LOCUS       NZ_CP138574             2186 bp    DNA     circular CON 05-APR-2024
DEFINITION  Citrobacter braakii strain JX21CE32 plasmid pCE32-4, complete
            sequence.
ACCESSION   NZ_CP138574
VERSION     NZ_CP138574.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38166394
            Assembly: GCF_037477975.1
KEYWORDS    RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   He,D. and Feng,Y.
  TITLE     The whole genome sequence of a cfr-positive Citrobacter braakii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   He,D. and Feng,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2023) College of Animal Science and Veterinary
            Medicine, Henan Agricultural University, wenhua road No.95,
            Zhengzhou 450002, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. v.0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60.0x
            Sequencing Technology             :: Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477975.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:30:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,970
            CDSs (total)                      :: 4,851
            Genes (coding)                    :: 4,759
            CDSs (with protein)               :: 4,759
            Genes (RNA)                       :: 119
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 20 of 92
            Pseudo Genes (incomplete)         :: 68 of 92
            Pseudo Genes (internal stop)      :: 21 of 92
            Pseudo Genes (multiple problems)  :: 16 of 92
            Pseudo Genes (short protein)      :: 1 of 92
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP138574.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="JX21CE32"
                     /host="chicken"
                     /db_xref="taxon:57706"
                     /plasmid="pCE32-4"
                     /geo_loc_name="China: Jiangxi"
                     /collection_date="2021-04-01"
     gene            102..428
                     /locus_tag="SD415_RS24840"
                     /old_locus_tag="SD415_24835"
     CDS             102..428
                     /locus_tag="SD415_RS24840"
                     /old_locus_tag="SD415_24835"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="WP_077125487.1"
                     /translation="MNQDALKILAKTLTGEQFKVLMMLLADLDYENYIQIAQADIADAL
                     GMQKTNVSRSVKALIDLSVILQGPKVGRSYSYRLNPQFGWKGTVSNHKKALKNGLSVIQ
                     GGRT"
                     /name="MarR family transcriptional regulator"
     gene            complement(490..1458)
                     /gene="mobV"
                     /locus_tag="SD415_RS24845"
                     /old_locus_tag="SD415_24840"
     CDS             complement(490..1458)
                     /gene="mobV"
                     /locus_tag="SD415_RS24845"
                     /old_locus_tag="SD415_24840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_053292550.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENYCS
                     VSQSADEAMGKLRELLPEKRRKDAVLAVEYVMTASPEWWNEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     Typing          complement(494..1506)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.45"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 accgaattac tcagatagac actgctacag gggaagaggt aggtagtttt gtcgcagtta
       61 tccgacccaa acagaagtca gcttttgaga ggcatttcac tatgaaccaa gacgctttaa
      121 agatccttgc taagaccctc acaggggagc aattcaaagt cttgatgatg ctgttagctg
      181 atctcgatta tgaaaattac atccaaattg cccaagccga tattgccgac gctttaggta
      241 tgcagaaaac caatgtaagc cgttcggtta aggcgctaat tgacctatcc gtgattcttc
      301 aaggcccaaa agtagggcgc agttacagtt accgtctgaa ccctcagttt ggctggaaag
      361 gtactgtcag caaccacaag aaagcactaa aaaacggcct cagcgttata cagggcggca
      421 gaacctaatc tggaatgccg caaatgacgt cactttgcgg cgttagccct atcctgcatc
      481 gcatcaaaac taacgctcca taccacccat gccacgcgat cgcgtctgtc gctgtttttc
      541 acgttcaata cgctgctgtt tttccttttc ctggttttgc tgcttaaacc gctgagccat
      601 catcaggatt tcggtcatct gctctctgga aagcccctta aaaggctctg taacgctctg
      661 taggcgtttc tgctgcgcat ccatagtctt ctgtagctca cgcgctcttt ttgcgttctg
      721 ggcgctctga gaggccatag cgatggttcc tgcaaagcca tcgttcactg cgtggcttag
      781 acgtttggct atggctgcct gatcttccac gtctttggtg aaaatgccct tccgcaatac
      841 acgcggctcc agcgcctccg gcgagatcga tacctggcta cgggtgccac ggtttatcga
      901 ttcgtagtag tgctgaactg tctgatgcgt ggcgcggctt ccctcgatgc cgcgctcaag
      961 acccagtttt tttactgatt cagcgtaggt gctctgatct tcacgcatct ttgaccgccc
     1021 gccaataaac tctttcgcgg acagccgtcc atcctgcgtc aatggcacca cgaacgcaga
     1081 caggtgcggg gtggcctcgt cccggtgaac caccgccgcc acaacacgat ccttcccgta
     1141 tttcttctcc agccattgct cagagcgggc gaaaaactcc gcctgctgcc gcggtgtggc
     1201 ctcgttccac cactcagggc ttgccgtcat aacgtattca acagccagta ccgcatcttt
     1261 acggcgtttt tccggcaaca gctcccgcag ctttcccatc gcctcatctg ccgactgaga
     1321 cacagagcag tagttttctg gtgtccgttc agcgtcagca ttcggcgtct cacgctccct
     1381 gtagcagtgc tgcaacgcgc tggccacact gcccattccc gtcagctttt tgcagcgcat
     1441 tatcgcgtaa ttcgccatgc ttaccccctc gttccggcgt ccatccggcc agtcggggga
     1501 tcgcattgcg atgcctccgg cgggccacta tcaggatgat agtgtactca ctagactttg
     1561 cttcgcaaaa tcgttcgggc agcaagctgc cataaggtca aaatcaacgg cggtctggca
     1621 ggtggaaggc gtcgctccgc gtcacctccc accactgcca agcctgtttt atttgtgcgt
     1681 cgtcaagggt gaaatgcact cgctccgctc gcccttgacg aaatcaggat ctggatatcg
     1741 cttttgaaag agcaggaacc gctcgccgca gatcggatta gggagcggca acgccgcgag
     1801 tctgtccgat cgaggaagcg gaatttccac tccccggaca tagaaatccg tacgctccag
     1861 actcaaaaaa gctcgttttt cgatgtttaa aaatggcgtt tttcagcctt tatttccccc
     1921 cttaatatat agatatagat acgggaaccc gcgcacacca agggctagag agaagaatcg
     1981 tactcacctc aagtactaat cgtactcacc tcaagtacta atcgtacttt aggtatggca
     2041 ctcgctacgc tcgctataag atacagaaga gagccttctc tcagcccttg tggggcgcgg
     2101 ctctcgcttg acgatagtta tcattattga taacgttgtt atcattattg ataactattt
     2161 ttttgggaga gcctcttaaa tgagta
//
