LOCUS       NZ_CP138736             1914 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 0804017 plasmid unnamed10, complete
            sequence.
ACCESSION   NZ_CP138736
VERSION     NZ_CP138736.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040191
            Assembly: GCF_033862455.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:46:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,878
            CDSs (total)                      :: 5,752
            Genes (coding)                    :: 5,559
            CDSs (with protein)               :: 5,559
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 193
            CDSs (without protein)            :: 193
            Pseudo Genes (ambiguous residues) :: 0 of 193
            Pseudo Genes (frameshifted)       :: 70 of 193
            Pseudo Genes (incomplete)         :: 122 of 193
            Pseudo Genes (internal stop)      :: 34 of 193
            Pseudo Genes (multiple problems)  :: 27 of 193
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138736.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="0804017"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed10"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-08"
                     /collected_by="He Fang"
     gene            368..1855
                     /gene="ltrA"
                     /locus_tag="R8556_RS29390"
                     /old_locus_tag="R8556_29395"
     CDS             368..1855
                     /gene="ltrA"
                     /locus_tag="R8556_RS29390"
                     /old_locus_tag="R8556_29395"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226014.1"
                     /GO_function="GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="WP_004178082.1"
                     /translation="MMYGEEKSDSLIVAAKQANNPKGAESVERRSGAKGNAEQPHMRRT
                     QSRESMSQRLSRVREAAKQRKKERFTALFHLLTVEALEAAFLSLSRKAAAGVDGIRWMD
                     YAGNMKNNITDLHRRLHQGSYRAQPGRRHYIPKADGKQRPLGIASLEDKIVQYALVKIL
                     NAVYENDFMGFSYGFRPGRSQHDALDALATGLVRTNVNWVLDADISQFFDRVSHEWLIR
                     FTEHRIGDRRVIRLIRKWLTAGTSEEGQWRATEEGTPQGAVISPLLANIYLHYVFDLWA
                     HQWRRRYATGNVVMVRYADDIVIGFDKRYDARRFRIAMQRRLREFGLTVHPEKTRLMEF
                     GRFAAENRAIRGKGKPETFNFLGFTHISGKDRNGRFMLIRKTRRDRMTATLKAIKDGLR
                     RRWHYSIPEQGKWLRRVVQGYLNYHSVPGNFPTMQKFRTHVTNLWRRALRRRSQKDDTT
                     WTKANKLAAAWLPRVRVLHPWPVERFTARHPRQEPGA"
                     /name="ltrA"
ORIGIN
        1 cagtgtgcgc cgggagaccg gtagagatca aggggtgaaa gtccccgacc attgaaggac
       61 cagcaatcca caaggtcccc gagtcatgcg ttgcataccg cgaggtatgg ggcgaagcgt
      121 tgacaggggt gttgacaggc cagccattga gccacgaaat gtatattaaa ttaccgggtg
      181 ccgacgttgt actgttaacg gaaggcaaca tcatagggtg cgatactgcg agtgccacat
      241 ggacccggcg gggtctgaga ccctggcatg tcaatacgat ctctacgcgg gaaccgggag
      301 atctcccctc tgaccatctg ccagtgtcgg agatggcccg caccgggaag acgaggagtc
      361 atagccggtg atgtacggag aggagaagtc ggactcgctc atagtagcgg cgaagcaggc
      421 gaacaacccg aaaggagcgg agtcagtgga gcgaaggagc ggggccaagg ggaacgcgga
      481 acagccacac atgcgccgga cacagagccg ggaaagcatg tcacagaggc tgtcacgcgt
      541 gcgggaagct gcgaagcagc ggaagaaaga acggtttaca gcattgttcc acctgctgac
      601 agtcgaagca ctggaagccg cattcctctc cctgagcagg aaagcggccg ccggagtgga
      661 tggcatcagg tggatggact acgccggaaa catgaagaac aacataacag atctgcaccg
      721 gaggctacat cagggcagct acagggcgca gcccggcagg cgtcactaca tcccaaaagc
      781 ggatggaaaa caacgcccgc tcggcatcgc ctcgctggag gacaagatcg tccagtatgc
      841 gctggtgaaa atcctgaacg cagtctatga aaacgacttt atggggttct catacgggtt
      901 cagacccggg cgaagccagc acgatgcact ggacgcactg gccacagggc tggtacgcac
      961 taacgtaaac tgggtactgg atgccgacat cagtcagttc ttcgacaggg tgagccacga
     1021 atggctgatc aggttcacag agcatcggat cggcgaccgg agggtaatca ggctcatacg
     1081 taagtggctc acagccggga cgtcggagga gggtcaatgg cgagcaacgg aggaaggcac
     1141 cccacagggt gcggtcatct caccgctgct ggcaaacata tacctccact acgtcttcga
     1201 tctgtgggcg catcagtggc gacgtcgcta tgccacaggc aatgtggtaa tggtcagata
     1261 cgccgatgac atcgtcatcg ggttcgacaa acgatacgat gcccggcgct tccgtatagc
     1321 catgcagcgc agactgaggg agttcggact cacggttcac ccggagaaaa cccgtctgat
     1381 ggagttcggc cgcttcgctg ccgaaaaccg tgccatcagg ggaaaaggca aaccagaaac
     1441 gttcaacttc ctcgggttca cgcacatcag cgggaaagat cgcaacggca ggttcatgct
     1501 gatacgaaag acccgccggg atcggatgac ggcaactctg aaagccatca aagacggtct
     1561 gcgaaggcgc tggcattact caatccccga acagggaaaa tggctcagga gagtggttca
     1621 gggatacctg aactatcact cggtaccggg caacttcccc accatgcaga agttcaggac
     1681 acacgtaaca aacctctggc gccgggcgct caggcgcagg agccagaagg atgatacgac
     1741 ctggacgaaa gcaaacaaac tggcagccgc atggctacca agggttcggg ttcttcatcc
     1801 atggcctgtg gagcggttca ccgccagaca cccgaggcag gagcccggtg cgtaaatcgc
     1861 gcacgccggg atctgtgcgg ggggtatccg gtaacgggta tccctaccgc gaca
//
