LOCUS       NZ_CP138744             3478 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 0804007 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP138744
VERSION     NZ_CP138744.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040192
            Assembly: GCF_033863175.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:37:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,885
            CDSs (total)                      :: 5,759
            Genes (coding)                    :: 5,563
            CDSs (with protein)               :: 5,563
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 196
            CDSs (without protein)            :: 196
            Pseudo Genes (ambiguous residues) :: 0 of 196
            Pseudo Genes (frameshifted)       :: 70 of 196
            Pseudo Genes (incomplete)         :: 124 of 196
            Pseudo Genes (internal stop)      :: 34 of 196
            Pseudo Genes (multiple problems)  :: 26 of 196
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138744.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="0804007"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-08"
                     /collected_by="He Fang"
     gene            complement(join(3080..3478,1..27))
                     /locus_tag="R8538_RS29400"
                     /old_locus_tag="R8538_29400"
     CDS             complement(join(3080..3478,1..27))
                     /locus_tag="R8538_RS29400"
                     /old_locus_tag="R8538_29400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_015328245.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     gene            1005..1196
                     /locus_tag="R8538_RS29405"
                     /old_locus_tag="R8538_29405"
     CDS             1005..1196
                     /locus_tag="R8538_RS29405"
                     /old_locus_tag="R8538_29405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1667..1858
                     /locus_tag="R8538_RS29410"
                     /old_locus_tag="R8538_29410"
     CDS             1667..1858
                     /locus_tag="R8538_RS29410"
                     /old_locus_tag="R8538_29410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1858..2280
                     /locus_tag="R8538_RS29415"
                     /old_locus_tag="R8538_29415"
     CDS             1858..2280
                     /locus_tag="R8538_RS29415"
                     /old_locus_tag="R8538_29415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_061500298.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(507..1130)
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.424"
                     /coverage="99.0"
                     /evalue="7.140000000000001e-167"
ORIGIN
        1 caatgattgg tctacgtagc ttcccataag gttatatcca tttagaaaaa ataggatttt
       61 tcccttttta aggcgaatca gcaatagaaa ctttatgtct ccgtggtagg tatacaaaat
      121 ttacggagag cgtagcgacc gtcgcacagt tcggttcttt cctttcgtgc cgcaactggc
      181 ttgattctgt ggtggtggtg gcggctgcta tgtctcatat actcctggcg ttgcaatcct
      241 ttatcccata tctgtcgaat atcacagatg aacttcttga gatcctgtcc gttgcgtcgt
      301 aatctcttgc tctgaaaacg aaaaaaccgc cttgcagggc ggtttttcga aggttctcag
      361 agctagcaac tctttgaacc gaggtaactg gcttggagga gcgcagtcac caaaacttgt
      421 cctttcagtt tagccttaac cggcgcataa cttcaagact aactcctcta aatcagttac
      481 cagtggctgc tgccagtggc gctttgtcgt gtctttccgg gttggactca agatgatagt
      541 taccggacaa ggcgcagcgg tcggactgaa cggggggttc gtgcatacag tccagcttgg
      601 agcgaactgc cttcccggaa ctgagtgtca ggcgtggaat gagataaacg cggccataac
      661 agcggaatga caccggtaaa ccgaaaggca ggaacaggag agcgcacgag ggagctacca
      721 gggggaaacg cctgggatct ttatagtcct gtcgggtttc gccgccactg atttgagcgt
      781 cagatttcgt gatgcttgtc aggggggcgg agcctatgga aaaacgcccc gccggggcgt
      841 ggccttttcg cccttgtcct tagctttcgt tatgcttacc gttatgttat ctgcttatct
      901 tctctccgct cgccgcagac tcatgaccga acggagtgag cgaatgagcg aggaagcgga
      961 aaaccatcag aacgtacagt aagcactttc gcgccggggc cttcatgaac aaacaacaaa
     1021 agactgccgt taacatggct aaattcatcc aggatcagtc cctgcttctt ctggacaggc
     1081 ttaatgagct ggatctggat catgaggctg atttctgcga gaaactccat gaggatgcgg
     1141 aacgccttta ccgaagcctg tcagcgcgcc tgaatgagca gcaggacggt gcgtaatgtc
     1201 tccgttctgg gtattaccgg agtaataccg gcatcgcctt aattttcatt gtcttagcgc
     1261 ttaacattat taccctggta atacccacaa tccctgtatt ttttcttttt tatttatttt
     1321 tcatgaagtt gcgatgaaaa tcgcagctgc gttaggtgta tgaccatttt gaggttgaaa
     1381 aataatcaac catggcgggt gatttacgca ggttaagggg cgtcggtgac aaaaaaacgt
     1441 cattaacgac ctcgttcatg ctcgcatgaa cggattattt ttccggacta caggtaaact
     1501 acagaaagac tacaaaagct gatgacttaa tcctgatttt tagtgcgatg actacagata
     1561 aactacaaaa taactacagg attacctcag atccgttctc tgaaccattc gtacatccga
     1621 cccccttacc ggttttacac tgagcactga tgctctgagg tcccttatga cgaaacaaca
     1681 gaaaacagcg ctgaacatgg ctaaattcat ccagaatcag tctctgctcc tgctggagaa
     1741 gcttaacgag cttgatctcg atgctgaggc cgacctttgt gagaaactcc acgatgatgc
     1801 ggagcatctt ttccgtacac tgtcctcgag actggatgaa ttacaggatg gtaactgatg
     1861 gccagagtgt ctattagtga agcagcacgg cttgttaagg ttagtcgccc tactatttac
     1921 aagatgatta acagtggtaa gttaagttac acctctgttg taaagcacgg gaagggtatt
     1981 aaagttattg atacatcaga gcttattaga gtgtttggtt ctcttgatgg tgtcatcgat
     2041 actgtaaaat atgatgtaaa aagtgacgca gaatctacag gtattaacag cgttggttta
     2101 catgatttac aacatagaat cgctttactt gaagctgaaa acgatggtct taaaggggct
     2161 gttaaggctc gagatgagca tattgattcc cttcgtcagg ctatgcagct tctggagcac
     2221 aagcacgaac cttcttcacc accccattcc ccgtggtgga aattctggaa aaaatcctga
     2281 tcccgccatg cttgagtttt cctctccggc catcccgggg cgttcctgaa ccttcccaaa
     2341 aatcgccaga tccgggaaca ctcctcacca cgaaaaatac ccacacacca cgcaaaatta
     2401 aaattttgca gataactcct tattatcagt tggttaggtt ttattaaatt acgcagtatt
     2461 accttctgta aggtcaatcc aagtcgtcgg tgattcgtgt acgacttgcc gacgactcgt
     2521 catagagtca tcgacgactc actccacact atcagtaact tatgacgact tgactctaga
     2581 gtcgaatcgt cgctttggcg tttttatgac cgtggtgact ctagagtcaa gtcacgagtc
     2641 gaatcgccgg tgaatcgtgt ggtgagtcgt ccggcgactt gccataacgt gattgccggc
     2701 cgtcgacgaa cccgattcct gaacgtgctg acagcgggtt ttccggctgc gccggcaacg
     2761 cttcacggcc acgcaataaa ttgcgtccct gttcaccgtt ttcgggtaag aagaacatcg
     2821 gaaacaggac ttaccccggc tgaatggcgt gaattttcgc gctatgcact tgcgtgcata
     2881 ctcatgcatg ccgtaaaaac agagtctgcg cgtttctggc gggttttcgg gtggtttgtt
     2941 gcctgtttta ccggtttccc gtcagaaacg ccctgaaagc ctctcaggcg gtgctgataa
     3001 cggatgttat ggtaaatcca gctgattggc aggtacaaaa aaagccccgt agggcttttt
     3061 ttgtaatgct acgaggaagc tactgctgct tagaattcat ttcctcgata tgattgttca
     3121 caatcgatct gaattgcatt ggcgccttga tgtttggaat tggcgtgttg gttccgccag
     3181 tgcctttaat cacgatagag ccatagttaa agattcgtcc cagtatccct tgatgtatgc
     3241 caaggctttc aactttatca atacggagtt ccaccgtatt gcgtcggatc aaacccactt
     3301 ttgcgatgac tctttggtta gttaatgcaa gctccgttga ccaaactcta aggagcactg
     3361 ggattattat aagtaaccct aagccgtaaa aaggcagcaa caagattccg ataattactg
     3421 ggatgattgt tggaatccag gaggtttgag cgcgagatat tacggattca tttctcgt
//
