LOCUS       NZ_CP138735             3478 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 0804017 plasmid unnamed9, complete
            sequence.
ACCESSION   NZ_CP138735
VERSION     NZ_CP138735.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040191
            Assembly: GCF_033862455.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:46:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,878
            CDSs (total)                      :: 5,752
            Genes (coding)                    :: 5,559
            CDSs (with protein)               :: 5,559
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 193
            CDSs (without protein)            :: 193
            Pseudo Genes (ambiguous residues) :: 0 of 193
            Pseudo Genes (frameshifted)       :: 70 of 193
            Pseudo Genes (incomplete)         :: 122 of 193
            Pseudo Genes (internal stop)      :: 34 of 193
            Pseudo Genes (multiple problems)  :: 27 of 193
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138735.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="0804017"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed9"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-08"
                     /collected_by="He Fang"
     gene            complement(join(3236..3478,1..180))
                     /locus_tag="R8556_RS29370"
                     /old_locus_tag="R8556_29375"
     CDS             complement(join(3236..3478,1..180))
                     /locus_tag="R8556_RS29370"
                     /old_locus_tag="R8556_29375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_061500298.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(180..371)
                     /locus_tag="R8556_RS29375"
                     /old_locus_tag="R8556_29380"
     CDS             complement(180..371)
                     /locus_tag="R8556_RS29375"
                     /old_locus_tag="R8556_29380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032421723.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(842..1033)
                     /locus_tag="R8556_RS29380"
                     /old_locus_tag="R8556_29385"
     CDS             complement(842..1033)
                     /locus_tag="R8556_RS29380"
                     /old_locus_tag="R8556_29385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2011..2436
                     /locus_tag="R8556_RS29385"
                     /old_locus_tag="R8556_29390"
     CDS             2011..2436
                     /locus_tag="R8556_RS29385"
                     /old_locus_tag="R8556_29390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_015328245.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     Typing          909..1532
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.424"
                     /coverage="99.0"
                     /evalue="7.140000000000001e-167"
ORIGIN
        1 gatgacacca tcaagagaac caaacactct aataagctct gatgtatcaa taactttaat
       61 acccttcccg tgctttacaa cagaggtgta acttaactta ccactgttaa tcatcttgta
      121 aatagtaggg cgactaacct taacaagccg tgctgcttca ctaatagaca ctctggccat
      181 cagttaccat cctgtaattc atccagtctc gaggacagtg tacggaaaag atgctccgca
      241 tcatcgtgga gtttctcaca aaggtcggcc tcagcatcga gatcaagctc gttaagcttc
      301 tccagcagga gcagagactg attctggatg aatttagcca tgttcagcgc tgttttctgt
      361 tgtttcgtca taagggacct cagagcatca gtgctcagtg taaaaccggt aagggggtcg
      421 gatgtacgaa tggttcagag aacggatctg aggtaatcct gtagttattt tgtagtttat
      481 ctgtagtcat cgcactaaaa atcaggatta agtcatcagc ttttgtagtc tttctgtagt
      541 ttacctgtag tccggaaaaa taatccgttc atgcgagcat gaacgaggtc gttaatgacg
      601 tttttttgtc accgacgccc cttaacctgc gtaaatcacc cgccatggtt gattattttt
      661 caacctcaaa atggtcatac acctaacgca gctgcgattt tcatcgcaac ttcatgaaaa
      721 ataaataaaa aagaaaaaat acagggattg tgggtattac cagggtaata atgttaagcg
      781 ctaagacaat gaaaattaag gcgatgccgg tattactccg gtaataccca gaacggagac
      841 attacgcacc gtcctgctgc tcattcaggc gcgctgacag gcttcggtaa aggcgttccg
      901 catcctcatg gagtttctcg cagaaatcag cctcatgatc cagatccagc tcattaagcc
      961 tgtccagaag aagcagggac tgatcctgga tgaatttagc catgttaacg gcagtctttt
     1021 gttgtttgtt catgaaggcc ccggcgcgaa agtgcttact gtacgttctg atggttttcc
     1081 gcttcctcgc tcattcgctc actccgttcg gtcatgagtc tgcggcgagc ggagagaaga
     1141 taagcagata acataacggt aagcataacg aaagctaagg acaagggcga aaaggccacg
     1201 ccccggcggg gcgtttttcc ataggctccg cccccctgac aagcatcacg aaatctgacg
     1261 ctcaaatcag tggcggcgaa acccgacagg actataaaga tcccaggcgt ttccccctgg
     1321 tagctccctc gtgcgctctc ctgttcctgc ctttcggttt accggtgtca ttccgctgtt
     1381 atggccgcgt ttatctcatt ccacgcctga cactcagttc cgggaaggca gttcgctcca
     1441 agctggactg tatgcacgaa ccccccgttc agtccgaccg ctgcgccttg tccggtaact
     1501 atcatcttga gtccaacccg gaaagacacg acaaagcgcc actggcagca gccactggta
     1561 actgatttag aggagttagt cttgaagtta tgcgccggtt aaggctaaac tgaaaggaca
     1621 agttttggtg actgcgctcc tccaagccag ttacctcggt tcaaagagtt gctagctctg
     1681 agaaccttcg aaaaaccgcc ctgcaaggcg gttttttcgt tttcagagca agagattacg
     1741 acgcaacgga caggatctca agaagttcat ctgtgatatt cgacagatat gggataaagg
     1801 attgcaacgc caggagtata tgagacatag cagccgccac caccaccaca gaatcaagcc
     1861 agttgcggca cgaaaggaaa gaaccgaact gtgcgacggt cgctacgctc tccgtaaatt
     1921 ttgtatacct accacggaga cataaagttt ctattgctga ttcgccttaa aaagggaaaa
     1981 atcctatttt ttctaaatgg atataacctt atgggaagct acgtagacca atcattgacg
     2041 agaaatgaat ccgtaatatc tcgcgctcaa acctcctgga ttccaacaat catcccagta
     2101 attatcggaa tcttgttgct gcctttttac ggcttagggt tacttataat aatcccagtg
     2161 ctccttagag tttggtcaac ggagcttgca ttaactaacc aaagagtcat cgcaaaagtg
     2221 ggtttgatcc gacgcaatac ggtggaactc cgtattgata aagttgaaag ccttggcata
     2281 catcaaggga tactgggacg aatctttaac tatggctcta tcgtgattaa aggcactggc
     2341 ggaaccaaca cgccaattcc aaacatcaag gcgccaatgc aattcagatc gattgtgaac
     2401 aatcatatcg aggaaatgaa ttctaagcag cagtagcttc ctcgtagcat tacaaaaaaa
     2461 gccctacggg gctttttttg tacctgccaa tcagctggat ttaccataac atccgttatc
     2521 agcaccgcct gagaggcttt cagggcgttt ctgacgggaa accggtaaaa caggcaacaa
     2581 accacccgaa aacccgccag aaacgcgcag actctgtttt tacggcatgc atgagtatgc
     2641 acgcaagtgc atagcgcgaa aattcacgcc attcagccgg ggtaagtcct gtttccgatg
     2701 ttcttcttac ccgaaaacgg tgaacaggga cgcaatttat tgcgtggccg tgaagcgttg
     2761 ccggcgcagc cggaaaaccc gctgtcagca cgttcaggaa tcgggttcgt cgacggccgg
     2821 caatcacgtt atggcaagtc gccggacgac tcaccacacg attcaccggc gattcgactc
     2881 gtgacttgac tctagagtca ccacggtcat aaaaacgcca aagcgacgat tcgactctag
     2941 agtcaagtcg tcataagtta ctgatagtgt ggagtgagtc gtcgatgact ctatgacgag
     3001 tcgtcggcaa gtcgtacacg aatcaccgac gacttggatt gaccttacag aaggtaatac
     3061 tgcgtaattt aataaaacct aaccaactga taataaggag ttatctgcaa aattttaatt
     3121 ttgcgtggtg tgtgggtatt tttcgtggtg aggagtgttc ccggatctgg cgatttttgg
     3181 gaaggttcag gaacgccccg ggatggccgg agaggaaaac tcaagcatgg cgggatcagg
     3241 attttttcca gaatttccac cacggggaat ggggtggtga agaaggttcg tgcttgtgct
     3301 ccagaagctg catagcctga cgaagggaat caatatgctc atctcgagcc ttaacagccc
     3361 ctttaagacc atcgttttca gcttcaagta aagcgattct atgttgtaaa tcatgtaaac
     3421 caacgctgtt aatacctgta gattctgcgt cactttttac atcatatttt acagtatc
//
