LOCUS       NZ_CP138696             4842 bp    DNA     circular CON 23-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 6072 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP138696
VERSION     NZ_CP138696.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38040182
            Assembly: GCF_033849915.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4842)
  AUTHORS   Hao,G.
  TITLE     Identification and global prevalence analysis of Klebsiella spp.
            containing the tmexCD-toprJ gene isolated in Chinese clinics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4842)
  AUTHORS   Hao,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2023) Department of Clinical Laboratory, Zhejiang
            Provincial People's Hospital, 158 Shangtang Road, hangzhou, zhejiang
            310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150x
            Sequencing Technology             :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 14:00:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,977
            CDSs (total)                      :: 5,855
            Genes (coding)                    :: 5,649
            CDSs (with protein)               :: 5,649
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 206
            CDSs (without protein)            :: 206
            Pseudo Genes (ambiguous residues) :: 0 of 206
            Pseudo Genes (frameshifted)       :: 92 of 206
            Pseudo Genes (incomplete)         :: 126 of 206
            Pseudo Genes (internal stop)      :: 41 of 206
            Pseudo Genes (multiple problems)  :: 43 of 206
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138696.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4842
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="6072"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Zhejiang"
                     /lat_lon="28.9063884 N 120.1962952 E"
                     /collection_date="2021-03"
                     /collected_by="He Fang"
     gene            join(3537..4842,1..185)
                     /locus_tag="R8546_RS29850"
                     /old_locus_tag="R8546_29850"
     CDS             join(3537..4842,1..185)
                     /locus_tag="R8546_RS29850"
                     /old_locus_tag="R8546_29850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000678150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_301717673.1"
                     /translation="MKGNVAKPGRSFKNRVDYILKDDHDFICSNMASDYNNVSDLTDEF
                     KTVSSFRQDIKKPVFHAFLSLPKNEHLTDEQWQEIAKDYLKEMNIDIDKHQYICVRHND
                     TDKEHIHIVANRVGLDGSVWLGQHSAFNTIAACERLEVKHGLTITDGLKGQKSEVSAPT
                     KNEIEQALRTGEKPARIVLQNALQAAMVGKPDLETFIDRLQAVGIEAAFNVASTGNVAG
                     VSFGIKNNEKNIYFKGSQLGKKYSWNTIKNKVIYDKNRDDELVRRFAARKTDDENSIRR
                     SPTEPDFNDSRAVDRIDDDTIGVSQHGIKPDTTDTNQSEQLIRSNNNRFKLSEKYNRPA
                     SHKVRRTTQKAAQILNRVKKQYNKEPIKTYNKNGLNSWRDKSDSGSIGRILDHAETANA
                     ATHSFRLKGRGSFNSRATKIEEIRDKLGIKKPVIQPKNKEKVIEKEIKKKPLGLSMNEN
                     RFKSKLKEALKKEKPKNETTPLQQEDDQHLKPRGFKPR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(194..469)
                     /locus_tag="R8546_RS29855"
                     /old_locus_tag="R8546_29855"
     CDS             complement(194..469)
                     /locus_tag="R8546_RS29855"
                     /old_locus_tag="R8546_29855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="WP_224373719.1"
                     /translation="MTALHTVKRNKTAKEMAQRLNISDRTVRKLIALPREDYEKEAKQR
                     RLKAFVLRESGMKWADVGIALGTTKHGAIALYKRYQQIDAPTTKEA"
                     /name="HTH domain-containing protein"
     gene            complement(473..1339)
                     /locus_tag="R8546_RS29860"
                     /old_locus_tag="R8546_29860"
     CDS             complement(473..1339)
                     /locus_tag="R8546_RS29860"
                     /old_locus_tag="R8546_29860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000481810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_057483990.1"
                     /translation="MFKIENNKDILKSQMPLKPYATNDLEFGLTIQNKNKALDMLYLQV
                     NHPLYLHTMIFDLDKENCFYEFENAHLPIPSFITKSPDSGRCHYGYMLNAPITSTEKSR
                     QKPVKFARALYYNMATRLGADLGYAGLITKNPLNPHWSPYWSDADLYELNDLADCFDDL
                     EDPKKRENTELAFGRNVEIFDTQRQWAYKNVLKYKNESSFDAFYKELLLKCETFNSFAN
                     YNNLLPYKELVSTAKSIAKFCWKEFSNEKLHDIQSKKQKARRSKRTEKQKLHTKTLLEK
                     AIMINEE"
                     /name="replication initiation protein"
     gene            1640..1855
                     /locus_tag="R8546_RS29865"
                     /old_locus_tag="R8546_29865"
     CDS             1640..1855
                     /locus_tag="R8546_RS29865"
                     /old_locus_tag="R8546_29865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001171587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_224373721.1"
                     /translation="MQKTKRRLGFMVGKSNATLPPDDETEAELDQEVLKLFYPNQETQD
                     TIERSEAGTDVFMASGSDDLFKKLKL"
                     /name="hypothetical protein"
     gene            2472..2723
                     /locus_tag="R8546_RS29870"
                     /old_locus_tag="R8546_29870"
     CDS             2472..2723
                     /locus_tag="R8546_RS29870"
                     /old_locus_tag="R8546_29870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016241876.1"
                     /translation="MKIVLSVSKCLYINDLDRLLPCDRFFVHLDYKDISKNESFEMNRH
                     DKESYKLIIDKIVGNEVMLAIDEDIYSEVVENLTLLLK"
                     /name="hypothetical protein"
     gene            2743..2916
                     /locus_tag="R8546_RS29875"
                     /old_locus_tag="R8546_29875"
     CDS             2743..2916
                     /locus_tag="R8546_RS29875"
                     /old_locus_tag="R8546_29875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016241875.1"
                     /translation="MIIAIGMMLLCIMLGGFMIRSCMGKTNSSSEAKQSISDVRKIIDK
                     KELIKYKRRNQR"
                     /name="hypothetical protein"
     gene            2913..3182
                     /locus_tag="R8546_RS29880"
                     /old_locus_tag="R8546_29880"
     CDS             2913..3182
                     /locus_tag="R8546_RS29880"
                     /old_locus_tag="R8546_29880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016241874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_150316402.1"
                     /translation="MIMEYEMKLNVLARFFYYIEQAKDIPFDYSSYDEQGLCYFVANRY
                     INENKADDLIQALIDTNDDDYIKAIRDYVQYTALNEVRKKYEDR"
                     /name="hypothetical protein"
     gene            3169..3540
                     /gene="mobC"
                     /locus_tag="R8546_RS29885"
                     /old_locus_tag="R8546_29885"
     CDS             3169..3540
                     /gene="mobC"
                     /locus_tag="R8546_RS29885"
                     /old_locus_tag="R8546_29885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_064374444.1"
                     /translation="MKTDRKRGRIELNHEVRRDISIQFRVNKAEFEYLKELVEASGLER
                     GHYIRREILNSEPIVKRKMPDFEQSLYKEIQHQGNNINQIAKKLNTNEDFKQSVAAEAN
                     FAIKQLMKRILKACEVYTI"
                     /name="mobC"
ORIGIN
        1 agaataaaga aaaagtgatt gaaaaagaaa taaagaaaaa acctttagga ttaagcatga
       61 atgaaaatag atttaaatcg aagttaaaag aagctcttaa aaaagaaaaa ccaaaaaatg
      121 aaacaacacc actacagcag gaagacgatc agcatttaaa accaagaggt tttaaaccgc
      181 gataaaagag gctttaagcc tcttttgttg ttggtgcgtc tatttgttga taacgtttat
      241 aaagagctat agcaccgtgt tttgtagttc caagagcaat accaacatct gcccatttca
      301 tcccgctttc acgtaataca aaggctttta atcgtctttg ttttgcttct ttctcatagt
      361 cttcacgagg taaagcaatc aacttcctga cggttctatc actgatattt aatctttgag
      421 ccatttcttt ggctgtttta ttccttttta ccgtatgtaa tgccgtcata ttttactcct
      481 cgttaatcat tattgctttt tctaaaagtg ttttagtgtg tagcttttgt ttttctgttc
      541 ttttagatct tcttgctttc tgttttttac tctgaatatc atgaagtttt tcgttactaa
      601 attctttcca gcaaaacttg gctatacttt ttgctgttga tacaagttct ttgtaaggta
      661 atagattatt atagttagca aagctattaa atgtttcgca tttcaataat aactctttat
      721 aaaatgcatc aaatgagctt tcattcttat attttagcac gtttttataa gcccattgcc
      781 tttgtgtatc aaatatttca acattgcgac caaaagctaa ctctgtattt tctcttttct
      841 ttgggtcttc caaatcatca aaacaatcag ctaaatcatt tagctcatat aaatcagcat
      901 ctgaccaata aggcgaccaa tgaggattta gcgggttttt tgtaatcagt cccgcataac
      961 ccagatcagc accaagacga gtagccatat tgtaatataa tgctctggca aactttacgg
     1021 gcttctgtct gcttttctct gttgatgtta taggagcatt aagcatataa ccgtagtggc
     1081 aacgtccact atcagggctt ttagttataa aagacggtat aggtaaatgg gcattttcaa
     1141 actcgtaaaa gcagttttct ttgtctaaat caaatatcat tgtatgaaga taaagcgggt
     1201 gatttacttg tagataaagc atatctaaag ctttattctt attttgaata gtcaatccaa
     1261 actctaaatc atttgtagca tatggcttta aaggcatttg actttttaat atatctttgt
     1321 tattttctat cttgaacata tagcagtatc ctttctgtaa tgccccgttc tctcactggt
     1381 cgccaaacta atcagagaac gcgggctttt cttttattta taatctctta cagttttact
     1441 atatcaaaat atcttgtcaa tagatccgtc aaaaaaagtt gttaagtagg aagtctacca
     1501 atatcaggta ttagacggag ttttggggat cctacaccac agcgaagcac aggccgaagg
     1561 ccatctacag agtaagtcac actgtaacgt atactaaact ctatgtaaga tctggctgtg
     1621 ctggatagga gagcatgata tgcagaaaac aaagcgtaga ctcggcttta tggttggtaa
     1681 gagcaatgca acattgccac cagatgacga aacagaagca gagcttgatc aggaagtcct
     1741 gaagctgttt tatcctaacc aagagacaca agacactata gaacgctcag aagccggtac
     1801 agacgttttc atggcctccg gttctgatga cctgttcaaa aaactgaagc tgtagggcag
     1861 gggagagccg gccatcttca ccagtagaac aaaccgaccc ggaacggtga gagaaggcca
     1921 accctcgatg cagtatatac tatactaata tatactatag tctgttgatt ttatgagcat
     1981 ttcaaacaca tagacgccag caacagcaga aaagcgagtt ttctactgtt ctgtcgccgc
     2041 cgatcaaacc ccattcctta aaatctgcct accaagtggt cacgaacttt tccagatttc
     2101 acgtagcagc ggcatttttt acgcaaagct acctattacg cacagctacc catcaagaca
     2161 atatattatt taccctattt tttatttgca ttttatttgt tgtgcagggt atttatttat
     2221 gtagccgcta tattgacaaa ctttttagat cggttattta tttaaatata ggttgagttc
     2281 agctttattt ttatcttttc ggaaactgag gcaaggtgta atagcgtatc cgctatttta
     2341 cccaatccta tcggattgcc ttgtctcgtt tcactcgcaa ggttgaaaaa gatctaccct
     2401 tccgcttatt tcccctatca aggggaagcg gtaaaccata gttagatatt ataaatatag
     2461 gagaaataaa tatgaaaata gttttatcag tatcaaaatg tttatacata aacgatttag
     2521 atcgcttact tccgtgtgat cgtttttttg ttcatttaga ttataaggat attagcaaaa
     2581 atgagtcatt tgagatgaat agacacgaca aagaaagcta caaacttatc attgataaga
     2641 ttgtaggtaa tgaagtaatg cttgctattg atgaagatat atatagcgaa gttgtcgaaa
     2701 acttaacttt attattaaaa tgaggcttat ggagattaat atatgattat agcaatagga
     2761 atgatgcttc tttgtattat gctcggtggt ttcatgatcc gtagttgtat gggaaaaaca
     2821 aactcttcaa gtgaagcaaa gcaatcaata tcagatgtta gaaaaataat agataaaaaa
     2881 gaactgatta aatacaaaag aaggaaccaa agatgattat ggaatatgaa atgaagctta
     2941 atgtgttagc acgttttttt tattatatcg agcaagctaa agatatacct tttgattact
     3001 caagctatga cgaacaagga ttatgttatt ttgtagctaa tagatacatt aacgaaaata
     3061 aagctgatga tcttatacag gcattgatag atactaatga cgatgattat ataaaagcta
     3121 taagagatta tgttcagtat acagctttaa atgaagtgag aaagaaatat gaagacagat
     3181 agaaaaagag gacgtataga gttaaatcac gaagtacgta gagatatatc tatacagttt
     3241 agagtaaaca aagcagagtt tgaatattta aaagaacttg ttgaggcgtc tggccttgaa
     3301 agaggtcatt acattagaag agagatttta aactctgaac ctattgttaa aagaaaaatg
     3361 ccggattttg agcaatcatt gtataaagaa atacaacatc aaggtaataa tataaatcag
     3421 attgctaaaa agctaaatac gaatgaagac tttaaacaat ctgtagccgc agaagctaac
     3481 tttgctataa agcaacttat gaaaagaata ttaaaggctt gtgaggttta taccatatga
     3541 aaggaaatgt agcaaaaccc ggaagatcat ttaaaaatag agttgattac attcttaaag
     3601 atgaccacga ttttatatgt agcaatatgg caagtgatta taataatgtt agtgatttaa
     3661 ctgatgagtt taaaactgta agcagcttta gacaagatat aaaaaaacca gtatttcacg
     3721 cttttttatc tcttccaaaa aatgaacatt taacagatga acaatggcaa gagatagcaa
     3781 aagactattt gaaagaaatg aatattgata tagacaaaca tcaatatatt tgtgttcgtc
     3841 ataacgatac agataaagaa catatccata ttgtagctaa tcgtgttggc cttgatggtt
     3901 ctgtatggct cggtcagcac tcagcattta acacaatagc agcttgtgaa cgtttagaag
     3961 taaaacacgg cttaaccatc acggatggct taaaaggtca aaaatcagag gtatcagcac
     4021 caaccaagaa cgagatcgag caagccttga ggacaggtga gaaaccagct cgtatcgtgc
     4081 tacagaacgc attacaggcg gctatggtag gaaaaccaga tcttgagaca ttcatagaca
     4141 gactgcaggc tgtaggcatc gaggcggcct ttaacgttgc aagcactggc aacgtcgccg
     4201 gggtgtcgtt tggtatcaaa aataatgaaa aaaatattta tttcaaggga tctcagttgg
     4261 gtaaaaaata cagttggaac actataaaaa acaaggtgat atatgacaaa aatagagatg
     4321 atgaacttgt tagaagattc gcagcaagaa aaacagatga cgaaaatagt attagacgat
     4381 cacctactga accagatttc aatgacagta gagccgttga cagaatcgat gatgatacta
     4441 tcggagtcag tcagcacggc attaaaccag acacaacaga cactaaccag agtgaacaac
     4501 tcattagaag caacaacaac cgctttaaac tcagcgaaaa atataataga ccagcaagcc
     4561 ataaagttag aagaacaaca caaaaagctg cacaaatact caacagagtt aaaaaacaat
     4621 acaataaaga accaatcaaa acttataata aaaatggcct caatagttgg cgtgataaat
     4681 ctgatagcgg ttctattggt aggatacttg atcatgcaga aacagccaac gcagccaccc
     4741 attcatttag actcaaaggc cgtggcagtt tcaatagtag agcaactaag atcgaagaga
     4801 taagagataa acttggaata aaaaaaccag ttattcagcc aa
//
