LOCUS       NZ_CP138745             1996 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 0804007 plasmid unnamed8, complete
            sequence.
ACCESSION   NZ_CP138745
VERSION     NZ_CP138745.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040192
            Assembly: GCF_033863175.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:37:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,885
            CDSs (total)                      :: 5,759
            Genes (coding)                    :: 5,563
            CDSs (with protein)               :: 5,563
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 196
            CDSs (without protein)            :: 196
            Pseudo Genes (ambiguous residues) :: 0 of 196
            Pseudo Genes (frameshifted)       :: 70 of 196
            Pseudo Genes (incomplete)         :: 124 of 196
            Pseudo Genes (internal stop)      :: 34 of 196
            Pseudo Genes (multiple problems)  :: 26 of 196
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138745.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="0804007"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed8"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-08"
                     /collected_by="He Fang"
     gene            93..790
                     /locus_tag="R8538_RS29420"
                     /old_locus_tag="R8538_29420"
     CDS             join(93..342,342..790)
                     /locus_tag="R8538_RS29420"
                     /old_locus_tag="R8538_29420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558268.1"
                     /ribosomal_slippage=""
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1-like element IS1X3 family transposase"
                     /protein_id="WP_223229472.1"
                     /translation="MASISISCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTY
                     TASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHFKKLRPQSVTSRIQPGSDVIV
                     CAEMDEQWGYVGAKSRQRWLFYAYGRMCRTVVARVFGERTLATLERLPGLLSAFEVVVW
                     MTDGWPLYESRLKGELHVISKRYTQRIERHNQNLRQHLARLGRKSLSFSKSVALHDKVI
                     GHYLNIKHYQ"
                     /name="IS1-like element IS1X3 family transposase"
     gene            <800..1108
                     /locus_tag="R8538_RS29425"
                     /old_locus_tag="R8538_29425"
                     /pseudo=""
     CDS             <800..1108
                     /locus_tag="R8538_RS29425"
                     /old_locus_tag="R8538_29425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012561120.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
ORIGIN
        1 tatttaacag cgtgacgata atccagatcg cctgccggat aatggtgcca acttactgat
       61 ttagtgtacg atggtgtctt tgaggtgctc cagtggcttc catctccatc agttgtccct
      121 cctgctcagc tactgaaggc gtggtgcgta acggtaaaag tactgccgga catcagcgct
      181 atctctgctc tcactgccgt aaaacatggc agctacagtt cacttacacc gcctctcagc
      241 ccggtacgca ccagaaaatc attgatatgg ccatgaatgg cgttggatgc cgggcaaccg
      301 cccgcattat gggcgttggc ctcaacacga ttttacgtca cttaaaaaac tcagaccgca
      361 gtcggtaacc tcacgcatac aaccgggcag tgacgtcatt gtctgcgcgg aaatggacga
      421 acagtggggc tacgtcgggg ctaaatcacg tcagcgctgg ttattttacg cctatggcag
      481 gatgtgcagg acggtggtgg cacgcgtctt tggtgagcgt actctggcca cgctggagcg
      541 tcttccgggc ctgctgtcgg cctttgaggt cgtggtatgg atgacggatg gctggccgct
      601 ttatgaatcc cgcctgaagg gagaactgca cgttatcagc aagcgatata cgcagcgaat
      661 tgagcggcat aaccagaatc tgaggcagca tctggcaagg ctgggcagga agtcactgtc
      721 gttctcaaaa tcggtggcgc tgcatgacaa agtcatcggg cattatctga acataaaaca
      781 ctatcagtaa gttggagtca ttaccaacca gttcaccacc tactcgctcc gcgattgtgg
      841 cagtcttcga aatccccgga cgatccgcct ttatgaaagt cttgctcaat tcaaatcttc
      901 aggcttatgg gttactactc atgcttggtt aaatgaccgt ttcgtcttac cggaatccca
      961 gcagaagaac ttggcagagt tgaaacgatc tttccttgat cctgcactca agcagataaa
     1021 tgagaaaaca cctttacttg ctaagtatag tattgatgat tcaggaaaat ttctgttctc
     1081 aataattgat aagcaaaatc ccgtctgaca taaatcagca cacatgagcc tgtcatttga
     1141 caaatttttg tcatgaagat gggcggattt ccacacagca ccggcgcccg gtaaggtggg
     1201 cggattccca cacggcaccg gcgcccggca agatgggcgg atttccacac agcaccggcg
     1261 cccggtaagg tgggcggatt tccacacagc accggcgccc ggcaaggtgg gcggattccc
     1321 acacggcacc ggcgcgcggc aaggtgggcg gattcccaca cggcaccggc gcgcggcaag
     1381 gtgggcggat ttccacacgg caccggcgcc cggcaaggtg ggccgattcc catatcgaca
     1441 tgtatgtagc ttgtgttatc tgtggattgt gcagctcagc gggtcgctgg tcgtatggcg
     1501 gagtgtcccc cgtaaccggc cgcgtgcggc cgctaacgcg cagtacggcg ccgcgtcccg
     1561 cagacgggcc gccgttcccg cgcgcagcac tgcgcacccc cgtgggggac gtacggcagc
     1621 tgcgtggcgg tgagcgggat tagggctttg cagctaccgt gttaagttcc ctggtgtcgc
     1681 tgaaatagtt gatgaacatc cccctaagcg tcagcagcaa gctgccgccg cttaggcccc
     1741 ggaaatcacg ccctttacgt cgtaaacgcc gtaaagcccg ctcaccgggg ttaaaaggga
     1801 ttactttgac ttcttcattg ctgttcgcga gttaaggcta atcagggcag ggggtagggt
     1861 ggcagaattt atagcccggc aaccggctac gccgggcttt cggcgccatt ttacaacaca
     1921 gacggctttg ttgaataaat cgaacttttg ctgagttgaa ggatcagatc acgcatcttc
     1981 ccgacaacgc agacca
//
