 of 126
            Pseudo Genes (incomplete)         :: 81 of 126
            Pseudo Genes (internal stop)      :: 17 of 126
            Pseudo Genes (multiple problems)  :: 14 of 126
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138753.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="071533A"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-07"
                     /collected_by="He Fang"
     gene            complement(759..1184)
                     /locus_tag="R8552_RS28150"
                     /old_locus_tag="R8552_28145"
     CDS             complement(759..1184)
                     /locus_tag="R8552_RS28150"
                     /old_locus_tag="R8552_28145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_015328245.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     gene            2162..2353
                     /locus_tag="R8552_RS28155"
                     /old_locus_tag="R8552_28150"
     CDS             2162..2353
                     /locus_tag="R8552_RS28155"
                     /old_locus_tag="R8552_28150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2824..3015
                     /locus_tag="R8552_RS28160"
                     /old_locus_tag="R8552_28155"
     CDS             2824..3015
                     /locus_tag="R8552_RS28160"
                     /old_locus_tag="R8552_28155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3015..3437
                     /locus_tag="R8552_RS28165"
                     /old_locus_tag="R8552_28160"
     CDS             3015..3437
                     /locus_tag="R8552_RS28165"
                     /old_locus_tag="R8552_28160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_061500298.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(1664..2287)
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.424"
                     /coverage="99.0"
                     /evalue="7.140000000000001e-167"
ORIGIN
        1 gttcctgaac cttcccaaaa atcgccagat ccgggaacac tcctcaccac gaaaaatacc
       61 cacacaccac gcaaaattaa aattttgcag ataactcctt attatcagtt ggttaggttt
      121 tattaaatta cgcagtatta ccttctgtaa ggtcaatcca agtcgtcggt gattcgtgta
      181 cgacttgccg acgactcgtc atagagtcat cgacgactca ctccacacta tcagtaactt
      241 atgacgactt gactctagag tcgaatcgtc gctttggcgt ttttatgacc gtggtgactc
      301 tagagtcaag tcacgagtcg aatcgccggt gaatcgtgtg gtgagtcgtc cggcgacttg
      361 ccataacgtg attgccggcc gtcgacgaac ccgattcctg aacgtgctga cagcgggttt
      421 tccggctgcg ccggcaacgc ttcacggcca cgcaataaat tgcgtccccg ttcaccgttt
      481 tcgggtaaga agaacatcgg aaacaggact taccccggct gaatggcgtg aattttcgcg
      541 ctatgcactt gcgtgcatac tcatgcatgc cgtaaaaaca gagtctgcgc gtttctggcg
      601 ggttttcggg tggtttgttg cctgttttgc cggtttcccg tcagaaacgc cctgagggcc
      661 tctcaggcgg tgcgggcaac ggatgttatg gtaaatccag ctgattggca ggtacaaaaa
      721 aagccccgta gggctttttt tgtaatgcta cgaggaagct actgctgctt agaattcatt
      781 tcctcgatat gattgttcac aatcgatctg aattgcattg gcgccttgat gtttggaatt
      841 ggcgtgttgg ttccgccagt gcctttaatc acgatagagc catagttaaa gattcgtccc
      901 agtatccctt gatgtatgcc aaggctttca actttatcaa tacggagttc caccgtattg
      961 cgtcggatca aacccacttt tgcgatgact ctttggttag ttaatgcaag ctccgttgac
     1021 caaactctaa ggagcactgg gattattata agtaacccta agccgtaaaa aggcagcaac
     1081 aagattccga taattactgg gatgattgtt ggaatccagg aggtttgagc gcgagatatt
     1141 acggattcat ttctcgtcaa tgattggtct acgtagcttc ccataaggtt atatccattt
     1201 agaaaaaata ggatttttcc ctttttaagg cgaatcagca atagaaactt tatgtctccg
     1261 tggtaggtat acaaaattta cggagagcgt agcgaccgtc gcacagttcg gttctttcct
     1321 ttcgtgccgc aactggcttg attctgtggt ggtggtggcg gctgctatgt ctcatatact
     1381 cctggcgttg caatccttta tcccatatct gtcgaatatc acagatgaac ttcttgagat
     1441 cctgtccgtt gcgtcgtaat ctcttgctct gaaaacgaaa aaaccgcctt gcagggcggt
     1501 ttttcgaagg ttctcagagc tagcaactct ttgaaccgag gtaactggct tggaggagcg
     1561 cagtcaccaa aacttgtcct ttcagtttag ccttaaccgg cgcataactt caagactaac
     1621 tcctctaaat cagttaccag tggctgctgc cagtggcgct ttgtcgtgtc tttccgggtt
     1681 ggactcaaga tgatagttac cggacaaggc gcagcggtcg gactgaacgg ggggttcgtg
     1741 catacagtcc agcttggagc gaactgcctt cccggaactg agtgtcaggc gtggaatgag
     1801 ataaacgcgg ccataacagc ggaatgacac cggtaaaccg aaaggcagga acaggagagc
     1861 gcacgaggga gctaccaggg ggaaacgcct gggatcttta tagtcctgtc gggtttcgcc
     1921 gccactgatt tgagcgtcag atttcgtgat gcttgtcagg ggggcggagc ctatggaaaa
     1981 acgccccgcc ggggcgtggc cttttcgccc ttgtccttag ctttcgttat gcttaccgtt
     2041 atgttatctg cttatcttct ctccgctcgc cgcagactca tgaccgaacg gagtgagcga
     2101 atgagcgagg aagcggaaaa ccatcagaac gtacagtaag cactttcgcg ccggggcctt
     2161 catgaacaaa caacaaaaga ctgccgttaa catggctaaa ttcatccagg atcagtccct
     2221 gcttcttctg gacaggctta atgagctgga tctggatcat gaggctgatt tctgcgagaa
     2281 actccatgag gatgcggaac gcctttaccg aagcctgtca gcgcgcctga atgagcagca
     2341 ggacggtgcg taatgtctcc gttctgggta ttaccggagt aataccggca tcgccttaat
     2401 tttcattgtc ttagcgctta acattattac cctggtaata cccacaatcc ctgtattttt
     2461 tcttttttat ttatttttca tgaagttgcg atgaaaatcg cagctgcgtt aggtgtatga
     2521 ccattttgag gttgaaaaat aatcaaccat ggcgggtgat ttacgcaggt taaggggcgt
     2581 cggtgacaaa aaaacgtcat taacgacctc gttcatgctc gcatgaacgg attatttttc
     2641 cggactacag gtaaactaca gaaagactac aaaagctgat gacttaatcc tgatttttag
     2701 tgcgatgact acagataaac tacaaaataa ctacaggatt acctcagatc cgttctctga
     2761 accattcgta catccgaccc ccttaccggt tttacactga gcactgatgc tctgaggtcc
     2821 cttatgacga aacaacagaa aacagcgctg aacatggcta aattcatcca gaatcagtct
     2881 ctgctcctgc tggagaagct taacgagctt gatctcgatg ctgaggccga cctttgtgag
     2941 aaactccacg atgatgcgga gcatcttttc cgtacactgt cctcgagact ggatgaatta
     3001 caggatggta actgatggcc agagtgtcta ttagtgaagc agcacggctt gttaaggtta
     3061 gtcgccctac tatttacaag atgattaaca gtggtaagtt aagttacacc tctgttgtaa
     3121 agcacgggaa gggtattaaa gttattgata catcagagct tattagagtg tttggttctc
     3181 ttgatggtgt catcgatact gtaaaatatg atgtaaaaag tgacgcagaa tctacaggta
     3241 ttaacagcgt tggtttacat gatttacaac atagaatcgc tttacttgaa gctgaaaacg
     3301 atggtcttaa aggggctgtt aaggctcgag atgagcatat tgattccctt cgtcaggcta
     3361 tgcagcttct ggagcacaag cacgaacctt cttcaccacc ccattccccg tggtggaaat
     3421 tctggaaaaa atcctgatcc cgccatgctt gagttttcct ctccggccat cccggggc
//
