LOCUS       NZ_CP138751             5561 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 071533A plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP138751
VERSION     NZ_CP138751.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040193
            Assembly: GCF_033870135.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5561)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5561)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:40:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,640
            CDSs (total)                      :: 5,518
            Genes (coding)                    :: 5,392
            CDSs (with protein)               :: 5,392
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 43 of 126
            Pseudo Genes (incomplete)         :: 81 of 126
            Pseudo Genes (internal stop)      :: 17 of 126
            Pseudo Genes (multiple problems)  :: 14 of 126
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138751.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5561
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="071533A"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-07"
                     /collected_by="He Fang"
     gene            join(5382..5561,1..>9)
                     /locus_tag="R8552_RS28105"
                     /old_locus_tag="R8552_28100"
                     /pseudo=""
     CDS             join(5382..5561,1..>9)
                     /locus_tag="R8552_RS28105"
                     /old_locus_tag="R8552_28100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229630.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /name="PIN domain-containing protein"
     gene            116..2323
                     /locus_tag="R8552_RS28110"
                     /old_locus_tag="R8552_28105"
     CDS             116..2323
                     /locus_tag="R8552_RS28110"
                     /old_locus_tag="R8552_28105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017901323.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="WP_065800288.1"
                     /translation="MALEQVIYNLEEVKGLSDEELYQRLYDSWGLENHKIDVWGELSIN
                     EAGNWAGIRNAKTLSGNQSIEYPLADSHELQSGVFLTPSVAKIVLGNDTKGMVACELML
                     ASIPQRAKKNNPFLLAVNDKTVERLTYLPDALPNLDRQALIQNEDETLLRKVIYDAEVK
                     RVKHKIASETEALEAALQEKQQDMTDKLAELSDAFKSTQDKITASTTELESSIKRNEEL
                     NNDNHRLNLKIQESKAELDVIIEKSRKVEENMARKVEKLTDFIKEKAIFLKSFEFLDEE
                     DFDFFVGSPLSNKERGEHISFSQALYSNYSDAVSYIQAYLKERDILYPRHIIENFLTLI
                     RTNDLIILAGDSGSGKTNLVQSFAKAIGGVSKIIPVKPNWTSSEDLLGYYNPLEKKYLA
                     TPFLEALIEAKQNPDIPYFICLDEMNLARVEYYFADFLSKLEERNEQPTIQLYSDDEAA
                     HVLAELKGVVSVISNAQEKFSKNGIVDFVALMQDEEINAEMKRAFGFSDKDSLIKYHGD
                     IRRMLAGVLGTPSSITIPANVRIIGAINIDETTHYLSPKILDRAHVMKFKSPLLTDWDA
                     IFDEIDSYGLDDVTLPLVFDIEELGERTPYPKFERLNEFCELFTTLNRDVFDPLGVEFG
                     MRTIRQGLNYVSLFSDVNDNKSLAIHNFIVHKVLPKFTFDGDKQVGDYSKAELVSRVFL
                     PRLESLLDNQVEIAAEFSCTKSIERLVKTAESNDGVVNYWA"
                     /name="AAA family ATPase"
     gene            2326..4902
                     /locus_tag="R8552_RS28115"
                     /old_locus_tag="R8552_28110"
     CDS             2326..4902
                     /locus_tag="R8552_RS28115"
                     /old_locus_tag="R8552_28110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004182109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclease domain-containing protein"
                     /protein_id="WP_017901322.1"
                     /translation="MEAPFVIKFIETKWHDKQTLVSVSESEYSLKLEQTGNNAFSAHTT
                     IYPKVDELRFAQLAIKTKQGDQSPPYIAMPNGERRQLESITDPASNEEWWVEPAHWDAK
                     QRVWRSEARRTAGQIMFVIGSSTLKLDIDISEQTKSDLSRYLSDFKADLWELILDESSH
                     ITGDAKNSQVAAIDQEALSLVASILSNAQTILKKPKVELKEIQALKPAKEVRPVPRTFM
                     EICTKGSRKHLTSRASEPSYNVPENQYVLYVVSSTLSIVKQLVKVAESKKSRFSGAIEK
                     LNERLDSLKDYRIINRDLVVKDLERLKKRFDTEVINAELSEQLAKINVNLSRSYSEKGY
                     LRLEKATGSENEWWAKIKPSQNDDWQQFEPDGYTIFSSRDHYASLFKSYSDYEIEAKIP
                     LPLRRGKAVVLYPEYISRICVLPESRSIQREQENFTKLRDKGIALSKKDWQAKLTTDEL
                     AEQEKERATINKRLGYFATEHEKVGIVHKALEPKLKPFQQIEKEWRQCKVKSKSTFPNS
                     MTFVQNPAYQAVHSGFKKLKEQIGLADEDILLSLEKIEAIGLVNMPLLYERWCLLQIIK
                     VLTQAFRYQPEDNWKRKLIANIQGNEEQISIQFFNPSVSRAITLQYEPFLANGKRPDFV
                     LDVEAITKSGNQISKRLVVDAKYYSAAYLKQRGGIGGVIHELYNGKDYSECQENSVFVL
                     HPVLDAVEKVVSPQEWAKDSYLGELSMFDWEPAHHQRQATNYGAVCANPMKSQRYLDEI
                     QRMLGMFLQYGIEDNTSFRGASDDTHAVNFCVSCGSEKVVDVTKSMSSNNQKRWYRCNE
                     CTHFTVYTHCGTCNTRLIKNGEYWTYLSLMPMSSINIKCPNCESPV"
                     /name="nuclease domain-containing protein"
     gene            5155..5385
                     /gene="vapB"
                     /locus_tag="R8552_RS28120"
                     /old_locus_tag="R8552_28115"
     CDS             5155..5385
                     /gene="vapB"
                     /locus_tag="R8552_RS28120"
                     /old_locus_tag="R8552_28115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004213073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapB family
                     antitoxin"
                     /protein_id="WP_001261275.1"
                     /translation="MRTVSIFKNGNNRAIRLPRDLDFDGVSELEIVREGDSIILRPVRP
                     TWGSFAQLDRADPDFMAEREDVVSDEGRFDP"
                     /name="vapB"
ORIGIN
        1 agagacttac ccgaaatctg atttattcaa caaagcccct gtttttctcg agatgtagat
       61 gtgttgagtt tgcaacacgt aggtaatccc tttatttatt gtttgaatag aaatcatggc
      121 tttagaacaa gttatctaca accttgaaga ggttaaaggg ctctctgatg aagagcttta
      181 ccaacgcctt tatgatagtt ggggcttgga aaatcataaa attgatgtct ggggtgaact
      241 gagtattaac gaggcaggga actgggctgg tatccgtaac gcaaaaactc ttagtggcaa
      301 ccaaagcata gaataccctc tggctgattc gcatgaattg caatcaggtg tgtttttaac
      361 cccatcagta gcaaaaatag tgttaggcaa tgacactaaa gggatggttg cttgtgaact
      421 gatgttagca tccatcccgc aaagagctaa aaaaaacaac ccatttctat tagccgtcaa
      481 tgataagacg gttgagcgtt tgacctatct gcccgatgca ttacctaatt tagatcggca
      541 agccctaatt caaaatgaag atgaaacact gctacgcaaa gttatttatg acgcagaagt
      601 aaagcgcgtt aaacataaaa tcgcctcaga aacagaagcg ttagaggcag cgttgcaaga
      661 aaaacaacag gatatgactg acaagttggc ggagttgtca gacgcattca aaagtacaca
      721 ggataaaatc acagcatcaa cgacagagct tgaaagctca atcaagagaa atgaagaact
      781 aaataatgat aatcatcggc taaatctgaa gattcaggaa agcaaagctg agttagacgt
      841 cattatcgaa aagagccgaa aagtagagga aaatatggca agaaaagtcg agaaactaac
      901 agatttcatc aaagagaaag ccatcttcct gaagagtttt gagtttttgg atgaggaaga
      961 tttcgacttt tttgttggaa gccccttgtc taataaggag cgtggtgaac atatctcttt
     1021 ttcacaagcc ctttattcaa actacagcga tgcagtttct tacattcaag cgtacctcaa
     1081 agaacgagac atcctgtacc ctcgccatat tatcgagaac ttcctaacgc ttattcgcac
     1141 caatgatctc atcattctgg cgggggactc aggctcaggc aaaacaaacc tggttcagtc
     1201 gtttgccaag gctattggtg gggtatctaa gatcattccg gttaagccta actggactag
     1261 ttcagaagat ttgctgggct attacaatcc cctagagaag aaatatttgg cgacaccatt
     1321 tcttgaggca ttgatcgagg ctaagcaaaa cccagatatc ccatacttca tctgtttaga
     1381 cgaaatgaac cttgcccgag tggaatatta ctttgccgac tttctttcta agctagagga
     1441 gcgtaacgag caaccgacca ttcaacttta ctcggatgat gaagctgcac acgttcttgc
     1501 cgagctaaaa ggggttgttt ctgtcatttc taacgcgcaa gaaaagttca gcaaaaatgg
     1561 catcgtggac ttcgttgcgc tcatgcaaga tgaagaaatt aacgctgaaa tgaagcgcgc
     1621 gtttggcttt agcgataaag actcactgat taaataccac ggtgatatca gacgtatgtt
     1681 ggcaggtgtt ctcggcacgc cttcgtcaat cacgattcca gcgaacgtaa gaattattgg
     1741 tgctatcaac atcgacgaaa caacccatta cctctcacca aaaatacttg atcgtgcaca
     1801 cgtgatgaag ttcaagagtc ctttgctgac cgactgggat gctatttttg atgagattga
     1861 ctcttacggg ctcgacgacg ttactttacc gctagtgttt gatattgaag agcttggtga
     1921 gcgtacccct tatccgaaat ttgaacgttt gaatgaattc tgcgagttat ttacgacttt
     1981 aaaccgcgat gttttcgacc cgcttggcgt ggaatttggt atgcgaacta ttcgacaagg
     2041 gcttaactat gtaagtttat ttagcgatgt aaacgataat aagtctctgg ccatccacaa
     2101 ctttatcgtt cataaggtgc taccaaaatt cacatttgat ggcgataagc aagtgggtga
     2161 ttacagtaaa gctgagcttg ttagccgtgt attcttacct cgccttgagt cgctgctgga
     2221 caaccaagta gaaatagcgg cggagttttc atgcaccaaa tcgatagagc gtttagttaa
     2281 aacggctgaa tcgaatgatg gcgttgtgaa ctactgggcg taatcatgga agctccattc
     2341 gttatcaagt ttatcgagac caaatggcac gataagcaaa ccttagtcag tgttagcgag
     2401 tcggagtact cgctaaagct tgagcagacg ggaaacaacg ccttttccgc gcacaccacc
     2461 atttacccaa aggtcgatga actgcgtttt gctcaacttg cgataaaaac taagcagggt
     2521 gatcagtcac cgccctacat tgccatgccc aatggtgaga gaaggcagtt agagtcgatt
     2581 accgatcccg cttctaatga ggagtggtgg gttgagcctg cccattggga tgcaaaacag
     2641 cgggtttggc gcagtgaagc gcgaaggact gctggccaaa tcatgtttgt cattggcagc
     2701 tcaacactga agcttgatat tgatatttcc gaacagacta aatcggatct ttcacgttac
     2761 ctgtcagatt ttaaagcgga cctgtgggag ttgatcctcg atgagagtag tcatatcacg
     2821 ggcgacgcta aaaattcaca ggttgcagcc atcgaccaag aagcgctgtc attagtcgca
     2881 tcaattctta gcaatgcaca aaccatcctc aaaaagccca aagttgaact gaaagaaatt
     2941 caagcgttaa agccagcaaa agaagtacgt cctgttccac gtacatttat ggagatttgt
     3001 accaaaggtt cgcgtaagca tttaacgagc cgcgcatctg agccgagtta caacgtgcca
     3061 gaaaaccagt atgtgctgta tgtggtttcg agcacgctga gcattgtaaa gcaattggtt
     3121 aaggtggctg agagcaaaaa gagtcgtttt tctggggcta ttgaaaagct caatgagcgt
     3181 ttagacagtt taaaagacta tcgtattatc aaccgtgacc tagtagttaa agacttagaa
     3241 cgacttaaaa agcgctttga tacagaagta atcaatgccg agttatcgga acagttagcg
     3301 aaaatcaacg ttaatctgtc tcgaagttac tctgaaaaag gttacctaag attggaaaaa
     3361 gcaacaggct ctgagaatga gtggtgggct aaaattaaac catcgcaaaa tgatgactgg
     3421 caacagtttg agccagatgg atataccatt tttagttcta gagatcatta cgccagcttg
     3481 tttaaatctt atagcgacta tgagatagaa gcgaagatcc ctttaccgtt aagaagggga
     3541 aaagcggtgg tcttgtatcc agaatacatc tcacgaattt gcgtattacc agagtctcgt
     3601 tctattcaaa gagagcaaga aaatttcact aaattgcgtg acaaaggcat tgctctaagt
     3661 aaaaaggatt ggcaagcgaa gctgacaaca gatgaactcg ctgaacagga aaaagaacgt
     3721 gctaccatca ataagcgctt gggttatttc gcaactgaac atgaaaaggt gggaatcgta
     3781 cacaaagcgc ttgagccaaa actgaaacct ttccagcaaa tagaaaaaga atggcgtcaa
     3841 tgcaaagtca aaagtaaaag cacctttcct aactctatga cttttgtgca aaaccctgcc
     3901 tatcaagcgg ttcactcggg ttttaaaaag ttaaaagagc agattggctt ggccgatgag
     3961 gacattttgc tttcgctgga gaagatcgaa gcgattgggt tagtcaacat gccactactt
     4021 tatgaacgct ggtgtttgct gcaaatcatc aaagtgctga ctcaggcatt ccgctatcag
     4081 ccagaggaca actggaaacg aaaattgatt gcgaatattc aaggcaatga agaacaaatc
     4141 agcattcagt ttttcaaccc aagtgtttca agagctatca ctctgcaata cgaaccgttc
     4201 ttagcaaatg gtaagcgccc tgattttgtt ttggatgtag aagcgattac caaaagtggt
     4261 aaccagattt caaagcggtt agtcgtcgat gcaaagtact attctgctgc ctatctcaag
     4321 caaagaggtg ggatcggtgg ggttatccat gaactttaca acggcaaaga ttatagcgaa
     4381 tgccaagaga acagtgtgtt tgttcttcac cccgtgttag atgcggttga gaaagtcgtc
     4441 tctccacagg aatgggcgaa agacagttat ttgggcgaac tatccatgtt tgattgggaa
     4501 cctgcacacc atcaacgcca agctacaaac tatggtgcag tatgtgcaaa cccaatgaag
     4561 tcgcaacgct atcttgatga aatccaacgt atgctaggga tgtttctaca gtacggcatt
     4621 gaagacaata catcttttcg aggagcatcg gatgatactc atgcggtgaa tttttgtgtt
     4681 tcttgcgggt ctgaaaaagt agttgatgta acgaaatcaa tgagttcaaa taatcaaaag
     4741 cgttggtatc ggtgcaatga gtgtacacac tttaccgtgt atacccactg tggtacatgc
     4801 aatacacgat taattaagaa tggcgagtat tggacctatt tgtctttgat gcctatgtct
     4861 tcaattaaca taaagtgtcc aaactgcgag tctcccgtat gacgggtgac ctgctccccg
     4921 tattttcaca cagactgctg ttagttactt ccgcctttgg gagttttcgg atctgcggtg
     4981 gaaaaatgag aaagcaggat atgcacagca tatccatatg ccgcgcatct gcatagggca
     5041 gacatacgca tatgccagtc atctgcatat gtgacaccta tacaaaccag tccggcaggc
     5101 atatactgca catatgcact cacacatcat gcatgatcag ccggaggaac atccatgcgt
     5161 acagtttcga tatttaaaaa cggcaataac cgcgccatcc gtctgccccg ggatctggat
     5221 tttgacggcg tcagcgagct ggagatcgtc cgggaagggg acagcatcat tctgcgtccc
     5281 gtccggccga cctggggctc gttcgcgcag ctggacaggg ccgatccgga ctttatggcg
     5341 gagcgtgagg atgtggtcag cgacgaagga cgctttgatc catgaagaaa acctggatgc
     5401 tcgacactaa catctgctcg ttcatcatgc gcgagcagcc ggcagcggtg ctgaagcgcc
     5461 tggagcaggt ggtgctgcgc ggtgatcgca tcgtggtctc ggccgtgacg tatgccgaga
     5521 tgcgcttcgg cgccaccggc ccgaaggcct cgccgcgcca t
//
